mRNA_H-paniculata_contig9455.17201.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9455.17201.1
Unique NamemRNA_H-paniculata_contig9455.17201.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig9455.17201.1 vs. uniprot
Match: A0A6H5KZ38_9PHAE (Myosin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ38_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 4.940e-51
Identity = 84/92 (91.30%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:    1 DALAKELYKRLFSWIVDKVNRSIECTSDGLTMGILDIYGFEIFDSNGFEQFCINYVNEKLQQYFIDHTIRAEQDDYETEGVEWEHVDYFNNK 276
            DA+AKE+Y+RLFSWIVDKVNRSIEC ++GLTMGILDIYGFEIFDSN FEQFCINYVNEKLQQYFIDHTIRAEQDDYE EGVEWEHVDYFNNK
Sbjct:  429 DAMAKEVYRRLFSWIVDKVNRSIECATEGLTMGILDIYGFEIFDSNDFEQFCINYVNEKLQQYFIDHTIRAEQDDYEAEGVEWEHVDYFNNK 520
[Close]
BLAST of mRNA_H-paniculata_contig9455.17201.1 vs. uniprot
Match: D8LTJ6_ECTSI (Myosin IA, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTJ6_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 1.530e-50
Identity = 83/92 (90.22%), Postives = 88/92 (95.65%), Query Frame = 1 
Query:    1 DALAKELYKRLFSWIVDKVNRSIECTSDGLTMGILDIYGFEIFDSNGFEQFCINYVNEKLQQYFIDHTIRAEQDDYETEGVEWEHVDYFNNK 276
            DA+AKE+Y+RLF WIVDKVNRSIEC ++GLTMGILDIYGFEIFDSN FEQFCINYVNEKLQQYFIDHTIRAEQDDYE EGVEWEHVDYFNNK
Sbjct:   80 DAMAKEVYRRLFGWIVDKVNRSIECATEGLTMGILDIYGFEIFDSNDFEQFCINYVNEKLQQYFIDHTIRAEQDDYEAEGVEWEHVDYFNNK 171
[Close]
BLAST of mRNA_H-paniculata_contig9455.17201.1 vs. uniprot
Match: A0A8J4UWL5_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4UWL5_9MYCE)

HSP 1 Score: 133 bits (334), Expect = 3.540e-34
Identity = 57/92 (61.96%), Postives = 78/92 (84.78%), Query Frame = 1 
Query:    1 DALAKELYKRLFSWIVDKVNRSIECTSDGLTMGILDIYGFEIFDSNGFEQFCINYVNEKLQQYFIDHTIRAEQDDYETEGVEWEHVDYFNNK 276
            DALAK +Y RLF+W+VD++N+++E  + GL +G+LDIYGFE+FD NGFEQFCINYVNEKLQQ FI+ T++ EQ++Y  EG++WE + YF+NK
Sbjct:  357 DALAKAIYDRLFNWLVDRINQAMENPNKGLLIGVLDIYGFEVFDRNGFEQFCINYVNEKLQQIFIEFTLKMEQEEYVREGIKWEPIQYFDNK 448
[Close]
BLAST of mRNA_H-paniculata_contig9455.17201.1 vs. uniprot
Match: UPI00064504A5 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI00064504A5)

HSP 1 Score: 132 bits (331), Expect = 9.000e-34
Identity = 56/92 (60.87%), Postives = 78/92 (84.78%), Query Frame = 1 
Query:    1 DALAKELYKRLFSWIVDKVNRSIECTSDGLTMGILDIYGFEIFDSNGFEQFCINYVNEKLQQYFIDHTIRAEQDDYETEGVEWEHVDYFNNK 276
            DALAK +Y RLF+W+VD++N+++E  + GL +G+LDIYGFE+FD NGFEQFCINYVNEKLQQ FI+ T++ EQ++Y  EG++WE + +F+NK
Sbjct:  356 DALAKAIYDRLFNWLVDRINKAMENPTTGLMIGVLDIYGFEVFDRNGFEQFCINYVNEKLQQIFIEFTLKMEQEEYVREGIKWEPIQFFDNK 447
[Close]
BLAST of mRNA_H-paniculata_contig9455.17201.1 vs. uniprot
Match: UPI001CFE8317 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFE8317)

