mRNA_H-paniculata_contig946.17208.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig946.17208.1 vs. uniprot
Match: D8LII6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LII6_ECTSI) HSP 1 Score: 507 bits (1306), Expect = 6.140e-156 Identity = 356/813 (43.79%), Postives = 468/813 (57.56%), Query Frame = 1
Query: 1 MDFSAVARSVRRGEHCDRKSSAAETVRNAKASALLESASGIVAVVARXXXXXXXALMRSCLPHQQGNG-DGHARGMDGWRSLNAGLANIQEQLAEQSVPSHVFQSQLLSTLRHDAGAQHSRVESITLATSGEKNDESGIWSSVRINSWPCRLAVIWRLHESGLLPLSRLLEANETLPAHYFLGGDLYEASCED-----------SVDGLVRDMCALAMQAAPGNGRDQNQQGESGALLADVARYLFDLAYH---NLRGGDASGLCSASGEQVGPALSSTAARRVLDRLCC-----GPDTRGGLGKSRLHACLSVLAAIDPMKTCPHTR------CTREQDPAIAVATGQRRNKSVTWSTSPANDTV--VVFLARQLRLLVEGASGQSGEGLPLDCSLVSDAFGQRMVEQGVPSGLLVDIMRHFSSSLFVEILRSICLRAVTFAAHTTGSLYHKPLLQWEALTPIIGAAAVAYPHDAPRAISLLSTELTEMALNLAP-----PEGFNRDQEIACDRPQGMLILAVALRVVAAADVPLQGSR----GEEGGFYYRWFRSCFGVS---AQEPGEVQARLAPLGHVQDVTKSEEQHDGAPEMHRMEALRKAMEKERPAEILVETLCSSVPCDPVFVLEVHRDVLKTRLRHVYGLRIRLDFVDLAVTRLSDLKSQYGSGRRKATAG---HPSGSRNGVTGVHHWSG-DEGDSTNREVGFFLRQFKQSGEVPPVLRTEIRLQTKSWAKIRKILLAPPGERIAMPGENGNVLPATSGVVSEAIEHGQGGLRVEVSLKYRRLLVQQLKKHSLLSAKDYDSF 2307
MDF+A+ RS+RRGE + + SAA V N +L+S G VA VAR ALMR+ + G D A + W + +AGL +Q QLA SV S VFQ+QLLSTLR R + + G G P LA+ WRLH+ LLPLSRLLEANE+L + LG SCED S++ +V DM ALA +++ +++GE+ AL+++VA +LFDLAY + GG A G+ +G AL+S AAR VLDRLCC G ++R + RL CLSVLAAI P+ R E PA A A R + T + P V FLARQLRLL+E +SGQS D ++ +A V G SGLL I+RHF S+ +E LRSIC A AA TG HKPLL+WE L P++ AAA A+ + P A++ + TEL A+N P P GFN+ Q G+L+L+ A R+VA ADV +G E GG Y +W RSC GV+ A+ + +A AP Q+ T++ E H P++ +EA+++AM+K+R +E+L+ETLC SVP DPVFVLEVH+D L TRLR + +++R DF+DL VTRLSDL + G+ RR+ P G+ G D GD T REVGFFLRQFKQ+ +VP LR+ I Q KSWA+IRK+LLAPP ERIAMP ++G +LP S VV EAI G+GGLRVEVSLKYRRLLVQ+L K SL++A++++SF
Sbjct: 1 MDFTAL-RSIRRGEPDNSRHSAAGVVSNVNPCTILDSTCGQVAKVARDSAAAVVALMRNATNRELCRGSDEEATNL--WEAFDAGLLAVQAQLARGSVSSQVFQTQLLSTLR--------RGDPLRCEERGTGRRRGG-------ECPPVPLALYWRLHKLALLPLSRLLEANESLLSPEDLGR---HRSCEDQGRFFGGFHGDSLEAIVEDMRALAARSSGDEDSSDSRRGEAAALVSEVATHLFDLAYREGPSRSGGPADGI-----NTIG-ALASRAARTVLDRLCCDAKVFGANSRMEGQEWRLRGCLSVLAAISPVAAQAVPRGPGSAAAALEDKPAGAAA---RDGGACTVTGVPFGHFVSTAAFLARQLRLLMENSSGQSEHAQGGDAGVL-EAVETADVRDGAMSGLLAAILRHFPSAHIIEALRSICREAADKAADATGWRLHKPLLRWETLGPVVRAAATAHADEVPAAVADIGTELAAAAVNAVPSGNSRPTGFNQQQ--------GVLVLSAAFRLVAEADVCSRGGTDKRAAEGGGLYAQWVRSCLGVAGGAAKVVDQAEAMPAP----QEGTRASEPHGERPQLSCLEAVQEAMKKQRASEVLMETLCLSVPYDPVFVLEVHKDALITRLRASFSVQVR-DFIDLVVTRLSDLNGRGGAQRRREGGEGRQRPRGAEGSCNRDSALPGRDCGDPTTREVGFFLRQFKQTDKVPEALRSLIVFQPKSWARIRKVLLAPPAERIAMPDDSGRILPPDSAVVKEAIGSGEGGLRVEVSLKYRRLLVQKLAKSSLITAQEHESF 769
BLAST of mRNA_H-paniculata_contig946.17208.1 vs. uniprot
Match: A0A6H5K6S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6S2_9PHAE) HSP 1 Score: 468 bits (1203), Expect = 3.160e-141 Identity = 347/878 (39.52%), Postives = 454/878 (51.71%), Query Frame = 1
