mRNA_H-paniculata_contig9456.17202.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9456.17202.1
Unique NamemRNA_H-paniculata_contig9456.17202.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig9456.17202.1 vs. uniprot
Match: D7FXI7_ECTSI (Aldolase_II domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI7_ECTSI)

HSP 1 Score: 416 bits (1068), Expect = 1.140e-143
Identity = 200/251 (79.68%), Postives = 221/251 (88.05%), Query Frame = 1
Query:    1 AWYLDAPENEASETLLKELGIVLYQVHVK-GSEDMNVQLWKLAQARLLLHAKSGADGADRGAIQIGDLPSTAFIHDNMEDQGGEARFDALEGMYCVWGGEAFVDVRDWADCWVRVRLRQGDVVLIPPNMFHRATPKSPGARLVQVRIKTGNGGVNVDIRDPRTAPAPGSSGTMPGDPRELVASLCRQFYHLGWVTGTGGSISIRRANGHGNRIFMTPSGVQKERLRASDLFVLDQQGGILQHPWEQRSGTR 750
            AWYLDAPENEAS TLL ELGIV Y VH++ GS D+N+QLWKLAQARL +H+KSG D  D+GAIQIGDLP+TAF HD+MEDQGGEARFD LEGMYCVWGGEAFVDVRDW DCWVRVRL+ GDVVLIPPN FHRATPK+PGARLVQVR+KTG+GGVNV+IRDPRT PAPGSSGT+ GDPRELVASLCRQFY LGWVTGTGGSISIR    HGNR+FMTPSGVQKERL+ SDLF+LD+QG +L  P   RSG +
Sbjct:   25 AWYLDAPENEASPTLLAELGIVDYAVHLENGSPDVNIQLWKLAQARLAMHSKSGGDAIDKGAIQIGDLPATAFTHDDMEDQGGEARFDCLEGMYCVWGGEAFVDVRDWVDCWVRVRLQPGDVVLIPPNRFHRATPKTPGARLVQVRVKTGDGGVNVEIRDPRTTPAPGSSGTLAGDPRELVASLCRQFYDLGWVTGTGGSISIR----HGNRVFMTPSGVQKERLKPSDLFILDRQGLVLARP-STRSGAK 270          
BLAST of mRNA_H-paniculata_contig9456.17202.1 vs. uniprot
Match: A0A6H5JCG2_9PHAE (Probable methylthioribulose-1-phosphate dehydratase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG2_9PHAE)

HSP 1 Score: 417 bits (1073), Expect = 3.880e-137
Identity = 199/251 (79.28%), Postives = 222/251 (88.45%), Query Frame = 1
Query:    1 AWYLDAPENEASETLLKELGIVLYQVHVK-GSEDMNVQLWKLAQARLLLHAKSGADGADRGAIQIGDLPSTAFIHDNMEDQGGEARFDALEGMYCVWGGEAFVDVRDWADCWVRVRLRQGDVVLIPPNMFHRATPKSPGARLVQVRIKTGNGGVNVDIRDPRTAPAPGSSGTMPGDPRELVASLCRQFYHLGWVTGTGGSISIRRANGHGNRIFMTPSGVQKERLRASDLFVLDQQGGILQHPWEQRSGTR 750
            AWYLDAPENEAS TLL ELGIV Y VH++ GS D+N+QLWKLAQARL +H+KSG D   +GAIQIGDLP+TAF HD+MEDQGGEARFD LEGMYCVWGGEAFVDVRDWADCWVRVRL+ G+VVLIPPN FHRATPK+PGARL+QVR+KTG+GGVNV+IRDPRT PAPGSSGT+ GDPRELVASLCRQFY LGWVTGTGGSISIR    HGNR+FMTPSGVQKERL+ SDLF+LD+QG +L  PW  RSG +
Sbjct:   33 AWYLDAPENEASPTLLAELGIVEYAVHLENGSPDVNIQLWKLAQARLAMHSKSGGDAMGKGAIQIGDLPATAFTHDDMEDQGGEARFDCLEGMYCVWGGEAFVDVRDWADCWVRVRLQPGEVVLIPPNRFHRATPKTPGARLMQVRVKTGDGGVNVEIRDPRTTPAPGSSGTLAGDPRELVASLCRQFYDLGWVTGTGGSISIR----HGNRVFMTPSGVQKERLKPSDLFILDRQGHVLARPWT-RSGAK 278          
BLAST of mRNA_H-paniculata_contig9456.17202.1 vs. uniprot
Match: A0A7S3XX92_HETAK (Probable methylthioribulose-1-phosphate dehydratase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XX92_HETAK)

HSP 1 Score: 136 bits (343), Expect = 3.440e-34
Identity = 91/244 (37.30%), Postives = 126/244 (51.64%), Query Frame = 1
