mRNA_H-paniculata_contig948.17224.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig948.17224.1
Unique NamemRNA_H-paniculata_contig948.17224.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig948.17224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig948contigH-paniculata_contig948:19772..20339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size570
Cds size339
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931178.9615345-UTR-H-paniculata_contig948:19771..200001622931178.9615345-UTR-H-paniculata_contig948:19771..20000Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig948 19772..20000 +
1691481626.0586498-UTR-H-paniculata_contig948:19771..200001691481626.0586498-UTR-H-paniculata_contig948:19771..20000Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig948 19772..20000 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931178.9788353-CDS-H-paniculata_contig948:20000..203391622931178.9788353-CDS-H-paniculata_contig948:20000..20339Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig948 20001..20339 +
1691481626.074729-CDS-H-paniculata_contig948:20000..203391691481626.074729-CDS-H-paniculata_contig948:20000..20339Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig948 20001..20339 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig948.17224.1prot_H-paniculata_contig948.17224.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig948 20001..20339 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig948.17224.1

>prot_H-paniculata_contig948.17224.1 ID=prot_H-paniculata_contig948.17224.1|Name=mRNA_H-paniculata_contig948.17224.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
MNMSNCPLQKASPKSTPEAGSSSRGQSLGPIRDSDAMSTLSVNGEKMSRR
EVKKALAVRKNAKVEEFSNSRYEQMRELLTWVKTGAQRADDVARSISTVD
RTAVVDRQMRSLP
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mRNA from alignment at H-paniculata_contig948:19772..20339+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig948.17224.1 ID=mRNA_H-paniculata_contig948.17224.1|Name=mRNA_H-paniculata_contig948.17224.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=568bp|location=Sequence derived from alignment at H-paniculata_contig948:19772..20339+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTACTGAGGGGAGGAAGGCAGATGCCATCTTGAACGAAGCCGTGCAGAC
GAAGGCGAAGGCAAGGCAAGAAGGCGGCGGTGACGAGGCAGGAGAAGGAT
GTCCTGAACAGGGGGGAACGGCCACAACAGATATCCCCCCCATGCCCCCG
GTACTGGGTTTCTCCCCATTTGCTGACGTTCCCCCTGTGGGGGCCGCTAG
CTGGGTCCCAGAGCACCGACGAGTTGTGCATGAACATGTCGAATTGTCCA
TTGCAGAAAGCCTCACCCAAGTCCACACCTGAGGCAGGCAGTTCATCACG
TGGCCAGTCATTAGGCCCGATACGTGACTCCGACGCTATGTCGACGCTCT
CGGTAAACGGGGAGAAGATGAGCCGAAGGGAAGTAAAGAAGGCCCTTGCC
GTGCGGAAGAACGCGAAGGTGGAGGAGTTCAGCAACTCCCGATATGAGCA
AATGAGGGAGTTACTAACCTGGGTGAAGACCGGAGCGCAGCGTGCCGATG
ACGTGGCCCGCAGTATTAGCACGGTAGATCGGACGGCGGTAGTGGACCGA
CAGATGAGAAGTTTGCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig948:19772..20339+

>mRNA_H-paniculata_contig948.17224.1 ID=mRNA_H-paniculata_contig948.17224.1|Name=mRNA_H-paniculata_contig948.17224.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig948:19772..20339+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACATGTCGAATTGTCCATTGCAGAAAGCCTCACCCAAGTCCACACC
TGAGGCAGGCAGTTCATCACGTGGCCAGTCATTAGGCCCGATACGTGACT
CCGACGCTATGTCGACGCTCTCGGTAAACGGGGAGAAGATGAGCCGAAGG
GAAGTAAAGAAGGCCCTTGCCGTGCGGAAGAACGCGAAGGTGGAGGAGTT
CAGCAACTCCCGATATGAGCAAATGAGGGAGTTACTAACCTGGGTGAAGA
CCGGAGCGCAGCGTGCCGATGACGTGGCCCGCAGTATTAGCACGGTAGAT
CGGACGGCGGTAGTGGACCGACAGATGAGAAGTTTGCCCATGAACATGTC
GAATTGTCCATTGCAGAAAGCCTCACCCAAGTCCACACCTGAGGCAGGCA
GTTCATCACGTGGCCAGTCATTAGGCCCGATACGTGACTCCGACGCTATG
TCGACGCTCTCGGTAAACGGGGAGAAGATGAGCCGAAGGGAAGTAAAGAA
GGCCCTTGCCGTGCGGAAGAACGCGAAGGTGGAGGAGTTCAGCAACTCCC
GATATGAGCAAATGAGGGAGTTACTAACCTGGGTGAAGACCGGAGCGCAG
CGTGCCGATGACGTGGCCCGCAGTATTAGCACGGTAGATCGGACGGCGGT
AGTGGACCGACAGATGAGAAGTTTGCCC
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