mRNA_H-paniculata_contig9441.17194.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9441.17194.1
Unique NamemRNA_H-paniculata_contig9441.17194.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9441.17194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9441contigH-paniculata_contig9441:3886..5826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size326
Cds size222
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9441.17194.1prot_H-paniculata_contig9441.17194.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9441 3886..5724 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931174.286031-CDS-H-paniculata_contig9441:3885..39511622931174.286031-CDS-H-paniculata_contig9441:3885..3951Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9441 3886..3951 -
1691481623.9089484-CDS-H-paniculata_contig9441:3885..39511691481623.9089484-CDS-H-paniculata_contig9441:3885..3951Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9441 3886..3951 -
1622931174.302345-CDS-H-paniculata_contig9441:5568..57241622931174.302345-CDS-H-paniculata_contig9441:5568..5724Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9441 5569..5724 -
1691481623.9237459-CDS-H-paniculata_contig9441:5568..57241691481623.9237459-CDS-H-paniculata_contig9441:5568..5724Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9441 5569..5724 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931174.318446-UTR-H-paniculata_contig9441:5724..58261622931174.318446-UTR-H-paniculata_contig9441:5724..5826Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9441 5725..5826 -
1691481623.9343698-UTR-H-paniculata_contig9441:5724..58261691481623.9343698-UTR-H-paniculata_contig9441:5724..5826Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9441 5725..5826 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9441.17194.1

>prot_H-paniculata_contig9441.17194.1 ID=prot_H-paniculata_contig9441.17194.1|Name=mRNA_H-paniculata_contig9441.17194.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
MVGLLAWAGSIYFASSLLSCSAFVHQARLFSGVTSRHHRTAASSCDSCLI
SRREGAVRNARDRKGAAARVFMKG
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mRNA from alignment at H-paniculata_contig9441:3886..5826-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9441.17194.1 ID=mRNA_H-paniculata_contig9441.17194.1|Name=mRNA_H-paniculata_contig9441.17194.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1941bp|location=Sequence derived from alignment at H-paniculata_contig9441:3886..5826- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCAGGTCTGACATTTGACATATATGGCGAAGAAAAATAGAATGTAGTAT
CGTGACCGCGAAGTCGAGTTGATGTGGTTGCTAGAGCTTGGGCATCGAGA
TCATGGTGGGCTTACTGGCATGGGCGGGTTCTATTTATTTTGCTTCTTCA
TTGTTGAGTTGCAGCGCTTTCGTCCATCAAGCACGACTGTTCTCGGGTGT
GACTTCAAGGCATCACAGGACCGCGGCATCATCATGTGACAGCTGCTTGA
TATCTCGAGTAAGTGGCCTTTGTTACTGACTGACTGTCTGTTTGGTGCAC
ATCTCGGTGCAATCGGGATTCACGTTCTGAATATGTTTGAACTGTGGCCC
ATAGTACACGCGAAAGCTCTGCTAGATTTGACTACACGGTACGTGCGTTG
TGCGATACTATCCTGCGCGACTGAGCGGCAGCTGTCTCGATGAGTATCAC
ATGCTTTCTCCTCTTCATGAGCAAACCAGTTACTGTATGTAATTTACGTA
CTGTTCTGTGCTGTCTTGTGCAGCAACGCTCAGACTCGCATCAGACTCGC
ATCAGACTCGCATCAGACTCACATCAGACTCGTGAGTCTTGGCTGCGAAT
GTATTCACATGCGCTGGGCAGTGTCACTACTTCAACAACACAGCTCAGCT
CAACAGTTCTACGCTGCTATACCTGAACAACTGTTGGCTGCAAAGTCATC
TGACACACGCCACTACTTTTTCTTCGTGGGGTTCTTGAAGTAGTTGTTCA
TCAGAGCTATACGCCTAAGTTGTTCACAAGGTGTTATAAGCCATCAAAGG
AGTGCCACCGAATACTGCAGCAAGTGAGCCTTGCAGGACAAGATGTTACC
AAGGCGCAACTGCTGGACATTTCGTTGATGCATCGCATGCCAGCAGTATC
CAGCAAGCTGGTGGCAGGCATGCGGAGCATTTCACAACCTTGCAACTTCA
TTTTTGATCAGTAATTATCACGGTACGTACCACGGGACGGAACCACGGGA
CAGGACGATCATAGATTTTGACCGGACCGGACGGGAGGACGGGACGAGAA
AGGTAAAGGTCATGTTTTGACGGCACATGAAGGGACAGGACCCGTTGTGA
CTCACACTTGATTAATGGACACGTCTCTTTCTGATACTGAACGGGACGAG
ACCGGACCGGACCTGACCGGACGAAACCCGATTGAACACAAAGGGACGGG
ACTGGAGAGACTGAACTCGGTTCGAAACAGTACCAGATCGGACGGGATAG
TGCCCCGTCCCGTCCCACCCCTTGAATGAAGGCCCCGTCGTCACGGGATC
AGCCCTCGTTTTGATCGATTTTTCGGCTGACCACCACCGGGCTCCCACCA
CTCATACCATCCCGTTAACCCTTTTGAGGCTCACACCTCGGAAATCTGTT
TTCTGGGAACTTCGTTTTGGCCATATTTCTACGCGAGTAGGCGTTAAATA
TGCTAGAAAATAGCGATAGAGGCGGTTGTACAGATGAGAAGGTGATTGCT
CGTCCTGTGTGAGAAGACCATTGGTTGATCCGTGGGCAGTTTACCCTCCT
CTGCCGAAAGAGCAACAGTGGTTGATTCACGCTTATCGTGCGCGCCAAAG
AGATTTAACAAACCGCTGTGTGTTTTTTCAACATGTCGTATAATGATAAA
GACGTGCTCTGGAGATCTGCCTTGTTTTGTAGGGCAATGCTGCTGTCACG
GCAGAAGCACTGACTGCATACTGCAGCAAACCAGAAGCTCGAAAAAAGCC
CGAAAAGCTCGATAACAAATGGTGTTTTCTATTACATCAAAGCCGTCGGT
TACTAATGAAGTCTGTCTGACCTGACCTTTTCTCCGCTCCCTCCATGATT
TTTTACCGGCCGTGGCCCGCCCCAGCGGGAGGGGGCAGTGAGAAACGCTA
GGGATCGCAAAGGCGCCGCCGCAAGGGTTTTTATGAAAGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig9441:3886..5826-

>mRNA_H-paniculata_contig9441.17194.1 ID=mRNA_H-paniculata_contig9441.17194.1|Name=mRNA_H-paniculata_contig9441.17194.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig9441:3886..5826- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGGCTTACTGGCATGGGCGGGTTCTATTTATTTTGCTTCTTCATT
GTTGAGTTGCAGCGCTTTCGTCCATCAAGCACGACTGTTCTCGGGTGTGA
CTTCAAGGCATCACAGGACCGCGGCATCATCATGTGACAGCTGCTTGATA
TCTCGAATGGTGGGCTTACTGGCATGGGCGGGTTCTATTTATTTTGCTTC
TTCATTGTTGAGTTGCAGCGCTTTCGTCCATCAAGCACGACTGTTCTCGG
GTGTGACTTCAAGGCATCACAGGACCGCGGCATCATCATGTGACAGCTGC
TTGATATCTCGACGGGAGGGGGCAGTGAGAAACGCTAGGGATCGCAAAGG
CGCCGCCGCAAGGGTTTTTATGAAAGGACGGGAGGGGGCAGTGAGAAACG
CTAGGGATCGCAAAGGCGCCGCCGCAAGGGTTTTTATGAAAGGA
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