Query: 64 AAETVRNAKASALLESASGIVAVVARXXXXXXXALMRSCLPHQQGNG-DGHARGMDGWRSLNAGLANIQEQLAEQSVPSHVFQSQLLSTLRHDAGAQHSRVESITLATSGEKNDESGIWSSVRINSWPCRLAVIWRLHESGLLPLSRLLEANETLPAHYFLGGDLYEASCED-----------SVDGLVRDMCALAMQAAPGNGRDQNQQGESGALLADVARYLFDLAYHNLRGGDASGLCSASGEQVGPALSSTAARRVLDRLCCGPDTRGGLGK-SRLHACLSVLAAIDPMKTC-----PHTRCTREQDPAIAVATGQRRNKSVTWSTSPANDTVVVFLARQLRLLVEGASGQSGEG--LPLDCSL------------------------VSDAFGQRMVEQGVPSGLLVDIMRHFSSSLFVEILRSICLRAVTFAAHTTGSLYHKPLLQWEALTPIIGAAAVAYPHDAPRAISLLSTELTEMALNLAP-----PEGFNRDQEIACDRPQGMLILAVALRVVAAADVPLQGSR----GEEGGFYYRWFRSCFGVS---AQEPGEVQARLAPLGHVQDVTKSEEQHDGAPEMH------------------------------------RMEALRKAMEKERPAEILVETLCSSVPCDPVFVLEVHRDVLKTRLRHVYGLRIRL-----------DFVDLAVTRLSDLKSQYGS--------GRRKATAGHPSGSRNGVTGVHHWSGDEGDSTNRE-------------------VGFFLRQFKQSGEVPPVLRTEIRLQTKSWAKIRKILLAPPGERIAMPGENGNVLPATSGVVSEAIEHGQGGLRVEVSLKYRRLLVQQLKKHSLLSAKDYDSF 2307
AAE V N +L+S G VA VAR ALMR+ + G D A + W + +AGL +Q QLA SV S VFQ+QLLSTLR + +E G P LA+ WRLH+ LLPLSRLLEANE+LP+ LG + SCED S++ +V DM ALA +++ G R +++GE+ AL+++VA +LFDLAY R G + A G AL+S AAR VLDRLCC G G+ SRL CLSVLAAI P+ T P + +D + A VT + + FL+RQLRLL+E +SGQ G+G +P + S V +A V G SGLL I+RHF S+ +E LRSIC A AA G HKPLL+WE L P++ AA+ A+ + P A++ + TEL A+N P P GFN+ Q G+L+L+ A R+VA ADV +G E GG Y +W RSC GV+ A+ + +A AP Q+ T++ E H P++ R +A+++AM+K+R +E+L+ETLC SVP DPVFVLE H+DVL TRLR Y I L DF+DL VTRLSDL + G+ GR++ S +R+ D GD T RE VGFFLRQFKQ+G+VP LR+ I Q KSWA+IRK+LLAPP ERIAMP +NG +LP S VV EAI G+GGLRVEVSLKYRRLLVQ+L K SL++A++++SF
Sbjct: 10 AAEVVGNVNPCTILDSTCGQVAKVARDSAAAVVALMRNASNRELCRGSDEEATNL--WEAFDAGLLAVQAQLARGSVSSQVFQTQLLSTLRRG---------------DPRRCEEKGTGRRRGGECPPVPLALYWRLHKLALLPLSRLLEANESLPSPGDLG---WHRSCEDQRMFFGGLHGDSLEAIVEDMRALAARSSGGKDRGDSRRGEAAALVSEVATHLFDLAY---REGPSRSGGPADGTNTTGALASRAARTVLDRLCCDAKVFGMEGQESRLRGCLSVLAAISPVATPAVPRGPGSAAAALEDESAGAAARDGGACIVTGIPMGQDVSTAAFLSRQLRLLMENSSGQIGKGPVVPSETSKPMRPFLLKLRSFNLEEHALGGDTGVLEAAETADVRDGAMSGLLAAILRHFPSAHIIEALRSICREAADKAADAAGWRLHKPLLRWETLGPVVRAASTAHADEVPAAVADIGTELAAAAVNAVPSGNSRPTGFNQQQ--------GVLVLSAAFRLVAEADVCSRGGTDKGAAEGGGLYAQWVRSCLGVAGGAAKPVDQAEAMPAP----QEGTRASEPHGERPQLSCLEVCEAWWQTLIGGKTYVGGDSTSAANALCHDVLGRRQAVQEAMKKQRASEVLMETLCLSVPYDPVFVLEAHKDVLITRLRVGYLFLICLPFRASFSVQVRDFIDLVVTRLSDLNGRGGAQRLREGGEGRQRTRGAEGSCNRDSALPGR----DCGDPTTREARTSPPLQIDYVPTLGRHEVGFFLRQFKQTGKVPEALRSLIVFQPKSWARIRKVLLAPPAERIAMPDDNGRILPLDSAVVKEAIGSGEGGLRVEVSLKYRRLLVQKLAKSSLITAQEHESF 848 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig946.17208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig946.17208.1 >prot_H-paniculata_contig946.17208.1 ID=prot_H-paniculata_contig946.17208.1|Name=mRNA_H-paniculata_contig946.17208.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=771bp MDFSAVARSVRRGEHCDRKSSAAETVRNAKASALLESASGIVAVVARESAback to top mRNA from alignment at H-paniculata_contig946:24293..29241+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig946.17208.1 ID=mRNA_H-paniculata_contig946.17208.1|Name=mRNA_H-paniculata_contig946.17208.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4949bp|location=Sequence derived from alignment at H-paniculata_contig946:24293..29241+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig946:24293..29241+ >mRNA_H-paniculata_contig946.17208.1 ID=mRNA_H-paniculata_contig946.17208.1|Name=mRNA_H-paniculata_contig946.17208.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4626bp|location=Sequence derived from alignment at H-paniculata_contig946:24293..29241+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |