mRNA_H-paniculata_contig9440.17192.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9440.17192.1
Unique NamemRNA_H-paniculata_contig9440.17192.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9440.17192.1 vs. uniprot
Match: D7FZ56_ECTSI (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ56_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 2.760e-25
Identity = 45/69 (65.22%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:    1 MGGHGHDDHDEMAGSATEAEMVANNIHLAFRDSCAHLLIDLNKCRSQTHSMPWECNHQRHIYEKCQYLE 207
            MGG    DHD M G ATE EMVA  + +AFRDSCAHLL+ LNKCR  T  +PW+C+H+RHIYEKCQYL+
Sbjct:    1 MGG----DHDGMEGKATEEEMVAAKMPMAFRDSCAHLLLPLNKCRRSTMYLPWQCSHERHIYEKCQYLD 65
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BLAST of mRNA_H-paniculata_contig9440.17192.1 vs. uniprot
Match: A0A6A6UGI8_9PEZI (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=1 Tax=Microthyrium microscopicum TaxID=703497 RepID=A0A6A6UGI8_9PEZI)

HSP 1 Score: 84.3 bits (207), Expect = 1.080e-19
Identity = 39/67 (58.21%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:    7 GHGHDDHDEMAGSATEAEMVANNIHLAFRDSCAHLLIDLNKCRSQTHSMPWECNHQRHIYEKCQYLE 207
            GHGH+D     G AT  EM A  + LA+RDSCAHLLI LNKCR +   +PW+C+H+RH YE CQY E
Sbjct:   14 GHGHED---PKGPATREEMTAARLPLAYRDSCAHLLIPLNKCRQKEWYLPWKCDHERHSYEGCQYAE 77
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BLAST of mRNA_H-paniculata_contig9440.17192.1 vs. uniprot
Match: S3C8Y8_OPHP1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=1 Tax=Ophiostoma piceae (strain UAMH 11346) TaxID=1262450 RepID=S3C8Y8_OPHP1)

HSP 1 Score: 81.6 bits (200), Expect = 8.850e-19
Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:    7 GHGHDDHDEMAGSATEAEMVANNIHLAFRDSCAHLLIDLNKCRSQTHSMPWECNHQRHIYEKCQYLE 207
            GHGHDD  E+   AT  +M    + LA+RDSCA+LLI LN+CR +T+ +PW+C  +RH YEKCQY+E
Sbjct:    2 GHGHDDLPELP-KATREQMSEAKLPLAYRDSCANLLIPLNRCRFETYYLPWKCETERHSYEKCQYIE 67
[Close]
BLAST of mRNA_H-paniculata_contig9440.17192.1 vs. uniprot
Match: UPI001B370808 (uncharacterized protein n=1 Tax=Cryphonectria parasitica EP155 TaxID=660469 RepID=UPI001B370808)

HSP 1 Score: 81.3 bits (199), Expect = 1.260e-18
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:   13 GHDDHDEMAGSATEAEMVANNIHLAFRDSCAHLLIDLNKCRSQTHSMPWECNHQRHIYEKCQYLE 207
            GHDD  EM   AT  EM    + +A+RDSCA LLI LN+CR +T+ +PW+C  +RH YEKCQY+E
Sbjct:    3 GHDDSFEMPQKATREEMRDAKLPMAYRDSCASLLIPLNRCRFETYYLPWKCEQERHTYEKCQYVE 67
[Close]
BLAST of mRNA_H-paniculata_contig9440.17192.1 vs. uniprot
Match: A0A6A6PDY7_9PEZI (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=1 Tax=Lineolata rhizophorae TaxID=578093 RepID=A0A6A6PDY7_9PEZI)

HSP 1 Score: 80.9 bits (198), Expect = 1.690e-18
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:   25 HDEMAGSATEAEMVANNIHLAFRDSCAHLLIDLNKCRSQTHSMPWECNHQRHIYEKCQYLE 207
            HD  AG A+  EM A  + LA+RDSCAHLLI LN+CR + + +PW+C ++RH YEKCQY E
Sbjct:    5 HDAPAGPASREEMSAAKLPLAYRDSCAHLLIPLNRCRVEEYYLPWKCENERHSYEKCQYEE 65
[Close]
BLAST of mRNA_H-paniculata_contig9440.17192.1 vs. uniprot
Match: A0A7S0PQY6_MICPS (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0PQY6_MICPS)

