mRNA_H-paniculata_contig9442.17195.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9442.17195.1
Unique NamemRNA_H-paniculata_contig9442.17195.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig9442.17195.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 347 bits (890), Expect = 3.580e-116
Identity = 172/219 (78.54%), Postives = 192/219 (87.67%), Query Frame = 2 
Query:   53 MKFAVISIACATGVQAFVNPSAFQSAALTQSARSSSSMKMTAFESEIGVQPPIGFWDPLGLVTDADQERFDRLRYVEVKHGRIAMLAVAGHLTQQNVRLPGMLSNSAGISFADMPNGLAALGKIPPVGLAQILAFIGFLELVVMKNVEDSFPGDMTRGGNPFGAVWDAMSEDTQVSKRGIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 709
            MK A +++ACA    AFV PSAF  AA+   A+SSS+MKM+ FESEIG QPP+GFWDPLGL+ DADQERF+RLRYVEVKHGRIAMLA+AGHLTQQNVRLPGMLSNSA +SFADMPNG+AAL KIPP GLAQI AF+GFLEL VMKNVE SFPGD T GGNPF + WDAMSE+TQ SKR IELNNGRAAQMGILA+MVHEEL+N+PYIINDL+GASYTFN
Sbjct:    1 MKSACMALACAASANAFVAPSAFNGAAVATPAKSSSAMKMS-FESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTFN 218
[Close]
BLAST of mRNA_H-paniculata_contig9442.17195.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 343 bits (879), Expect = 1.610e-114
Identity = 173/219 (79.00%), Postives = 191/219 (87.21%), Query Frame = 2 
Query:   53 MKFAVISIACATGVQAFVNPSAFQSAALTQSARSSSSMKMTAFESEIGVQPPIGFWDPLGLVTDADQERFDRLRYVEVKHGRIAMLAVAGHLTQQNVRLPGMLSNSAGISFADMPNGLAALGKIPPVGLAQILAFIGFLELVVMKNVEDSFPGDMTRGGNPFGAVWDAMSEDTQVSKRGIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 709
            MK AV+++ACA     F  PSAF  AALT SA++ S+MKM+ FESEIG Q P+GFWDPLGL+ DADQERF+RLRYVEVKHGRIAMLA+AGHLTQQN RLPGMLSNSA +SFADMPNG+AAL KIPP GLAQI AFIGFLEL VMKNVE SFPGD T GGNPFGA WDAMSE+TQ SKR IELNNGRAAQMGILA+MVHEEL+N+PY+INDLVGASYTFN
Sbjct:    1 MKSAVMAVACAAA-PGFRGPSAFNGAALTTSAKACSAMKMS-FESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTFN 217
[Close]
BLAST of mRNA_H-paniculata_contig9442.17195.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 329 bits (843), Expect = 5.240e-109
Identity = 161/199 (80.90%), Postives = 179/199 (89.95%), Query Frame = 2 
Query:  113 SAFQSAALTQSARSSSSMKMTAFESEIGVQPPIGFWDPLGLVTDADQERFDRLRYVEVKHGRIAMLAVAGHLTQQNVRLPGMLSNSAGISFADMPNGLAALGKIPPVGLAQILAFIGFLELVVMKNVEDSFPGDMTRGGNPFGAVWDAMSEDTQVSKRGIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 709
            SAF  AA+  SA+SSS+MKM+ FESEIG QPP+GFWDPLGL+ DADQERF+RLRYVEVKHGRIAMLA+AGHLTQQNVRLPGMLSNSA +SFADMPNG+AAL KIPP GLAQI AF+GFLEL VMKNVE SFPGD T GGNPF + WDAMSE+TQ SKR IELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA YTFN
