mRNA_H-paniculata_contig946.17206.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig946.17206.1
Unique NamemRNA_H-paniculata_contig946.17206.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig946.17206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig946contigH-paniculata_contig946:5748..6353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size230
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931175.6406536-CDS-H-paniculata_contig946:5748..59001622931175.6406536-CDS-H-paniculata_contig946:5748..5900Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig946 5749..5900 -
1691481624.540972-CDS-H-paniculata_contig946:5748..59001691481624.540972-CDS-H-paniculata_contig946:5748..5900Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig946 5749..5900 -
1622931175.6609914-CDS-H-paniculata_contig946:6277..63531622931175.6609914-CDS-H-paniculata_contig946:6277..6353Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig946 6278..6353 -
1691481624.5497217-CDS-H-paniculata_contig946:6277..63531691481624.5497217-CDS-H-paniculata_contig946:6277..6353Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig946 6278..6353 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig946.17206.1prot_H-paniculata_contig946.17206.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig946 5749..6353 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig946.17206.1

>prot_H-paniculata_contig946.17206.1 ID=prot_H-paniculata_contig946.17206.1|Name=mRNA_H-paniculata_contig946.17206.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
EGPVPESLGGLQQLQVLLLHRNMFDGILPPGVVSLLHSGQVRQFSFHGNK
VYKDIRRETRVEGFGDLTFPLDAVTI
back to top

mRNA from alignment at H-paniculata_contig946:5748..6353-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig946.17206.1 ID=mRNA_H-paniculata_contig946.17206.1|Name=mRNA_H-paniculata_contig946.17206.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=606bp|location=Sequence derived from alignment at H-paniculata_contig946:5748..6353- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGGACCAGTACCGGAAAGCTTAGGAGGACTTCAGCAGCTTCAAGTCTT
GCTATTGCACCGGAACATGTTCGATGGTGGGGTAATGTGCATGATGCCAC
TACATGTAGTATCTTTGTTTCATCGGGTGGAATTGACGAAATTTAGTAGT
AGTTCATGGATAAGGATTATACGCCGTTCTACTAGGTTATAGGCGCATTT
TGCACCGCGAATCAACTCTCAAAGTTTGAGATAGGAAGACCTCAATAATA
TAGACTATGAACTGTTGTGGTCGGAGAGTAAATGCAACATCGTATGCCGC
AGCCACGGACTGTGGATGTTCGCAATCGGTTTTATAATTTTGATGGAAGC
GATTCAATGTGACACTCCACAAGAGCTAGTGGCTCGTGTTGCTTTGAAGC
TGGATGTCCTATTGACCTTGATTCGGTCATTTTTGTCCGCTATCGGTGCT
CAGGTATTCTGCCCCCTGGGGTGGTATCTCTTCTGCATAGCGGTCAAGTG
CGACAGTTCTCTTTTCATGGAAATAAAGTTTACAAAGACATTCGACGGGA
GACTCGAGTGGAGGGCTTCGGGGATTTAACTTTCCCGCTGGATGCCGTAA
CTATAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig946:5748..6353-

>mRNA_H-paniculata_contig946.17206.1 ID=mRNA_H-paniculata_contig946.17206.1|Name=mRNA_H-paniculata_contig946.17206.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig946:5748..6353- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGGACCAGTACCGGAAAGCTTAGGAGGACTTCAGCAGCTTCAAGTCTT
GCTATTGCACCGGAACATGTTCGATGGAAGGACCAGTACCGGAAAGCTTA
GGAGGACTTCAGCAGCTTCAAGTCTTGCTATTGCACCGGAACATGTTCGA
TGGTATTCTGCCCCCTGGGGTGGTATCTCTTCTGCATAGCGGTCAAGTGC
GACAGTTCTCTTTTCATGGAAATAAAGTTTACAAAGACATTCGACGGGAG
ACTCGAGTGGAGGGCTTCGGGGATTTAACTTTCCCGCTGGATGCCGTAAC
TATAGTATTCTGCCCCCTGGGGTGGTATCTCTTCTGCATAGCGGTCAAGT
GCGACAGTTCTCTTTTCATGGAAATAAAGTTTACAAAGACATTCGACGGG
AGACTCGAGTGGAGGGCTTCGGGGATTTAACTTTCCCGCTGGATGCCGTA
ACTATA
back to top