Query:    4 WYLDAPENEASETLLKELGIVLYQVHVKGSEDMNVQLWKLAQARLLLHAKSGADGADRGAIQIGDLPSTAFIHDNMEDQGGEARFDALEGMYCVWGGEAFVDVRDWADCWVRVRLRQGDVVLIPPNMFHRAT-PKSPGARLVQVRIKTGNGGVNVDIRDPRTAPAPGSSGTMPGDP--RELVASLCRQFYHLGWVTGTGGSISIRRANGHGNRIFMTPSGVQKERLRASDLFVLDQQGGILQHP 726
            WYLD P+  AS+ +L ELGI ++  +    E   +    LA   L L +   A   +    ++G  PS     + + + G E +    + +Y V  G  F+DVRD AD W+R+ L + +++LIPP ++ R    +     L                 DPR         T    P  R LV  LC++FY LGWVTGTGGSIS+R    +GNRI+MTPSGVQKER+   DLFVLD +G +L HP
Sbjct:   20 WYLDNPDEPASKAILAELGIKVWDDYSDEDELKGI----LALENLTLKSSKYALSPE----ELG--PS---FEEYVAEMGKEHKISG-DVVYRVVSGSIFIDVRDDADEWIRILLARSELILIPPTVYRREILTEQQYIELESYESPNKGAARTAREEDPRV--------THLSHPYTRHLVVDLCKEFYDLGWVTGTGGSISVR----YGNRIYMTPSGVQKERMTPEDLFVLDLEGRVLSHP 237          
BLAST of mRNA_H-paniculata_contig9456.17202.1 vs. uniprot
Match: H3GCA5_PHYRM (Aldolase_II domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GCA5_PHYRM)

HSP 1 Score: 118 bits (296), Expect = 8.670e-27
Identity = 68/156 (43.59%), Postives = 95/156 (60.90%), Query Frame = 1
Query:  262 ALEGMYCVWGGEAFVDVRDWADCWVRVRLRQGDVVLIPPNMFHRATPKSPGARLVQVRIKTGNGGVNVDIRDPRTAPAPGSSGTMPGDP-RELVASLCRQFYHLGWVTGTGGSISIRRANGHGNRIFMTPSGVQKERLRASDLFVLDQQGGILQHP 726
            A++ +Y +  G A++DVRD ADCWVR  L +G  V +  +   R  P S  A  VQ+ +++ +G  ++  R  R A A   S  +  +  RELV  LCR +Y   W+TGTGG++S+R    HG RI++TPSGV KERL+  DL+VLD  GGIL  P
Sbjct:   65 AVDVVYNIVKGRAYLDVRDSADCWVRCTLTEGMRVALSSHTLRRFVPVSSSA--VQL-LESSSGARSLTPRYTRPADAASHSTLLDANKCRELVCELCRLYYSTEWMTGTGGAMSLR----HGERIYVTPSGVPKERLQPKDLYVLDMDGGILSSP 213          
BLAST of mRNA_H-paniculata_contig9456.17202.1 vs. uniprot
Match: A0A4D9D244_9STRA (Probable methylthioribulose-1-phosphate dehydratase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D244_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.370e-26
Identity = 87/275 (31.64%), Postives = 125/275 (45.45%), Query Frame = 1
Query:    1 AWYLDAPENEASETLLKELGIVLYQVHVKGSEDMNVQLWKLAQARLLLHAKSGADGADRGAIQIGDLPSTAFIHDNMEDQGGEARFDALEGM--YCVWGGEAFVDVRDWADCWVRVRLRQGDVVLIPPNMFHRATPKSPGARL---VQVRIKTGNG-------------GVNVDIRDPRTAPAPGSSGTMP---------GDPRELVASLCRQFYHLGWVTGTGGSISIRRANGHGNRIFMTPSGVQKERLRASDLFVLDQQGGILQHPWEQRSG 744
            AWYL+ P    +  +L+ELG  + +                        A  G D     AI   +L   A   D +++ G E    A+  +  + V  G+ ++DVRD AD W+RV L + D + +P +++ R  P +    +   +  R    NG             G    ++  R A        M          G  ++L+  LCRQFY LGWVTGTGGSISIR     GNR+FMTPSGVQKER+   +L++LD +G  L  P E + G
Sbjct:    3 AWYLNDPHQACTPAILEELGACVGKA---------------------FEADKGPDTLFLTAISEKEL--RAAFADTLKEFGREHCMGAVSEVQDFNVVDGQVYIDVRDSADAWIRVLLFKEDRLTLPSSVWRRLLPTTEDTHVDVAIASRPDPSNGVSKGARNGAGRKEGSAFSVKTYRFASPADERQAMAVWTQRRGQDGGTQQLIVDLCRQFYDLGWVTGTGGSISIRE----GNRVFMTPSGVQKERILPEELYILDMRGNHLYVPPESQPG 250          
BLAST of mRNA_H-paniculata_contig9456.17202.1 vs. uniprot