Sbjct:   24 SAFNGAAVATSAKSSSAMKMS-FESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 221
[Close]
BLAST of mRNA_H-paniculata_contig9442.17195.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 322 bits (824), Expect = 2.790e-106
Identity = 164/214 (76.64%), Postives = 181/214 (84.58%), Query Frame = 2 
Query:   68 ISIACATGVQAFVNPSAFQSAALTQSARSSSSMKMTAFESEIGVQPPIGFWDPLGLVTDADQERFDRLRYVEVKHGRIAMLAVAGHLTQQNVRLPGMLSNSAGISFADMPNGLAALGKIPPVGLAQILAFIGFLELVVMKNVEDSFPGDMTRGGNPFGAVWDAMSEDTQVSKRGIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 709
            I+ A A G++    PSAF  AAL+  A+SSS+MKM+ FESEIG Q P+GFWDPLGL+ DADQERF+RLRYVEVKHGRIAMLA+AGHLTQQN RLPGMLSNSA +SFADMPNG+AAL KIPP GLAQI  FIGFLEL VMKNVE SFPGD   GGNPF + WD+MS +TQ SKR IELNNGRAAQMGIL MMVHEELSNQPYI NDL+GASYTFN
Sbjct:    2 IACAAAPGLR---GPSAFNGAALSTPAKSSSAMKMS-FESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTFN 211
[Close]
BLAST of mRNA_H-paniculata_contig9442.17195.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI)

HSP 1 Score: 326 bits (836), Expect = 1.160e-105
Identity = 160/198 (80.81%), Postives = 177/198 (89.39%), Query Frame = 2 
Query:  116 AFQSAALTQSARSSSSMKMTAFESEIGVQPPIGFWDPLGLVTDADQERFDRLRYVEVKHGRIAMLAVAGHLTQQNVRLPGMLSNSAGISFADMPNGLAALGKIPPVGLAQILAFIGFLELVVMKNVEDSFPGDMTRGGNPFGAVWDAMSEDTQVSKRGIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 709
            AF  AA+   A+SSS+MKM+ FESEIG QPP+GFWDPLGL+ DADQERF+RLRYVEVKHGRIAMLA+AGHLTQQN RLPGMLSNSA +SFADMPNG+AAL KIPP GLAQI AFIGFLEL VMKNVE SFPGD T GGNPFG+ WDAMSE+TQ SKR IELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA YTFN
Sbjct:  181 AFNGAAVATPAKSSSAMKMS-FESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 377
[Close]
BLAST of mRNA_H-paniculata_contig9442.17195.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 319 bits (818), Expect = 2.680e-105
Identity = 164/220 (74.55%), Postives = 187/220 (85.00%), Query Frame = 2 
Query:   53 MKFAVISIACAT-GVQAFVNPSAFQSAALTQSARSSSSMKMTAFESEIGVQPPIGFWDPLGLVTDADQERFDRLRYVEVKHGRIAMLAVAGHLTQQNVRLPGMLSNSAGISFADMPNGLAALGKIPPVGLAQILAFIGFLELVVMKNVEDSFPGDMTRGGNPFGAVWDAMSEDTQVSKRGIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 709
            MK A++++A A  G++    PSAF  AALT SA+SSS+MKM+ FESEIG Q P+GFWDPLGL+ DADQ+ F+RLRYVEVK GRIAMLA+AGHLTQQN RLPGMLSNSA +SFADMPNG+AAL KIPP GLAQI  FIGFLEL VMKNVE SFPGD T GGNPF + WDAMS +TQ SKR IELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GASY FN