HSP 1 Score: 131 bits (329), Expect = 1.200e-33
Identity = 57/92 (61.96%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:    1 DALAKELYKRLFSWIVDKVNRSIECTSDGLTMGILDIYGFEIFDSNGFEQFCINYVNEKLQQYFIDHTIRAEQDDYETEGVEWEHVDYFNNK 276
            DALAK LY R+F W+V ++N +++   + L + +LDIYGFEIFD NGFEQFCINYVNEKLQQ FID T++AEQD+Y+ EG++WE + +FNNK
Sbjct:  343 DALAKALYSRMFDWLVKRINDAMDTKKNQLILAVLDIYGFEIFDKNGFEQFCINYVNEKLQQIFIDLTLKAEQDEYQQEGIKWEPIQFFNNK 434
[Close]
BLAST of mRNA_H-paniculata_contig9455.17201.1 vs. uniprot
Match: R7URK0_CAPTE (Uncharacterized protein (Fragment) n=1 Tax=Capitella teleta TaxID=283909 RepID=R7URK0_CAPTE)

HSP 1 Score: 131 bits (330), Expect = 1.220e-33
Identity = 60/92 (65.22%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:    1 DALAKELYKRLFSWIVDKVNRSIECTSDGLTMGILDIYGFEIFDSNGFEQFCINYVNEKLQQYFIDHTIRAEQDDYETEGVEWEHVDYFNNK 276
            DALAK LY RLF ++V  VN ++E T + +T+GILDIYGFEIF+ NGFEQFCINYVNEKLQQ FI+ T++AEQ++Y  EG++W+ +DYFNNK
Sbjct:  350 DALAKVLYSRLFDYLVSAVNHAMERTQEDVTIGILDIYGFEIFEKNGFEQFCINYVNEKLQQIFIELTLKAEQEEYVQEGIKWKAIDYFNNK 441
[Close]
BLAST of mRNA_H-paniculata_contig9455.17201.1 vs. uniprot
Match: A9UXV2_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UXV2_MONBE)

HSP 1 Score: 131 bits (330), Expect = 1.230e-33
Identity = 59/94 (62.77%), Postives = 76/94 (80.85%), Query Frame = 1 
Query:    1 DALAKELYKRLFSWIVDKVNRSIECTSDG--LTMGILDIYGFEIFDSNGFEQFCINYVNEKLQQYFIDHTIRAEQDDYETEGVEWEHVDYFNNK 276
            DALAK +Y R+FSW+V+++NRS+E   DG    MG+LDIYGFEI  +N FEQFCINY NEKLQQ FI+ T+++EQ++Y  EG+EWE +DYFNNK
Sbjct:  352 DALAKAMYDRMFSWLVERINRSLEYNHDGRQTVMGLLDIYGFEIMKTNSFEQFCINYCNEKLQQLFIELTLKSEQEEYRNEGIEWEKIDYFNNK 445
[Close]
BLAST of mRNA_H-paniculata_contig9455.17201.1 vs. uniprot
Match: A0A6A5BMQ6_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BMQ6_NAEFO)

