prot_H-paniculata_contig9461.17210.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig9461.17210.1
Unique Nameprot_H-paniculata_contig9461.17210.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length162
Homology
[Close]
BLAST of mRNA_H-paniculata_contig9461.17210.1 vs. uniprot
Match: A0A1J3GZK5_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3GZK5_NOCCA)

HSP 1 Score: 110 bits (275), Expect = 7.650e-27
Identity = 66/167 (39.52%), Postives = 96/167 (57.49%), Query Frame = 0 
Query:    1 LLHERLGHVRDLHTVAQQQN--------IKLREKLGVCSACERGKAAKQPVKKYREEQTTERLELVHTDIAGPVGE-SFEGRRFAVIVVDDYSRMRKVYALRRKSEALWALRQFGWDIAMANGLQIKNRQPDQGGEFTGEAFRQRCAKNGRKQEFSAAYTPQQNGVA 158
            L H RLGH+ +      Q+N        +K+ EK  VC+ C  GK  ++   K  + + TE+LEL+HTD+ GP+   S  G+R+ +++VDD+SR   +Y L  KSEA    + F   +       I+  + D+GGEFT E F Q C  +G K++ +AAYTPQQNGVA
Sbjct:   84 LWHRRLGHLNNTSIQIMQKNELVKGLPDMKIEEK--VCTVCNIGKQQREKFPKKSKWRATEKLELIHTDLCGPITPISQSGKRYLMVLVDDFSRKTWIYFLTEKSEAFETFKVFKNLVEKEVKTMIRGLRTDRGGEFTSENFNQFCRDHGIKRQLTAAYTPQQNGVA 248
[Close]
BLAST of mRNA_H-paniculata_contig9461.17210.1 vs. uniprot
Match: A0A5N6Q192_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6Q192_9ASTR)

HSP 1 Score: 112 bits (279), Expect = 1.150e-25
Identity = 65/166 (39.16%), Postives = 98/166 (59.04%), Query Frame = 0 
Query:    3 HERLGHV--RDLHTVAQQQNI-----KLREKLGVCSACERGKAAKQPVKKYREEQTTERLELVHTDIAGPVG-ESFEGRRFAVIVVDDYSRMRKVYALRRKSEALWALRQFGWDIAMANGLQIKNRQPDQGGEFTGEAFRQRCAKNGRKQEFSAAYTPQQNGVAKR 160
            H RLGH+  + L T+ Q +N+     K+ E+  +C  C  GK  ++ V      + T +L+L+HTD+ GP+  ES  G+R+ ++++DDYSR   VY L +KSE     ++F   +    GL IK  + D+GGEFT   F + C   G K++ + AYTPQQNGVA+R
Sbjct:  435 HRRLGHINHKSLRTM-QYKNLVHGLPKIVEQTKLCEVCHLGKQQRESVPNKSHWRATTKLQLIHTDLCGPIAPESPSGKRYIMVLIDDYSRKGWVYFLSKKSETFETFKKFKTRVENKTGLTIKGLRSDRGGEFTSTEFAEFCDSFGIKRQLTTAYTPQQNGVAER 599
[Close]
BLAST of mRNA_H-paniculata_contig9461.17210.1 vs. uniprot
Match: A0A5N6M7D6_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M7D6_9ASTR)

HSP 1 Score: 108 bits (271), Expect = 1.520e-24
Identity = 60/165 (36.36%), Postives = 104/165 (63.03%), Query Frame = 0 
Query:    3 HERLGHV--RDLHTVAQQQNIK----LREKLGVCSACERGKAAKQPVKKYREEQTTERLELVHTDIAGPVGESFE-GRRFAVIVVDDYSRMRKVYALRRKSEALWALRQFGWDIAMANGLQIKNRQPDQGGEFTGEAFRQRCAKNGRKQEFSAAYTPQQNGVAKR 160
            H RL HV  + + T+ Q++ ++    +  K  +C  C  GK  ++ + K    ++TE+LEL+HTD+ GP+  + + G+R+ ++ +DD +R   VY L+ K E+  A ++F   +   +G +IK  + D+GGEF  ++F + CA++G K++ +AAYTPQQNGVA+R
Sbjct:  445 HRRLAHVNYKAIKTMQQKEMVRGLPEVSGKAMICETCNVGKQNRENIPKKSWWRSTEKLELIHTDLCGPITPASQSGKRYVLVFIDDLTRKTWVYLLQFKHESFDAFKRFKVAVENESGCKIKALRSDRGGEFNSQSFNEFCAQSGIKRQLTAAYTPQQNGVAER 609
[Close]
BLAST of mRNA_H-paniculata_contig9461.17210.1 vs. uniprot
Match: A0A4Y1REW6_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1REW6_PRUDU)