Sbjct:    1 MKSAIMAVASAAPGLR---GPSAFNGAALTTSAKSSSAMKMS-FESEIGAQAPLGFWDPLGLLEDADQDAFERLRYVEVKLGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 216
[Close]
BLAST of mRNA_H-paniculata_contig9442.17195.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE)

HSP 1 Score: 314 bits (805), Expect = 7.370e-104
Identity = 151/182 (82.97%), Postives = 165/182 (90.66%), Query Frame = 2 
Query:  164 MKMTAFESEIGVQPPIGFWDPLGLVTDADQERFDRLRYVEVKHGRIAMLAVAGHLTQQNVRLPGMLSNSAGISFADMPNGLAALGKIPPVGLAQILAFIGFLELVVMKNVEDSFPGDMTRGGNPFGAVWDAMSEDTQVSKRGIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 709
            MKM+ FESEIG QPP+GFWDPLGL+ DADQERF+RLRYVEVKHGRIAMLA+AGHLTQQN RLPGMLSNSA +SFADMPNG+AAL KIPP GLAQI AFIGFLEL VMKNVE SFPGD T GGNPFG+ WDAMSE+TQ SKR IELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA Y FN
Sbjct:    1 MKMS-FESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNFN 181
[Close]
BLAST of mRNA_H-paniculata_contig9442.17195.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY)

HSP 1 Score: 305 bits (781), Expect = 3.270e-100
Identity = 148/182 (81.32%), Postives = 162/182 (89.01%), Query Frame = 2 
Query:  164 MKMTAFESEIGVQPPIGFWDPLGLVTDADQERFDRLRYVEVKHGRIAMLAVAGHLTQQNVRLPGMLSNSAGISFADMPNGLAALGKIPPVGLAQILAFIGFLELVVMKNVEDSFPGDMTRGGNPFGAVWDAMSEDTQVSKRGIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 709
            MKM+ FE EIG Q P+GFWDPLGL+ DADQERF+RLRYVEVKHGRIAMLA+AGHLTQQN RLPGMLSNSA +SFADMPNG+AAL KIPP GLAQI  FIGFLEL VMKNVE SFPGD T GGNPF + WDAMSE+TQ SKR IELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GASY FN
Sbjct:    2 MKMS-FELEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 182
[Close]
BLAST of mRNA_H-paniculata_contig9442.17195.1 vs. uniprot
Match: FCPE_MACPY (Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic n=3 Tax=Phaeophyceae TaxID=2870 RepID=FCPE_MACPY)

HSP 1 Score: 292 bits (748), Expect = 9.000e-95
Identity = 147/197 (74.62%), Postives = 162/197 (82.23%), Query Frame = 2 
Query:  119 FQSAALTQSARSSSSMKMTAFESEIGVQPPIGFWDPLGLVTDADQERFDRLRYVEVKHGRIAMLAVAGHLTQQNVRLPGMLSNSAGISFADMPNGLAALGKIPPVGLAQILAFIGFLELVVMKNVEDSFPGDMTRGGNPFGAVWDAMSEDTQVSKRGIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 709
            F  AAL  SA+SSS+MKM+ FESEIG QPPIGFWDPLGLV DADQERFDRLRYVE+KHGRIAMLAV GH+TQQN RLPGMLS    ++FAD PNG+AA  KIPP+G  QI+  IG  EL V+K VE SFPGD T GGN F + WD MSE+TQ SKR IELNNGRAAQMGILAMMVHE+LSNQPYIINDL GA+Y FN