Match: A0A3F2RW29_9STRA (Multifunctional fusion protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RW29_9STRA)

HSP 1 Score: 111 bits (278), Expect = 2.960e-24
Identity = 79/241 (32.78%), Postives = 109/241 (45.23%), Query Frame = 1
Query:    7 YLDAPENEASETLLKELGIVLYQVHVKGSEDMNVQLWKLAQARLLLHAKSGADGADRGAIQIGDLPSTAFIHDNMEDQGGEARFDALEGMYCVWGGEAFVDVRDWADCWVRVRLRQGDVVLIPPNMFHRATPKSPGARLVQVRIKTGNGGVNVDIRDPRTAPAPGSSGTMPGDP-RELVASLCRQFYHLGWVTGTGGSISIRRANGHGNRIFMTPSGVQKERLRASDLFVLDQQGGILQHP 726
            YLD P + AS  +L+E+G+ +              L  ++   +L    S + G                                   +Y V  G  F+DVRD ADCWVR  L +G  V +      R      G   VQ+ ++  NG  ++  R  R A +   +     D  RELV  LCRQ+Y   W+TGTGG++S+R    HG RI++TPSGV KERL+  DL+VLD  G IL  P
Sbjct:  713 YLDTPSDRASLAILREIGVSIADSSSSSPSSKEGSLVDVSSDEVLQSEHSSSTGI----------------------------------VYKVVKGGVFLDVRDSADCWVRCSLTEGMKVTLGMRTLRRFV--LVGGNCVQL-MENSNGLRSLTARYTRPADSESLNALGGADECRELVCELCRQYYTTEWMTGTGGAMSLR----HGERIYVTPSGVPKERLQPEDLYVLDLDGAILSSP 912          
BLAST of mRNA_H-paniculata_contig9456.17202.1 vs. uniprot
Match: A0A3R7H3A5_9STRA (Multifunctional fusion protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H3A5_9STRA)

HSP 1 Score: 110 bits (276), Expect = 4.240e-24
Identity = 79/241 (32.78%), Postives = 108/241 (44.81%), Query Frame = 1
Query:    7 YLDAPENEASETLLKELGIVLYQVHVKGSEDMNVQLWKLAQARLLLHAKSGADGADRGAIQIGDLPSTAFIHDNMEDQGGEARFDALEGMYCVWGGEAFVDVRDWADCWVRVRLRQGDVVLIPPNMFHRATPKSPGARLVQVRIKTGNGGVNVDIRDPRTAPAPGSSGTMPGDP-RELVASLCRQFYHLGWVTGTGGSISIRRANGHGNRIFMTPSGVQKERLRASDLFVLDQQGGILQHP 726
            YLD P + AS  +L+E+G+ +              L  ++   +L    S + G                                    Y V  G  F+DVRD ADCWVR  L +G  V +      R      G   VQ+ ++  NG  ++  R  R A +   +     D  RELV  LCRQ+Y   W+TGTGG++S+R    HG RI++TPSGV KERL+  DL+VLD  G IL  P
Sbjct:   17 YLDTPSDRASLAILREIGVSIADSSSSSPSSKEGSLVDVSSDEVLQSEHSSSTGI----------------------------------TYKVVKGGVFLDVRDSADCWVRCSLTEGMKVTLGMRTLRRFV--LVGGNCVQL-MENSNGLRSLTARYTRPADSESLNALGGADECRELVCELCRQYYTTEWMTGTGGAMSLR----HGERIYVTPSGVPKERLQPEDLYVLDLNGAILSSP 216          
BLAST of mRNA_H-paniculata_contig9456.17202.1 vs. uniprot
Match: K3WWJ7_GLOUD (Probable methylthioribulose-1-phosphate dehydratase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WWJ7_GLOUD)

HSP 1 Score: 110 bits (275), Expect = 5.910e-24
Identity = 66/160 (41.25%), Postives = 86/160 (53.75%), Query Frame = 1
Query:  277 YCVWGGEAFVDVRDWADCWVRVRLRQGDVVLIPPNMFHRATPKSPGA--RLVQVRIKTGNGGVNVDIRDPRTAPAPGSSGTMPGDPRELVASLCRQFYHLGWVTGTGGSISIRRANGHGNRIFMTPSGVQKERLRASDLFVLDQQGGILQHPWEQRSGTR 750
            Y +  G  F+DVRD  D W+R+ L  G  V +   + HR  P +  A    V        G   +  R  +  P+           REL+  LCRQFY  GWVTGTGGSISIR     GNRI+MTPSGVQKER++  +L++LD  G IL  P +Q+ G +