HSP 1 Score: 108 bits (269), Expect = 2.870e-24
Identity = 59/165 (35.76%), Postives = 93/165 (56.36%), Query Frame = 0 
Query:    3 HERLGHVRDLHTVAQQQNIKL------REKLGVCSACERGKAAKQPVKKYREEQTTERLELVHTDIAGPV-GESFEGRRFAVIVVDDYSRMRKVYALRRKSEALWALRQFGWDIAMANGLQIKNRQPDQGGEFTGEAFRQRCAKNGRKQEFSAAYTPQQNGVAKR 160
            H RLGH+        QQ   +       EK GVC  C  GK+ ++P +  +  +    LEL+HTD+ GP+  ES  G ++ +  +DDYSRM  VY LR KS  +   ++F   + + +G  +K  + D+GGE+T   F + C+  G +++ + AY+PQQNG+A+R
Sbjct:  375 HRRLGHLNFASMKKMQQTQMVLGLPDFSEKEGVCEGCVYGKSHREPFENEKPWRAKNPLELIHTDVCGPMQNESIGGNKYFITFIDDYSRMCWVYFLRNKSSVISVFKKFKVFVELQSGFNLKKLRSDRGGEYTSHEFLEYCSDLGMERQLTIAYSPQQNGIAER 539
[Close]
BLAST of mRNA_H-paniculata_contig9461.17210.1 vs. uniprot
Match: A0A4Y1R3A1_PRUDU (BURP domain-containing protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R3A1_PRUDU)

HSP 1 Score: 108 bits (269), Expect = 2.880e-24
Identity = 59/165 (35.76%), Postives = 93/165 (56.36%), Query Frame = 0 
Query:    3 HERLGHVRDLHTVAQQQNIKL------REKLGVCSACERGKAAKQPVKKYREEQTTERLELVHTDIAGPV-GESFEGRRFAVIVVDDYSRMRKVYALRRKSEALWALRQFGWDIAMANGLQIKNRQPDQGGEFTGEAFRQRCAKNGRKQEFSAAYTPQQNGVAKR 160
            H RLGH+        QQ   +       EK GVC  C  GK+ ++P +  +  +    LEL+HTD+ GP+  ES  G ++ +  +DDYSRM  VY LR KS  +   ++F   + + +G  +K  + D+GGE+T   F + C+  G +++ + AY+PQQNG+A+R
Sbjct:   67 HRRLGHLNFASMKKMQQTQMVLGLPDFSEKEGVCEGCVYGKSHREPFENEKPWRAKNPLELIHTDVCGPMQNESIGGNKYFITFIDDYSRMCWVYFLRNKSSVISVFKKFKVFVELQSGFNLKKLRSDRGGEYTSHEFLEYCSDLGMERQLTIAYSPQQNGIAER 231
[Close]
BLAST of mRNA_H-paniculata_contig9461.17210.1 vs. uniprot
Match: K8YS61_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YS61_NANGC)

HSP 1 Score: 102 bits (255), Expect = 4.280e-24
Identity = 64/171 (37.43%), Postives = 96/171 (56.14%), Query Frame = 0 
Query:    1 LLHERLGHV-----RDLHTVAQQQNIKLREKLGVCSACERGKAAKQPVKKYREEQTTERLELVHTDIAGPVG-ESFEGRRFAVIVVDDYSRMRKVYALRRKSEALWALRQFGWDIAMA----NGLQIKNRQPDQGGEFTGEAFRQRCAKNGRKQEFSAAYTPQQNGVAKRS 161
            L H+R GH+     R +  +      K  +K GVC+ CER K  K+       E+  E LELVHTD+ GPV  ES  G R+A+   DDY+R R VY ++ KS++L  L+++  D+ ++        ++  + D GGE+TG  F+  C  +G +Q+F   Y PQ NGVA++S
Sbjct:    3 LWHQRFGHINYEYLRQMGEIDDTGVPKGIKKPGVCATCERAKHTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSDSLDCLKRYIQDMNISFRDHKVNTLRGLRSDNGGEYTGVDFKNFCKNHGIRQDFGIPYGPQDNGVAEKS 173
[Close]
BLAST of mRNA_H-paniculata_contig9461.17210.1 vs. uniprot
Match: A0A1J3ENS7_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3ENS7_NOCCA)

HSP 1 Score: 107 bits (267), Expect = 5.340e-24
Identity = 59/167 (35.33%), Postives = 99/167 (59.28%), Query Frame = 0 
Query:    1 LLHERLGHVRD--LHTVAQQQNIK----LREKLGVCSACERGKAAKQPVKKYREEQTTERLELVHTDIAGPVGE-SFEGRRFAVIVVDDYSRMRKVYALRRKSEALWALRQFGWDIAMANGLQIKNRQPDQGGEFTGEAFRQRCAKNGRKQEFSAAYTPQQNGVAKR 160
            L H+R GH+ +  +  +  +Q +K    ++E   VC  C  GK  ++ + K  + + TE+L+L+H D+ GP+   S  G+R+  +++DD+SR   +Y L  K+EA    + F   +    G  + + + D+GGEFT  AF Q C ++G +++ +AAYTPQQNGVA+R
Sbjct:   36 LWHKRYGHLNNTSIRAMLDKQLVKGLSQMKEASKVCEVCNIGKQHREAIPKKSQWRATEKLKLIHADLCGPISPISHSGKRYIFLLIDDFSRKSWIYLLSEKNEAFDVFKTFKSLVEKEAGTSLCSLRTDRGGEFTSNAFNQFCKEHGIQRQLTAAYTPQQNGVAER 202
[Close]
BLAST of mRNA_H-paniculata_contig9461.17210.1 vs. uniprot
Match: A0A151SRN1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SRN1_CAJCA)

HSP 1 Score: 102 bits (253), Expect = 6.750e-24
Identity = 54/133 (40.60%), Postives = 83/133 (62.41%), Query Frame = 0 
Query:   29 VCSACERGKAAKQPVKKYREEQTTERLELVHTDIAGPVGESFEG-RRFAVIVVDDYSRMRKVYALRRKSEALWALRQFGWDIAMANGLQIKNRQPDQGGEFTGEAFRQRCAKNGRKQEFSAAYTPQQNGVAKR 160
            +CS C  GK  ++P+ K  + + +++L+L+H DI GP+  +    +R+ +  +DDYSR   VY L  KSEAL+  + F   +   +GL +K  + D+GGEFT   F + C  NG K++ + AYTPQQNGVA+R
Sbjct:   28 MCSDCVNGKQHREPMPKKSKWRASQKLQLIHADICGPITPASNNQKRYFLCFIDDYSRKSWVYFLLEKSEALYHFKCFKTLVEKESGLPVKVFRTDRGGEFTSSEFNEFCELNGIKRKLTTAYTPQQNGVAER 160
[Close]
BLAST of mRNA_H-paniculata_contig9461.17210.1 vs. uniprot
Match: A0A1J3CMV3_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3CMV3_NOCCA)