Sbjct:   17 FNGAALATSAKSSSAMKMS-FESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVVGHITQQNTRLPGMLSFKENLAFADSPNGVAAFSKIPPLGTLQIILAIGCHELFVVKQVEGSFPGDCTTGGNIFQSAWDNMSEETQASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAYQFN 212
[Close]
BLAST of mRNA_H-paniculata_contig9442.17195.1 vs. uniprot
Match: A0A6H5KBS3_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS3_9PHAE)

HSP 1 Score: 280 bits (716), Expect = 4.990e-90
Identity = 143/207 (69.08%), Postives = 161/207 (77.78%), Query Frame = 2 
Query:  164 MKMTAFESEIGVQPPIGFWDPLGLVTDA-------------------------DQERFDRLRYVEVKHGRIAMLAVAGHLTQQNVRLPGMLSNSAGISFADMPNGLAALGKIPPVGLAQILAFIGFLELVVMKNVEDSFPGDMTRGGNPFGAVWDAMSEDTQVSKRGIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 709
            MKM+ FESE+G QPP+GF+DPLGL+ D                          DQERFDRLRYVEVKHGRI+MLAVAGHL  QN R PG LS  A ++FADMPNG+AA+ KIPP+GLAQI+AFIGFLEL VMKNVE SFPGDMT GGNPF A WDAMSE+T++SKR IELNNGRAAQMGILAMM+HEE+SNQPYIINDL+ A YTFN
Sbjct:    1 MKMS-FESELGAQPPLGFFDPLGLLIDQVVPQLPPSCQSSLLVICADGLEPWEDQERFDRLRYVEVKHGRISMLAVAGHLVAQNYRFPGYLSYDAKLTFADMPNGVAAISKIPPLGLAQIVAFIGFLELNVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 206
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9442.17195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCX6_9PHAE3.580e-11678.54LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepI... [more]
FCPB_MACPY1.610e-11479.00Fucoxanthin-chlorophyll a-c binding protein B, chl... [more]
A0A6H5JHT6_9PHAE5.240e-10980.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
FCPF_MACPY2.790e-10676.64Fucoxanthin-chlorophyll a-c binding protein F, chl... [more]
D8LNK6_ECTSI1.160e-10580.81Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
FCPC_MACPY2.680e-10574.55Fucoxanthin-chlorophyll a-c binding protein C, chl... [more]
A0A6H5JDS8_9PHAE7.370e-10482.97LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
FCPD_MACPY3.270e-10081.32Fucoxanthin-chlorophyll a-c binding protein D, chl... [more]
FCPE_MACPY9.000e-9574.62Fucoxanthin-chlorophyll a-c binding protein E, chl... [more]
A0A6H5KBS3_9PHAE4.990e-9069.08LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9442contigH-paniculata_contig9442:843..6309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score353.6
Seed ortholog evalue6.7e-95
Seed eggNOG ortholog2880.D7G1R7
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2CDPH@1,2S3EU@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1272
Cds size660
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9442.17195.1prot_H-paniculata_contig9442.17195.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9442 1403..6257 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931174.372636-UTR-H-paniculata_contig9442:842..14021622931174.372636-UTR-H-paniculata_contig9442:842..1402Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9442 843..1402 -
1691481623.9447675-UTR-H-paniculata_contig9442:842..14021691481623.9447675-UTR-H-paniculata_contig9442:842..1402Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9442 843..1402 -
1622931174.4349577-UTR-H-paniculata_contig9442:6257..63091622931174.4349577-UTR-H-paniculata_contig9442:6257..6309Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9442 6258..6309 -
1691481623.9792018-UTR-H-paniculata_contig9442:6257..63091691481623.9792018-UTR-H-paniculata_contig9442:6257..6309Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9442 6258..6309 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931174.3863194-CDS-H-paniculata_contig9442:1402..20001622931174.3863194-CDS-H-paniculata_contig9442:1402..2000Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9442 1403..2000 -
1691481623.956595-CDS-H-paniculata_contig9442:1402..20001691481623.956595-CDS-H-paniculata_contig9442:1402..2000Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9442 1403..2000 -
1622931174.4201808-CDS-H-paniculata_contig9442:6195..62571622931174.4201808-CDS-H-paniculata_contig9442:6195..6257Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9442 6196..6257 -
1691481623.9688709-CDS-H-paniculata_contig9442:6195..62571691481623.9688709-CDS-H-paniculata_contig9442:6195..6257Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9442 6196..6257 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9442.17195.1

>prot_H-paniculata_contig9442.17195.1 ID=prot_H-paniculata_contig9442.17195.1|Name=mRNA_H-paniculata_contig9442.17195.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=220bp
MKFAVISIACATGVQAFVNPSAFQSAALTQSARSSSSMKMTAFESEIGVQ
PPIGFWDPLGLVTDADQERFDRLRYVEVKHGRIAMLAVAGHLTQQNVRLP
GMLSNSAGISFADMPNGLAALGKIPPVGLAQILAFIGFLELVVMKNVEDS
FPGDMTRGGNPFGAVWDAMSEDTQVSKRGIELNNGRAAQMGILAMMVHEE
LSNQPYIINDLVGASYTFN*
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mRNA from alignment at H-paniculata_contig9442:843..6309-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9442.17195.1 ID=mRNA_H-paniculata_contig9442.17195.1|Name=mRNA_H-paniculata_contig9442.17195.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5467bp|location=Sequence derived from alignment at H-paniculata_contig9442:843..6309- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTATTTTTTCATACCACAAGAGCAACTTGCTGCATACCACAGACCCTGCA