Sbjct:   76 YVLKSGRVFLDVRDSGDSWIRILLNAGTPVTLAAGVLHRFVPDATYAPHHAVTATESVAEGDRCLVARFDK--PSDAIQTMQYHKYRELICELCRQFYQAGWVTGTGGSISIR----FGNRIYMTPSGVQKERIQPDELYLLDIDGAILNAP-KQKPGQK 228          
BLAST of mRNA_H-paniculata_contig9456.17202.1 vs. uniprot
Match: A0A6G0SPN2_9STRA (Probable methylthioribulose-1-phosphate dehydratase n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6G0SPN2_9STRA)

HSP 1 Score: 108 bits (269), Expect = 3.670e-23
Identity = 77/241 (31.95%), Postives = 112/241 (46.47%), Query Frame = 1
Query:    7 YLDAPENEASETLLKELGIVLYQVHVKGSEDMNVQLWKLAQARLLLHAKSGADGADRGAIQIGDLPSTAFIHDNMEDQGGEARFDALEGMYCVWGGEAFVDVRDWADCWVRVRLRQGDVVLIPPNMFHRATPKSPGARLVQVRIKTGNGGVNVDIRDPRTAPAPGSSGTMPGDP-RELVASLCRQFYHLGWVTGTGGSISIRRANGHGNRIFMTPSGVQKERLRASDLFVLDQQGGILQHP 726
            YLD+P + AS  +L+E+G+ + +     S +                 ++  D A   A+Q  +  S A +                   Y V  G   +D+RD ADCWVR  L +G    +      R  P +  A  +   + +     ++  R  R A A   S  +  +  RELV  LCR +Y   W+TGTGG++S+R    HG RI++TPSGV KERL+  DL+VLD  GGIL  P
Sbjct:   15 YLDSPSDRASLAVLREIGVSVAEFSPSSSLEKE---------------ETAVDVATDAALQ-NEHSSAANVE------------------YKVVKGRVHLDMRDSADCWVRCTLTEGMKASLSLRALRRFVPIAGNAAQL---VDSSKAARSLTARYTRPADAASHSTLVDANECRELVCELCRLYYTTEWMTGTGGAMSLR----HGERIYVTPSGVPKERLQPEDLYVLDLDGGILSSP 214          
BLAST of mRNA_H-paniculata_contig9456.17202.1 vs. uniprot
Match: A0A8K1FFG3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FFG3_PYTOL)

HSP 1 Score: 107 bits (266), Expect = 9.280e-23
Identity = 67/158 (42.41%), Postives = 83/158 (52.53%), Query Frame = 1
Query:  277 YCVWGGEAFVDVRDWADCWVRVRLRQGDVVLIPPNMFHRATPKSPGARLVQVRIKTGNGGVNVDIRDPRTAPAPGSSGTMPGDPRELVASLCRQFYHLGWVTGTGGSISIRRANGHGNRIFMTPSGVQKERLRASDLFVLDQQGGILQHPWEQRSGTR 750
            Y V  G  F+DVRD  D W+R  L  G  V +    F R          VQV +        +  R  + + A           REL+  LCRQFY  GWVTGTGGSISIR    +GNRI+MTPSGVQKER+   DL++LD  G IL  P +Q+ G +
Sbjct:   67 YVVTSGRVFLDVRDAGDAWIRSLLTPGVQVSLVHTTFRRFVLDHTLPADVQVAVLPVTKSGELIPRFNKASDA--LEVVQYHKYRELICELCRQFYEAGWVTGTGGSISIR----YGNRIYMTPSGVQKERIEPDDLYMLDLDGAILDAP-QQKPGKK 217          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9456.17202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXI7_ECTSI1.140e-14379.68Aldolase_II domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JCG2_9PHAE3.880e-13779.28Probable methylthioribulose-1-phosphate dehydratas... [more]
A0A7S3XX92_HETAK3.440e-3437.30Probable methylthioribulose-1-phosphate dehydratas... [more]
H3GCA5_PHYRM8.670e-2743.59Aldolase_II domain-containing protein n=1 Tax=Phyt... [more]
A0A4D9D244_9STRA1.370e-2631.64Probable methylthioribulose-1-phosphate dehydratas... [more]
A0A3F2RW29_9STRA2.960e-2432.78Multifunctional fusion protein n=2 Tax=Phytophthor... [more]
A0A3R7H3A5_9STRA4.240e-2432.78Multifunctional fusion protein n=2 Tax=Phytophthor... [more]