HSP 1 Score: 131 bits (329), Expect = 1.670e-33
Identity = 57/92 (61.96%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:    1 DALAKELYKRLFSWIVDKVNRSIECTSDGLTMGILDIYGFEIFDSNGFEQFCINYVNEKLQQYFIDHTIRAEQDDYETEGVEWEHVDYFNNK 276
            DALAK LY R+F W+V ++N +++   + L + +LDIYGFEIFD NGFEQFCINYVNEKLQQ FID T++AEQD+Y+ EG++WE + +FNNK
Sbjct:  343 DALAKALYSRMFDWLVKRINDAMDTKKNQLILAVLDIYGFEIFDKNGFEQFCINYVNEKLQQIFIDLTLKAEQDEYQQEGIKWEPIQFFNNK 434
[Close]
BLAST of mRNA_H-paniculata_contig9455.17201.1 vs. uniprot
Match: F4PH79_CAVFA (Myosin IC n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PH79_CAVFA)

HSP 1 Score: 131 bits (329), Expect = 1.670e-33
Identity = 56/92 (60.87%), Postives = 79/92 (85.87%), Query Frame = 1 
Query:    1 DALAKELYKRLFSWIVDKVNRSIECTSDGLTMGILDIYGFEIFDSNGFEQFCINYVNEKLQQYFIDHTIRAEQDDYETEGVEWEHVDYFNNK 276
            DALAK +Y RLF+W+V++VN+++E  + GL +G+LDIYGFE+FD NGFEQFCINYVNEKLQQ FI+ T++ EQ++Y +EG++WE + +F+NK
Sbjct:  356 DALAKAIYDRLFNWLVERVNKAMENNAQGLMIGVLDIYGFEVFDRNGFEQFCINYVNEKLQQIFIEFTLKNEQNEYVSEGIKWEPIPFFDNK 447
[Close]
BLAST of mRNA_H-paniculata_contig9455.17201.1 vs. uniprot
Match: UPI0013045EC1 (unconventional myosin-Ie-like n=1 Tax=Nomia melanderi TaxID=2448451 RepID=UPI0013045EC1)