HSP 1 Score: 104 bits (260), Expect = 8.370e-24
Identity = 60/167 (35.93%), Postives = 97/167 (58.08%), Query Frame = 0 
Query:    1 LLHERLGHV--RDLHTVAQQQNI----KLREKLGVCSACERGKAAKQPVKKYREEQTTERLELVHTDIAGPVGESFEGR-RFAVIVVDDYSRMRKVYALRRKSEALWALRQFGWDIAMANGLQIKNRQPDQGGEFTGEAFRQRCAKNGRKQEFSAAYTPQQNGVAKR 160
            L H R GH+  + L+T+  ++ +    ++ +   VC AC RGK  + P  K  + + TERLEL+H+D+ GP+  S   + R+ +  +DD+SR   +Y +  KSEA    + F   +    GL IK  + D+GGE+    F+  C ++G K++ + A+TPQQNGVA+R
Sbjct:   59 LWHHRYGHLSYKGLNTLCSKEMVVGLPEIEDVKTVCDACVRGKHHRVPFPKQSKWRATERLELIHSDLCGPISPSSNSQIRYLISFIDDFSRKTWIYFVGEKSEAFDRFKTFKAFVEKQTGLLIKGLRTDRGGEYNSNEFKGFCREHGIKRQLTTAFTPQQNGVAER 225
[Close]
BLAST of mRNA_H-paniculata_contig9461.17210.1 vs. uniprot
Match: A0A151RFW5_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RFW5_CAJCA)

HSP 1 Score: 102 bits (253), Expect = 9.900e-24
Identity = 58/132 (43.94%), Postives = 77/132 (58.33%), Query Frame = 0 
Query:   30 CSACERGKAAKQPVKKYREEQTTERLELVHTDIAGPV-GESFEGRRFAVIVVDDYSRMRKVYALRRKSEALWALRQFGWDIAMANGLQIKNRQPDQGGEFTGEAFRQRCAKNGRKQEFSAAYTPQQNGVAKR 160
            C  C  GK A+   +K  E +    LELVHTDI GP+  +SF  +R+ +I +DDY R   VY L+ KSEA  A + F   +     L IK  Q D+GGE+   AF   C + G K+  +AAY+PQQNGVA+R
Sbjct:   80 CEGCVFGKQARTNFQKKAEYRARRSLELVHTDICGPITSKSFSEKRYFIIFIDDYIRKTWVYFLKEKSEAFEAFKNFKAMVEKTTNLYIKALQSDRGGEYMSTAFTNYCEEQGIKRFLTAAYSPQQNGVAER 211
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9461.17210.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1J3GZK5_NOCCA7.650e-2739.52Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N6Q192_9ASTR1.150e-2539.16Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A5N6M7D6_9ASTR1.520e-2436.36Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A4Y1REW6_PRUDU2.870e-2435.76Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A4Y1R3A1_PRUDU2.880e-2435.76BURP domain-containing protein n=1 Tax=Prunus dulc... [more]
K8YS61_NANGC4.280e-2437.43Retrovirus-related pol polyprotein from transposon... [more]
A0A1J3ENS7_NOCCA5.340e-2435.33Retrovirus-related Pol polyprotein from transposon... [more]
A0A151SRN1_CAJCA6.750e-2440.60Retrovirus-related Pol polyprotein from transposon... [more]
A0A1J3CMV3_NOCCA8.370e-2435.93Retrovirus-related Pol polyprotein from transposon... [more]
A0A151RFW5_CAJCA9.900e-2443.94Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 53..160
e-value: 2.8E-14
score: 53.3
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 38..161
score: 14.699
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 44..161
e-value: 6.5E-20
score: 73.2
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 3..160
NoneNo IPR availablePANTHERPTHR11439:SF250coord: 3..160
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 51..160

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9461contigH-paniculata_contig9461:8038..8523 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9461.17210.1mRNA_H-paniculata_contig9461.17210.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig9461 8038..8523 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig9461.17210.1 ID=prot_H-paniculata_contig9461.17210.1|Name=mRNA_H-paniculata_contig9461.17210.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=162bp
LLHERLGHVRDLHTVAQQQNIKLREKLGVCSACERGKAAKQPVKKYREEQ
TTERLELVHTDIAGPVGESFEGRRFAVIVVDDYSRMRKVYALRRKSEALW
ALRQFGWDIAMANGLQIKNRQPDQGGEFTGEAFRQRCAKNGRKQEFSAAY
TPQQNGVAKRS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR036397RNaseH_sf
IPR039537Retrotran_Ty1/copia-like
IPR012337RNaseH-like_sf