K3WWJ7_GLOUD5.910e-2441.25Probable methylthioribulose-1-phosphate dehydratas... [more]
A0A6G0SPN2_9STRA3.670e-2331.95Probable methylthioribulose-1-phosphate dehydratas... [more]
A0A8K1FFG3_PYTOL9.280e-2342.41Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9456contigH-paniculata_contig9456:5221..9424 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score414.8
Seed ortholog evalue2.8e-113
Seed eggNOG ortholog2880.D7FXI7
Preferred nameMDE1
KEGG rclassRC01866,RC01939,RC02018,RC02118,RC02779
KEGG koko:K08964,ko:K08967,ko:K16054
KEGG ReactionR07363,R07364,R07392,R07395
KEGG Pathwayko00270,ko01100,map00270,map01100
KEGG ModuleM00034
Hectar predicted targeting categoryother localisation
GOsGO:0000096,GO:0000097,GO:0001932,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008219,GO:0008270,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009966,GO:0009987,GO:0010646,GO:0010941,GO:0012501,GO:0016043,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0017144,GO:0019220,GO:0019222,GO:0019509,GO:0019752,GO:0022607,GO:0023051,GO:0031323,GO:0031399,GO:0032268,GO:0042325,GO:0042802,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043094,GO:0043102,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043408,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046570,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0048583,GO:0050789,GO:0050794,GO:0051171,GO:0051174,GO:0051246,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0060255,GO:0060548,GO:0065003,GO:0065007,GO:0070269,GO:0070372,GO:0071265,GO:0071267,GO:0071704,GO:0071840,GO:0080090,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902531
EggNOG free text desc.methylthioribulose 1-phosphate dehydratase activity
EggNOG OGsCOG0235@1,KOG2631@2759
EC1.13.11.53,1.13.11.54,3.1.3.77,4.2.1.109
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons5
Model size750
Cds size750
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9456.17202.1prot_H-paniculata_contig9456.17202.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9456 5221..9424 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931175.069717-CDS-H-paniculata_contig9456:5220..53041622931175.069717-CDS-H-paniculata_contig9456:5220..5304Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9456 5221..5304 +
1691481624.3464057-CDS-H-paniculata_contig9456:5220..53041691481624.3464057-CDS-H-paniculata_contig9456:5220..5304Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9456 5221..5304 +
1622931175.0858848-CDS-H-paniculata_contig9456:5483..56391622931175.0858848-CDS-H-paniculata_contig9456:5483..5639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9456 5484..5639 +
1691481624.3579245-CDS-H-paniculata_contig9456:5483..56391691481624.3579245-CDS-H-paniculata_contig9456:5483..5639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9456 5484..5639 +