HSP 1 Score: 131 bits (329), Expect = 1.670e-33
Identity = 59/91 (64.84%), Postives = 77/91 (84.62%), Query Frame = 1 
Query:    1 DALAKELYKRLFSWIVDKVNRSIECTSDGLTMGILDIYGFEIFDSNGFEQFCINYVNEKLQQYFIDHTIRAEQDDYETEGVEWEHVDYFNN 273
            DALAK++Y RLF ++V KVN ++E TSDGL +GILDIYGFEIF+ NGFEQFCIN+VNEKLQQ FI+ T++AEQ++Y  E ++W  ++YFNN
Sbjct:  347 DALAKDIYARLFDYLVKKVNAAMETTSDGLEIGILDIYGFEIFEKNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVAENIKWTPIEYFNN 437
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9455.17201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZ38_9PHAE4.940e-5191.30Myosin motor domain-containing protein n=1 Tax=Ect... [more]
D8LTJ6_ECTSI1.530e-5090.22Myosin IA, putative n=1 Tax=Ectocarpus siliculosus... [more]
A0A8J4UWL5_9MYCE3.540e-3461.96Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
UPI00064504A59.000e-3460.87hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
UPI001CFE83171.200e-3361.96uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
R7URK0_CAPTE1.220e-3365.22Uncharacterized protein (Fragment) n=1 Tax=Capitel... [more]
A9UXV2_MONBE1.230e-3362.77Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A6A5BMQ6_NAEFO1.670e-3361.96Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]
F4PH79_CAVFA1.670e-3360.87Myosin IC n=1 Tax=Cavenderia fasciculata (strain S... [more]
UPI0013045EC11.670e-3364.84unconventional myosin-Ie-like n=1 Tax=Nomia meland... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9455contigH-paniculata_contig9455:6886..9287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.5
Seed ortholog evalue7.2e-43
Seed eggNOG ortholog2880.D8LTJ6
Preferred nameMYO19
KEGG rclassRC00005
KEGG koko:K00698,ko:K10352,ko:K10356,ko:K10357,ko:K17481
KEGG ReactionR02335
KEGG Pathwayko00520,ko04530,map00520,map04530
Hectar predicted targeting categoryother localisation
GOsGO:0000146,GO:0000166,GO:0000278,GO:0000281,GO:0000302,GO:0000910,GO:0001891,GO:0001931,GO:0003674,GO:0003774,GO:0003779,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005826,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006928,GO:0006935,GO:0006950,GO:0006970,GO:0006971,GO:0006979,GO:0006996,GO:0007010,GO:0007015,GO:0007033,GO:0007049,GO:0007154,GO:0008064,GO:0008092,GO:0008104,GO:0008144,GO:0008150,GO:0008360,GO:0009267,GO:0009581,GO:0009582,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010639,GO:0014070,GO:0014074,GO:0015629,GO:0016020,GO:0016043,GO:0016050,GO:0016459,GO:0016460,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022402,GO:0022603,GO:0022604,GO:0022607,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030038,GO:0030048,GO:0030139,GO:0030554,GO:0030587,GO:0030832,GO:0030833,GO:0030837,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030898,GO:0031033,GO:0031034,GO:0031152,GO:0031154,GO:0031254,GO:0031268,GO:0031270,GO:0031333,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032009,GO:0032060,GO:0032153,GO:0032155,GO:0032271,GO:0032272,GO:0032502,GO:0032535,GO:0032553,GO:0032555,GO:0032559,GO:0032796,GO:0032956,GO:0032970,GO:0032982,GO:0032991,GO:0033036,GO:0033043,GO:0033275,GO:0033298,GO:0033554,GO:0034461,GO:0034622,GO:0035639,GO:0036094,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042542,GO:0042594,GO:0042623,GO:0042641,GO:0042802,GO:0042803,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044464,GO:0044764,GO:0044877,GO:0045177,GO:0045179,GO:0045335,GO:0046677,GO:0046683,GO:0046847,GO:0046983,GO:0048519,GO:0048523,GO:0048856,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050982,GO:0051015,GO:0051017,GO:0051128,GO:0051129,GO:0051179,GO:0051301,GO:0051493,GO:0051494,GO:0051591,GO:0051606,GO:0051674,GO:0051703,GO:0051704,GO:0051716,GO:0060327,GO:0060328,GO:0061572,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070252,GO:0070938,GO:0071496,GO:0071840,GO:0071889,GO:0071944,GO:0090066,GO:0090702,GO:0097159,GO:0097204,GO:0097367,GO:0097435,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099568,GO:0099738,GO:0110053,GO:0120025,GO:0120031,GO:0120036,GO:1901265,GO:1901363,GO:1901698,GO:1901700,GO:1902903,GO:1902904,GO:1903047,GO:1990753
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759,KOG0164@2759
EC2.4.1.16
COG Functional cat.Z
CAZyGT2
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003,ko01009,ko03019,ko03029,ko03036,ko04131,ko04147,ko04812
Exons3
Model size277
Cds size276
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9455.17201.1prot_H-paniculata_contig9455.17201.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9455 6886..9287 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931175.0051253-CDS-H-paniculata_contig9455:6885..69391622931175.0051253-CDS-H-paniculata_contig9455:6885..6939Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9455 6886..6939 +
1691481624.30711-CDS-H-paniculata_contig9455:6885..69391691481624.30711-CDS-H-paniculata_contig9455:6885..6939Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9455 6886..6939 +
1622931175.0175898-CDS-H-paniculata_contig9455:8589..87201622931175.0175898-CDS-H-paniculata_contig9455:8589..8720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9455 8590..8720 +
1691481624.3208442-CDS-H-paniculata_contig9455:8589..87201691481624.3208442-CDS-H-paniculata_contig9455:8589..8720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9455 8590..8720 +
1622931175.0322714-CDS-H-paniculata_contig9455:9196..92871622931175.0322714-CDS-H-paniculata_contig9455:9196..9287Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9455 9197..9287 +
1691481624.3311424-CDS-H-paniculata_contig9455:9196..92871691481624.3311424-CDS-H-paniculata_contig9455:9196..9287Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9455 9197..9287 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9455.17201.1