AAATGAAGTTCGCTGTGATATCAATCGCTTGCGCCACTGGTGTCCAGGCC
TTCGTGAACCCTAGGTAAGCTTATGTGATTTATACAAGACTGTGTCTCTG
TTGTGCCTAGGAGTGCACAACAGACGTTTGCACAACAGACATCACACATG
TTATATTCGTACTACACAGATTTGTAGAGAGCATCGTTTGTCTCCAGGGC
AGCGCCTCCGCTCATTCATGGCGCAGTGTTGAACATGGAGCCTTGCCCTA
CTTAGCGTATTGCTCTGAGTGATTGTTTTCGAGTGTGCCCTTCAGCCACT
ACCTATATTTGCATGTGTGGGTGCATACAGGTACTCGGCTGTTGAATTTT
GTTCGTCATATGTAGATCAAGACGACTAGCGCATCACACGATAGAGGATA
GAGTAACCGCTGATTCTACCGTTCGTGGTTAGACCGCATTCACTGGCTCT
CTTCTATTGTGATGATTGCGCCGTTTTCTCTAAAAAAATAGTATTACAAG
CCCTCGAAACATGGCAGATGAGGAGAGGGGACGGGAGGGGACGAGAGGGG
ATGCGTGTATACTTCCCATAGTAGAGTGCCTTTGACGTACCCAACCTGAG
CTTATACATTCTACGTCCACAATCCTTGCCTGTCATGATTCCGCAAGTAG
GCCATCAAATGTGCATTGGCGGTAATACACATAAATCATGATACAAACTA
CACCATGGCTATCAACCAAAGAGGGGTGTTACCCAGCTGGCGCCATAACG
TACCGGTTATTACCGATTATGGGCAAAAATATAACTTACCGTGATTACCG
CCACATAACGATCCTTTGTGGTTAGTCCATACCCCCTACATTGTCACAAT
TCATTAGCGATTTTCAAATTATAGCACCCCATGATACATCCCGTCCTTGA
TATTAACCTGGGCATGAATACCACCGCTGTTAACCTTTTAAGCGCCTGAG
TATACTTGAGAACAAAAAAGGCACCAACAGCAAATGCCGAGTGCTGCAGT
CGGTATGGGCGAAACCGTGTCTGAGGCTTGTTTTTGCATGAAATATGTTG
TTGAGCTGTCTATCTGAACAGCGGCGATTCACGATCCCCGGTGTCATCTC
ATAGGCATAGTATTTATTCTTTTTTTTATATGGGGAACCCACGCTGAAAG
AGTTAACGGGCGTCACAATCGCGCCTTCCCCCATTCGGTCCCCTTTAAAA
AGGTACCCGAAAAAAGAACGCTACTACAGAGTGACATAATATTTGATCCG
ACGCCATATCTCGCGATCTACAACGAGAAAAGTGATGCGAACTTTTGCGT
AGGCCTTGTCTGTGCAAGGACTTGAACTTTTGTTCTGAGGCCATCGGTCA
AGAAAAGGAATTCGGCGAAAAACTCGAGAAAAACCGGGAAAAATGGCATT
AAGAGACCTACAATTCAAATACTAGAAAATATATGATAATATGGATTTTC
ACCCATAACTCGAGATGAGGAACGACTTTCTTTTTGCCCCAACGTGACCA
CGCCGGCATCGTGACCGAGATCATGTGCGAAAACATTCGGTTTAGAAATA
ATGTAGTTCTAGCGAGTTATCGTTGACGAAGATCTGCAGATCTGCGTGGA
GTTTGACCAAGTTTATCCGGTACACTGGTATGGTACGCTGTTTTTTTGCC
CATTTCTTGACTATTTCTTTCCGTTTTTCATCATTCTTTTTTACTGTATT
CGGACAAGCAATACAGATGAAATATTTTACATCAGCTACCGTTTCAACCG
GGGAATACCCACATTAACAAGATTGGCAAGAAAAAATGCAAAATGTTGAG
ATATTGTCGGGATATTGTGGTAAGGGGTAACAGAGATAGCCCCAAAATGA
AGACCCCCAATTGCACTTGGGACGGCTGCATGCAACCCCCGCCGATATTT
TAGTTTGTTGAATCTTTGAATTGTTACCAAACACACCGACGTGCCCAAAC
AGACGGTGCCACGTAAAAATAGTGGCACACAGTGACACACAGTTTAGCTA
CTAGCCACCTACCGTACTGTAAGAAAAACACCAACAAGTTCTTGCCCCTC
TACTGTTGCTGAGAAAACTCGTGTACCCAGGTACTGTCAAATTCGCTCTA
CAGAAATCTAATCCTAATTGCACTTGCTCATCAATCTCGCCCTCACACTT
GTCTCCCGCCTAAAGGTCGGCCTCGGACTCGTTGAGCTCATCGCCTAACC
CTCCCTCCTGCTCCTCATTCCAATCCTGCCGCAAACACTACCTTTATGTG
TGATGTGGAAAAAATTGATTTAGCCGCTCTAGGTTTTTAAATGTGTTCCT