1622931175.1066968-CDS-H-paniculata_contig9456:6421..66221622931175.1066968-CDS-H-paniculata_contig9456:6421..6622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9456 6422..6622 +
1691481624.3660054-CDS-H-paniculata_contig9456:6421..66221691481624.3660054-CDS-H-paniculata_contig9456:6421..6622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9456 6422..6622 +
1622931175.1215491-CDS-H-paniculata_contig9456:8606..87851622931175.1215491-CDS-H-paniculata_contig9456:8606..8785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9456 8607..8785 +
1691481624.3803012-CDS-H-paniculata_contig9456:8606..87851691481624.3803012-CDS-H-paniculata_contig9456:8606..8785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9456 8607..8785 +
1622931175.139149-CDS-H-paniculata_contig9456:9294..94241622931175.139149-CDS-H-paniculata_contig9456:9294..9424Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9456 9295..9424 +
1691481624.3888502-CDS-H-paniculata_contig9456:9294..94241691481624.3888502-CDS-H-paniculata_contig9456:9294..9424Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9456 9295..9424 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9456.17202.1

>prot_H-paniculata_contig9456.17202.1 ID=prot_H-paniculata_contig9456.17202.1|Name=mRNA_H-paniculata_contig9456.17202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=250bp
AWYLDAPENEASETLLKELGIVLYQVHVKGSEDMNVQLWKLAQARLLLHA
KSGADGADRGAIQIGDLPSTAFIHDNMEDQGGEARFDALEGMYCVWGGEA
FVDVRDWADCWVRVRLRQGDVVLIPPNMFHRATPKSPGARLVQVRIKTGN
GGVNVDIRDPRTAPAPGSSGTMPGDPRELVASLCRQFYHLGWVTGTGGSI
SIRRANGHGNRIFMTPSGVQKERLRASDLFVLDQQGGILQHPWEQRSGTR
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mRNA from alignment at H-paniculata_contig9456:5221..9424+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9456.17202.1 ID=mRNA_H-paniculata_contig9456.17202.1|Name=mRNA_H-paniculata_contig9456.17202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4204bp|location=Sequence derived from alignment at H-paniculata_contig9456:5221..9424+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCTGGTATCTCGACGCTCCGGAAAACGAGGCGTCCGAGACGCTTCTGAA GGAGCTGGGGATTGTGCTTTACCAAGTGCATGTGGTGAGTCAATCGTGAA GCTACGGTGCGGTTTAGTAGGGGCGATGTCTTGTGCTACAGACCCCCGTG TGTCGCACTTAGTGCACCACAACTTGAAGCAAAAGCGAGAAGCCTGGGAT TCATTACATTTATTTTCGTCGAAAACCCGCACCTTGTCATGATCCACATC TTATTGTCGGCAGAAGGGGAGTGAAGACATGAACGTTCAGCTGTGGAAGT TGGCGCAAGCGAGGCTCCTGCTGCACGCCAAGTCTGGAGCGGATGGGGCG GACAGGGGCGCCATTCAGATCGGGGATCTGCCATCCACGGCATTTATTCA TGACAACATGGAAGATCAGGTGTGTGTGTGTGTGTGCTTGTGTGTTTGTC TTCTTTTTTTTTCGTATAAAATATCAACGAAGTTAGCTTTTGCTTTGTGA CGATTTTTGTGCTATTTCGACATGGGTTTCTCCGTAAAAAGAAAAATGAT TTAAAAACCGATGACATTTTTGCATCGCTGGAAAAAACGTGGGTCTCAGA CAGTGAAAGTTTCTGCAGGCCAACCGGGGTCATTCATATCATTTTGAAAC