>prot_H-paniculata_contig9455.17201.1 ID=prot_H-paniculata_contig9455.17201.1|Name=mRNA_H-paniculata_contig9455.17201.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
DALAKELYKRLFSWIVDKVNRSIECTSDGLTMGILDIYGFEIFDSNGFEQ
FCINYVNEKLQQYFIDHTIRAEQDDYETEGVEWEHVDYFNNK
back to top

mRNA from alignment at H-paniculata_contig9455:6886..9287+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9455.17201.1 ID=mRNA_H-paniculata_contig9455.17201.1|Name=mRNA_H-paniculata_contig9455.17201.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2402bp|location=Sequence derived from alignment at H-paniculata_contig9455:6886..9287+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGCCCTGGCGAAGGAGTTATACAAGCGTCTGTTTTCGTGGATTGTCGA
TAAGGTTAGCTTTTATGTTGTACAGACTGTAGGGATGTTGTTTTTGGGTA
ATAGGATGAGATAGGTCTAACAACGGCACTTGTGCTTGGCGTGTTGGTCT
TGTGGCGAGTATGTCATCGTTGGTGTGCCGTTTTGTAGCTCGTTTCTATT
TCTGGTGAATCGGATCGAATCGACTGCTGCTATCCGAGTGTCATGTTGTG
TCAATAGGGAAAAAAAGGCAAATGCAGCAGAAAATAAAACATACAAAATT
ATACTCATCAACCTTATAAAAGACTTGTAGTGTATTAGGGTTTTACAATC
ATGACATTATAGAATTTGAAATTCACCGACAGTCAAGCGTACCGTTCGAA
CGCTCTGGATTTCGTCTTTCTCCTCGATATCTCCAAAAAAAGAGTTAGTT
GAGATCATGCAATTTTTCCGAAAACGACCGCAATCCGCCCCAGTACGTGG
AATGGCACTTGGGCGGAGATTAACATCGCAACGAGAGCTCTGATAAAGAA
GCGGATTATTGTGTTGGATTTATTGGGAAAATTGGAGGAAAGTCCACGAC
CATCGCACCTTCTAGAGTATCACGAGTTTCAGACCATCAGTTGGATGCCG
TAGGGAACAGGTGTTACTACGGTCCGTTTCGACATGAGCGACAAAAAAAC
GATTCATCGTTGCTGCGTTTCGTGTACTCAACCGTGATATCGTGAAGATG
GCAACAAGGGATTAACGAGGGATAGGATGAGGAGTGCCTATACTTCACTC
TTTGTGGAGGAATCCAAAGCAACAATCCGTTTCTTCATCGGAGGTCTTGT
TTCGATGTTATCGCCGCAGAAGTCCTATTCCACGTACTAAGGTGGATTTT
GGCCGTTTTCGCAGAATTTCCCAAACCCGAAAAGCACCAAGTATTATGTT
CAGGAGACATGATCTCAACTAATTATTCTTGAAAAAATAGTTTGGAGCTA
TCCAGGAGAATATAAAATTCAGAGCGTTCGAATGGGGGGTATGCTTGGCT
GTCGGTGAATCTCAAATTCTCAAACATGATGACTGGAAAACCCTAATACA
CTACAAGATTTATAAGACTGAGGAGTGTATATACAGTAATGTGCTTCGTG
CGATAGCGCCCCTCTCAGGTGACACTGACTGGTGTATCTATGGACGTCTG
GTAGCTGTATGCCAAACAATTTTTTCCTGCATATATGACCAGTCGAACGG
TTTATCTTTTTTCTGTAGTACCATACTACGGTACAGTACGCTGCGAGCGT
TTGCCTGACTATATGATTGTTTGATTGATCAAATGGTTGGCGACGACAAG
TGATGGGCTTGTTAAACTGAAATTTCATCCCCCTCCCCCCTGTTCTAAAG
CAAAGAGTAAAAATACGTTGGCGTTTTGGAAATTTCATGAAAAATAAAGA
GCGTAGGTTTTGCCAACAATTACAACAATACCCATTCTTATTTGGCATGT
TTGGCGTCTTGTGCCATTGTTTTAGGAACAGTATTGGTTGTACTTGGTCA
TTTTGGAAGTGAAAACCGTTGATTTATTAATGGCGTTTTGGTGCATTGGA
TACTACGTTTTTACCTACACGCGTCTTTTGAATTGAGATGAAGTTGTCAG
GAACGTAAATATCCACCCTTAACCTATATGATATCCTCCGTTGTCGTTCC
CCAGGTGAATCGGTCGATAGAGTGTACTTCCGACGGTCTGACGATGGGCA
TCTTGGATATCTACGGCTTCGAGATCTTCGACAGCAACGGATTCGAGCAG
TTCTGTATCAACTACGTGAACGAAAAGCTGCAGCAGTAAGTCTAAATTAA
GAGTATATTACGTCTTTCCACATCGCTACCTACGGTAAACGCAAATCATA
TAGCAACGTTTAAGGTGTGATTTTATCCTGTTTTTTTTGTCTTGTTTCCC
TCTTTCAAGGGTTTACAATGCTTGGATCTTGCCGAGCCAAAAAGCGAGGC
TCGTGGGGTGCAACCAGGGTGGTATACGGGGTGTGTAAAGGTTTTAACGT
CGAGTATTTGGTCTTATAACGGGAATTTGGAAGAACGTGAGACGCTGACA
CTCGTAGCGGCTGGCTTCAATTGCATGATATAATAGTTACAGGCTTCAAG
CTTTTGACGTATGTGCCGGCACGGTGTTGCATAGGTTACGGTGCCCTCCA
CCTATCTATTCTGTGTCACCACTCCATTTTTCTTGATGAAACGTGCGTTA
CTTCTGTTTCTTTAACTGCTGATTCGATTCCAAACGCGGCGCATCTAATG
CCGGTTCGCAGGTACTTCATCGACCATACCATCCGTGCCGAGCAAGACGA
CTACGAGACGGAAGGAGTCGAATGGGAACACGTCGACTACTTCAACAACA
AG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig9455:6886..9287+