CCGCCTTGGATTCGAGGTTACCCCTGTTGACTGACCCCCAGTTCTTCACC
GCCACAGCAGATATGCCAAAAGGCTAACATGACCACATGCGCTATGTCGA
GAGGAACACGCCTGCGGTGGTTTCACCTTCGTAGTTGTATTCTGTGGCCG
TGGAGTGTATTTAAAGTGACGTGCTCTATTTTTGGGCGACATGCCCAAAT
TCAAATTCCTCCATTTTATTATTCTTTTTGCGTCCCATTGGCATCATCTC
GAGCTTTCTGTAAATATATGTAACAGCCGATTGCCGTACTTGAGAATCAG
TTTAAGTCGAGAATCAGCGTCGGCCCGTTTTAGTATGGAAATTGTCGAAT
CAATTAATCTTGTGGAATTCTACTGGCGCTTCGTTTTTGCATATTTTGAA
ACTTTTCGAAGCTATTGCCCGACTTGCGTGCGGTCTATAACGACTGTTGC
GAGGGCGATAATTATGAGTCCGACACACCACTACTATATGATGAATATTA
GCCGTCTTGCTTGCGTTCGATGGATAGGGCTGTGCTTGTTTCCTTGAGTT
ACTTGCTTCTTGTTTTCTGTGATTTAAAAAAAAATCATATATAATGTTGT
AGATGATGAAGAGGAGACGATGTGAATGTTGGCCTTCTGTGTAACAGCAG
GCCTGACCAATGTGCTATTGACAGACCGAGTGATGAGTAACGACAGGAAT
GGACTGTGGCTGAGGGTGGCAGAGGAGTGGGGATGGAAGGGGGGGTTGAA
AGTGCCCTTTGAGGTTAATGTCCACGTCGTCCATGCGTTGAATTCAAAAT
GCTCCAAGATGCAGTTAAAGTATACTCTTTGTCATCATGTGAGACACAAG
ATCTGACATCCGTTTGAAATATTTATTTTCCTTGTCGAAGAGGTCAATTG
TTTTTCTTTCCCAACTGTTTCAGAAGGTTAGAAGCGTTCGATGAAATTGA
TTCTTTTGTAAATAACGGCTATACGAACGGTTCTATAATTTACAAATAAG
CCGATTATTTGTCCATAAGGAGCAAAAGCGAGTGTGGTTTGCAGGAGCGG
GACAGATAATTGATGTGGCCTTTTTCCTGCCCCCATCCACTTCCCTCCAC
TCCATGTCTCCGCTCATCTCTCCGGGAGTAGTATGACAATAGCAGCAGCA
GCCCGCGCTTCGTTCACATCCAACACCGTACCAAACGATGAATCATCCGA
TGTGCCATCTTCATCAGGCAACACATCTCAAGTACACGCCCTTTGCGATG
ACCCCGCCATGGCTGCTCCTGCTGCAAGAAAACGACGTCGCCACGTCAGT
CCACCCGCTCCTCTCGAAGATATTACGAATTGCTGCGGTCTCGAGTGCCA
CAAAATGTTTCATGATTCCCAGGGAACGTTTGATGCGCAATATTCATCAT
AAAGTAGTGGTGTGTCGGGCTCATCATCATCGCCCTCGCAACAGTCGTTA
TAGACCACACGCAAGTTGGGCAATAGCTTTGAAAAGTTTCAAAATATGCG
AAAACGAAGCGCCAGTAGAATTCCATAACATTACTGATTCGACAATTTCC
ACACTAGAACCGGCCGACGCTGATTCTCGACTATAAACTGATTCTCAAAT
ACGACAATCGGCTGTTATGTATAGGTGGTAAGATAGTTTATTGGGTGGCT
ACTCCGCGAAAACTGGACCACTAAAAGTGTAAAATTCGGGGAGAAAAGTG
CATTCAACATTTGAGAAACATCTCCATAGCGTACTAAATACTATATCACT
CTGTAGTAGTCTGAGACCTTCACTATCTTGAGAGCTTCACTATCCTGTAC
GACCCATGTAGCTCAAGCTGCAGCTCTTGATCAACTGATCACCTGCACTT
GAAGTTGTCTCTTTCCTTTTCAGCTTGCTCCCTATTGTACCGTTTCCTCA
CTTTCTACCCCTCTCCCGCTTCGGTCTCCACTTTTCTATCCTTGCCCCCC
GAATTGCAGTGCATTCCAAAGTGCCGCCCTGACCCAGTCTGCCAGGTCCT
CGTCGTCGATGAAGATGACGGCCTTCGAATCCGAGATCGGTGTGCAACCT
CCGATCGGCTTCTGGGATCCACTCGGCTTGGTGACAGACGCCGACCAGGA
GAGATTCGACCGCCTCCGGTACGTGGAAGTGAAGCACGGGCGCATTGCTA
TGCTCGCCGTCGCGGGTCACCTAACCCAGCAGAACGTCCGCCTGCCTGGT
ATGCTCTCAAACTCGGCGGGTATCTCGTTCGCCGACATGCCTAATGGTTT
GGCGGCTCTGGGCAAGATTCCCCCGGTGGGGCTTGCCCAGATCCTCGCGT
TTATCGGTTTCCTCGAGTTGGTTGTGATGAAAAACGTGGAAGATTCCTTC
CCCGGAGATATGACGCGAGGTGGCAATCCGTTCGGAGCTGTGTGGGACGC
GATGTCCGAGGACACTCAGGTGTCGAAGCGCGGGATCGAGTTGAACAATG