AATGTGCATATGATATTGTTTTGTTTTGTCCCCTACACTACCGGGTAAGT CAGATCGTTCGTCGGACACGCGATTAGATAATGCTATCGGCTCCCACAGA TAATATGTTATGGCTTTGGTCAACGGGGAACTTATTTAGTACAAGTTTAT GCCCTGTCAAATGCCGAAGTTGACTGGCTACTTTGATTTCATTAAGATTA CCCCCACCCCTACCACAATTCCCCCCCCCCCTCCATTGTTCCGTCTTTTC AAGGATGCGTGGTCAATGGTCTCATATTTAAGGCATGCGAAACAGGAGTA TCCCCGATTCAGGTTTTTCAAATGGATGATAACTATATATGGTCATGATC CATGATCCGTGACCGTGGGCTAAATTAAATGACCTCAGCATTTCAATGCA TCCATTTCGTAAAATTGGCACATACAGGGAGATGTTGAGAGTTTATTATA CGTAATCATTATTTTAGGGTCTCAGGCTATAAGTTCCCCTCTCCCCTTTC TCCCCTGTAATTTGAGTACCCCCTATCCCCACCCGTCGGGTGTTTCGACA GGGAGGTGAAGCCCGTTTCGACGCTTTGGAAGGCATGTACTGCGTGTGGG GCGGCGAGGCCTTCGTCGACGTGAGGGACTGGGCGGACTGCTGGGTACGC GTGCGCTTGCGGCAGGGGGACGTCGTGCTTATTCCCCCGAACATGTTTCA CCGAGCTACACCGAAGAGCCCAGGCGCCCGGCTGGTGCAAGTACGGATTA AGGTGCGGTAACCGTTCTGGCGCCACGCTATATTATTCCGGACATGAGAA GTTGGCAGTCCAGGGCTCTTGGGGAAGAGATGGCACACAAAAGAGAGGAG GAACTGAGCGGTATCGGTGAAATATAGAAAATGACCAGTAAAATATGCGT AGACGGACAAGAAGCAGACCATCGCGGCGGTACATGTGTTTTTCTCGTTA GCGTTGGGCGGCATTTTGCTGGAAATATCCTACCCTCTCATTATCACGGT GACGTGGGCTGCTGTGCTCTGACGAAGGGAGGGCATACATGGAGTGATGG GTTCCATCAAGGTGCCGTGTGATGCGGTGCTGTGAATAGATGATACAGAC AGTCAGAGCACGATGACTGACTGAGGGTAATACATGGACCACCTATCTGT ACCTCCATCTCCTCCTCTATTTCATCGACCATCTGTATTCTACACAGTAC ATTCAGACTGCCAGCTGTACCAAGTGATTTTTTTTAACTGTACATAGCTG GCAGCAGGGCTGCACTTCCCAGTATATGTATGCAGGCGTTGGTTGTCGTG TAGGTCCAGAAGCAGTGGCTCCTTCCCCGTGTGCTTGGCATGGTTCGTCT GTGGTCGATTTAGGACTGTGGCGCCATAGGGATTAAGGAGAGTGGAATAC AGAAGCGTATAGTAAGGACTGGGAGAAGGGGCAATGATGGTGGGAGGAGT AGAATCGGAGGGAGTATTCATTGTCATACTGTGCTCTATTTATTCCTGCA CCGGCACCGACGGCGTGTTCGCAGAACCACGTGACAACGTTGGTCTCGGG GGACTAGGGGATCGTAATCATCGCCTGTTTTTACGTTGGCGGCGATACCT GACCACCCTGAAGGCGACTGTCGATGTACTTGCTATATTTGGTGGCCTAT GCGGGCAAATTATAGTATCGGGGCCTAAAGCGCTTATGCTCATTCTGAAA CTACGTACCTACTACTGTTGCGATCTACAAGTGTTTCACGTAACGCATGT CGTGTGCCGTGGTTTATGTAGTTAGCGCATACTCCAATTGCAAACAACAT AAAGGAAGGGCGTGTTGGTAGTAGTGGTGGTATTTTATACCGCCATTGGA AAATAACACCCTTAAGTTAGTGCCTAATATCGTGGTTACTTGATGAGGCA CCACCACACTAACTCTTTGCCCTGCTCTGCTCGGCGCCTTCGTACCTCAG GCGGTACGGAGAATTCGATTGTAATGTTTGTTTCAAGTGTTTCACTCTGT GTGTGTTTAGTCGTATTTGTTGCTAGGCTGATAAATTGGCTGTCTGGAAT GCGCAAAGCCCATGGCAAAATCCGGTTAGCCTAGCAACCCAAGGGATGAT GACTGGTAGCAAGTATCACCCTTTGGAAGCGCAACCAGCCCATGGCAAAA TCCGGTTAGCCTAGCAACCCAAGGGATGATGACTGGTAGCAAGTATCACC CTTTGGAATGCGCAAAGCCCATGGCAAAATCCGGTTAGCCTAGCAACCCA AGGGATGATGACTGGTAGCAAGTATCACCCTTTGGAAGCGCAACCAGCCC GACGGGCGAAACCCGAATACTCTATCCCGACGTTGCAGGGGTGCGAGGTC AACGGTCATTGGACTATGGTACGCGTTTTCACCTGTACTCCTCCCCCCCT CACCTACTCATTTTGTATCCGTTCTCGTCCTCTCTAAGACGCGTTGCAAA TGGTTTAACAACTGAGCCCTGTAAAATATGAGTACGCTCCCCCCCCCCGC GCCCACCCCTTCCTCTCTCATCGAGTTTTTAAGTAGATAGCGTAGGTACA ATAGTTCTTAGGGGCAATTTGGGGGCGTAGTAAAGAACGATTGGTCATCC GAAATTGCTGTGGTAGGAGCATAGCTCCGTCCTCCAGAGGACTAGATGGG TGGTGTAACAAGGACGACATGCAAAATATAAATGCCCCCCCCCCTCCCTC TTACTCTTGATTTTACTGGTCCACACGTTTTAGCAGACGGGTAACGGGGG