>mRNA_H-paniculata_contig9455.17201.1 ID=mRNA_H-paniculata_contig9455.17201.1|Name=mRNA_H-paniculata_contig9455.17201.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig9455:6886..9287+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGCCCTGGCGAAGGAGTTATACAAGCGTCTGTTTTCGTGGATTGTCGA
TAAGGATGCCCTGGCGAAGGAGTTATACAAGCGTCTGTTTTCGTGGATTG
TCGATAAGGTGAATCGGTCGATAGAGTGTACTTCCGACGGTCTGACGATG
GGCATCTTGGATATCTACGGCTTCGAGATCTTCGACAGCAACGGATTCGA
GCAGTTCTGTATCAACTACGTGAACGAAAAGCTGCAGCAGTGAATCGGTC
GATAGAGTGTACTTCCGACGGTCTGACGATGGGCATCTTGGATATCTACG
GCTTCGAGATCTTCGACAGCAACGGATTCGAGCAGTTCTGTATCAACTAC
GTGAACGAAAAGCTGCAGCAGTACTTCATCGACCATACCATCCGTGCCGA
GCAAGACGACTACGAGACGGAAGGAGTCGAATGGGAACACGTCGACTACT
TCAACAACAAGGTACTTCATCGACCATACCATCCGTGCCGAGCAAGACGA
CTACGAGACGGAAGGAGTCGAATGGGAACACGTCGACTACTTCAACAACA
AG
back to top