GGCGAGCGGCGCAGATGGGCATCCTGGCGATGATGGTCCACGAGGAGCTA
TCGAACCAGCCCTACATCATCAATGACCTGGTCGGCGCGTCGTACACCTT
CAACTAGAGCGTACGCCATTGGCGACAGCGGCTTTATACTACATAAAAAA
GTAACATTATACGTTGTCACGTTGTATACCTTGTTTTTCTAGTAGAAATT
CGATTCAGATCGTTGATATCACGTTCTCGAAGTTGTGTTTTTGGCTGTGG
TTAATTGTCTTCCTTCCGACAACAGCCGAGGAACTCAAGGATTAGTAGAC
TTGAATGTTTTTTGTCCCATTGTGGAAAATCGACAACTGTTGATTTTTAT
GTCTGGGATTACTGACAGCGTAGTAGAATCGTTGTAATTGTGCGTATAAT
TAGGCCACCGAATGGCTATCATTATAAGAAAACTGCCGGTAGAAAACGAA
AATAATAGTTTTAACAGTGCGCTAGAGTGATGCCCTTTTGATTGAAACGA
GGAATTTAGCACAAGTTCTTGCCTTCCTTTTTTGATAGTATTCATTTCGG
GGAGGCAATCGTAGAATCTGTTCTCCCCGGGACTGTTTAAGGGGAGGAAG
CGTTCACCATCAACATGATATTGGTGAGATGGAGAACATTTGTTTTTGAG
AACAAGCCTGAAATCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig9442:843..6309-

>mRNA_H-paniculata_contig9442.17195.1 ID=mRNA_H-paniculata_contig9442.17195.1|Name=mRNA_H-paniculata_contig9442.17195.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1320bp|location=Sequence derived from alignment at H-paniculata_contig9442:843..6309- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGTTCGCTGTGATATCAATCGCTTGCGCCACTGGTGTCCAGGCCTT
CGTGAACCCTAGATGAAGTTCGCTGTGATATCAATCGCTTGCGCCACTGG
TGTCCAGGCCTTCGTGAACCCTAGTGCATTCCAAAGTGCCGCCCTGACCC
AGTCTGCCAGGTCCTCGTCGTCGATGAAGATGACGGCCTTCGAATCCGAG
ATCGGTGTGCAACCTCCGATCGGCTTCTGGGATCCACTCGGCTTGGTGAC
AGACGCCGACCAGGAGAGATTCGACCGCCTCCGGTACGTGGAAGTGAAGC
ACGGGCGCATTGCTATGCTCGCCGTCGCGGGTCACCTAACCCAGCAGAAC
GTCCGCCTGCCTGGTATGCTCTCAAACTCGGCGGGTATCTCGTTCGCCGA
CATGCCTAATGGTTTGGCGGCTCTGGGCAAGATTCCCCCGGTGGGGCTTG
CCCAGATCCTCGCGTTTATCGGTTTCCTCGAGTTGGTTGTGATGAAAAAC
GTGGAAGATTCCTTCCCCGGAGATATGACGCGAGGTGGCAATCCGTTCGG
AGCTGTGTGGGACGCGATGTCCGAGGACACTCAGGTGTCGAAGCGCGGGA
TCGAGTTGAACAATGGGCGAGCGGCGCAGATGGGCATCCTGGCGATGATG
GTCCACGAGGAGCTATCGAACCAGCCCTACATCATCAATGACCTGGTCGG
CGCGTCGTACACCTTCAACTAGTGCATTCCAAAGTGCCGCCCTGACCCAG
TCTGCCAGGTCCTCGTCGTCGATGAAGATGACGGCCTTCGAATCCGAGAT
CGGTGTGCAACCTCCGATCGGCTTCTGGGATCCACTCGGCTTGGTGACAG
ACGCCGACCAGGAGAGATTCGACCGCCTCCGGTACGTGGAAGTGAAGCAC
GGGCGCATTGCTATGCTCGCCGTCGCGGGTCACCTAACCCAGCAGAACGT
CCGCCTGCCTGGTATGCTCTCAAACTCGGCGGGTATCTCGTTCGCCGACA
TGCCTAATGGTTTGGCGGCTCTGGGCAAGATTCCCCCGGTGGGGCTTGCC
CAGATCCTCGCGTTTATCGGTTTCCTCGAGTTGGTTGTGATGAAAAACGT
GGAAGATTCCTTCCCCGGAGATATGACGCGAGGTGGCAATCCGTTCGGAG
CTGTGTGGGACGCGATGTCCGAGGACACTCAGGTGTCGAAGCGCGGGATC
GAGTTGAACAATGGGCGAGCGGCGCAGATGGGCATCCTGGCGATGATGGT
CCACGAGGAGCTATCGAACCAGCCCTACATCATCAATGACCTGGTCGGCG
CGTCGTACACCTTCAACTAG
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