AGTTAATGTGGACATTCGTGACCCTCGCACGGCTCCCGCACCGGGGTCGT CAGGGACGATGCCGGGAGATCCACGCGAGCTAGTTGCAAGCCTATGCCGA CAGTTTTACCACCTGGGCTGGGTGACGGGGACGGGAGGGTCTATCAGCAT CAGGCGAGCGAACGGGTGTTGGTGAATCTGTATGACGTAGGATTGCAGTG GAAGGACGCCCACTAGTTCCCTCGTAACGAGATGCCAGTTTACCGCAGTT GGTCCGTCAAAAATAATTCAATATACTTTGCCGTGGTTGGCGTTTTGACA TTTGTTGTTTTTTATGCGTGTTTGCGTGGCAGGTAAAGTTGCCACACCTA AAACCAGCCCCCAACCGTAAACGTAACCCCTATCCCTTGTTTTAGTCCTT CGCGTGTGAGATCAGCGCCCTGAAGTGTCTAGAATTGGCCCAAACGCTGC GCTGCTTCGCGGCCTTCAAACTGCCTTGCCTACGCGGTTGGTGCAGGGTT TTTTTCGGGCAGGTTAGGCAAGTGAACAAAAATGTAAACAATTGGACGAC TAACAACTGGGGTAGACTTCAATTCAATGCATAACGAATCTGCCAAAACG TTGGATATTTCGTGTGCCTCTGGGTGTACCTTTGTTGGTCTATCTTTCTT CCTCCCGGTGGTATATCTTCTCAGACACGGAAACCGGATCTTCATGACGC CGTCTGGAGTCCAAAAAGAACGCCTGCGCGCCTCCGACTTGTTCGTTCTC GACCAGCAAGGGGGCATTCTTCAGCACCCTTGGGAGCAACGCTCCGGCAC TAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig9456:5221..9424+

>mRNA_H-paniculata_contig9456.17202.1 ID=mRNA_H-paniculata_contig9456.17202.1|Name=mRNA_H-paniculata_contig9456.17202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1500bp|location=Sequence derived from alignment at H-paniculata_contig9456:5221..9424+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCTGGTATCTCGACGCTCCGGAAAACGAGGCGTCCGAGACGCTTCTGAA
GGAGCTGGGGATTGTGCTTTACCAAGTGCATGTGGCCTGGTATCTCGACG
CTCCGGAAAACGAGGCGTCCGAGACGCTTCTGAAGGAGCTGGGGATTGTG
CTTTACCAAGTGCATGTGAAGGGGAGTGAAGACATGAACGTTCAGCTGTG
GAAGTTGGCGCAAGCGAGGCTCCTGCTGCACGCCAAGTCTGGAGCGGATG
GGGCGGACAGGGGCGCCATTCAGATCGGGGATCTGCCATCCACGGCATTT
ATTCATGACAACATGGAAGATCAGAAGGGGAGTGAAGACATGAACGTTCA
GCTGTGGAAGTTGGCGCAAGCGAGGCTCCTGCTGCACGCCAAGTCTGGAG
CGGATGGGGCGGACAGGGGCGCCATTCAGATCGGGGATCTGCCATCCACG
GCATTTATTCATGACAACATGGAAGATCAGGGAGGTGAAGCCCGTTTCGA
CGCTTTGGAAGGCATGTACTGCGTGTGGGGCGGCGAGGCCTTCGTCGACG
TGAGGGACTGGGCGGACTGCTGGGTACGCGTGCGCTTGCGGCAGGGGGAC
GTCGTGCTTATTCCCCCGAACATGTTTCACCGAGCTACACCGAAGAGCCC
AGGCGCCCGGCTGGTGCAAGTACGGATTAAGGGAGGTGAAGCCCGTTTCG
ACGCTTTGGAAGGCATGTACTGCGTGTGGGGCGGCGAGGCCTTCGTCGAC
GTGAGGGACTGGGCGGACTGCTGGGTACGCGTGCGCTTGCGGCAGGGGGA
CGTCGTGCTTATTCCCCCGAACATGTTTCACCGAGCTACACCGAAGAGCC
CAGGCGCCCGGCTGGTGCAAGTACGGATTAAGACGGGTAACGGGGGAGTT
AATGTGGACATTCGTGACCCTCGCACGGCTCCCGCACCGGGGTCGTCAGG
GACGATGCCGGGAGATCCACGCGAGCTAGTTGCAAGCCTATGCCGACAGT
TTTACCACCTGGGCTGGGTGACGGGGACGGGAGGGTCTATCAGCATCAGG
CGAGCGAACGGACGGGTAACGGGGGAGTTAATGTGGACATTCGTGACCCT
CGCACGGCTCCCGCACCGGGGTCGTCAGGGACGATGCCGGGAGATCCACG
CGAGCTAGTTGCAAGCCTATGCCGACAGTTTTACCACCTGGGCTGGGTGA
CGGGGACGGGAGGGTCTATCAGCATCAGGCGAGCGAACGGACACGGAAAC
CGGATCTTCATGACGCCGTCTGGAGTCCAAAAAGAACGCCTGCGCGCCTC
CGACTTGTTCGTTCTCGACCAGCAAGGGGGCATTCTTCAGCACCCTTGGG
AGCAACGCTCCGGCACTAGGACACGGAAACCGGATCTTCATGACGCCGTC
TGGAGTCCAAAAAGAACGCCTGCGCGCCTCCGACTTGTTCGTTCTCGACC
AGCAAGGGGGCATTCTTCAGCACCCTTGGGAGCAACGCTCCGGCACTAGG
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