HSP 1 Score: 82.0 bits (201), Expect = 1.800e-18
Identity = 37/69 (53.62%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:   10 HGHDDHDEMAGSATEA--EMVAN-NIHLAFRDSCAHLLIDLNKCRSQTHSMPWECNHQRHIYEKCQYLE 207
            HG  D ++M GSA +A  +M+++  I LA+RD CAHLLI LN+CR +++ +PW+C H+RH+YEKCQY E
Sbjct:   45 HGERDREDMGGSAMQATQKMLSDAKIDLAYRDFCAHLLIPLNECRKRSYFLPWKCEHERHVYEKCQYKE 113
[Close]
BLAST of mRNA_H-paniculata_contig9440.17192.1 vs. uniprot
Match: A0A6H0XNW0_9PEZI (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=1 Tax=Peltaster fructicola TaxID=286661 RepID=A0A6H0XNW0_9PEZI)

HSP 1 Score: 80.9 bits (198), Expect = 2.330e-18
Identity = 38/67 (56.72%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:    7 GHGHDDHDEMAGSATEAEMVANNIHLAFRDSCAHLLIDLNKCRSQTHSMPWECNHQRHIYEKCQYLE 207
            GHGH    E  G AT  EM A  + L +RDSCAHLLI LNKCR + + +PW C  +RH YEKCQY E
Sbjct:   14 GHGHG---EPTGPATREEMSAAKVPLQYRDSCAHLLIPLNKCRFENYYLPWRCEQERHSYEKCQYEE 77
[Close]
BLAST of mRNA_H-paniculata_contig9440.17192.1 vs. uniprot
Match: A0A6A6HJ92_9PEZI (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=1 Tax=Viridothelium virens TaxID=1048519 RepID=A0A6A6HJ92_9PEZI)

HSP 1 Score: 80.1 bits (196), Expect = 4.830e-18
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    7 GHGHDDHDEMAGSATEAEMVANNIHLAFRDSCAHLLIDLNKCRSQTHSMPWECNHQRHIYEKCQYLE 207
            G GHD+H    G AT  +M    + LA+RDSCAHLLI LN+CR   + +PW+C  +RH YEKCQY E
Sbjct:   12 GLGHDEHGAPKGPATREQMSEAKLPLAYRDSCAHLLIPLNRCRYDQYFLPWKCETERHSYEKCQYEE 78
[Close]
BLAST of mRNA_H-paniculata_contig9440.17192.1 vs. uniprot
Match: A0A517LK83_9PEZI (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=1 Tax=Venturia effusa TaxID=50376 RepID=A0A517LK83_9PEZI)

HSP 1 Score: 80.1 bits (196), Expect = 5.090e-18
Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    7 GHGHDDHDEMAGSATEAEMVANNIHLAFRDSCAHLLIDLNKCRSQTHSMPWECNHQRHIYEKCQYLE 207
            GHGHD      G AT  +M A  + +A+RDSCAHLLI LN+CR   + +PW+C ++RH YEKCQY E
Sbjct:   14 GHGHD---TPTGPATSEQMSAARLPMAYRDSCAHLLIPLNRCRQAEYYLPWKCENERHTYEKCQYEE 77
[Close]
BLAST of mRNA_H-paniculata_contig9440.17192.1 vs. uniprot
Match: R7YQ85_CONA1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=1 Tax=Coniosporium apollinis (strain CBS 100218) TaxID=1168221 RepID=R7YQ85_CONA1)

HSP 1 Score: 79.7 bits (195), Expect = 6.670e-18
Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:    7 GHGHDDHDEMAGSATEAEMVANNIHLAFRDSCAHLLIDLNKCRSQTHSMPWECNHQRHIYEKCQYLE 207
            GHGH D    +G AT  EM A  + LA+RDSCAHLLI LN+CR +   +PW+C ++RH YEKCQY E
Sbjct:   14 GHGHPD---PSGPATREEMSAARLPLAYRDSCAHLLIPLNQCRYREMYLPWKCENERHSYEKCQYEE 77
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9440.17192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ56_ECTSI2.760e-2565.22NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A6A6UGI8_9PEZI1.080e-1958.21NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
S3C8Y8_OPHP18.850e-1955.22NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
UPI001B3708081.260e-1855.38uncharacterized protein n=1 Tax=Cryphonectria para... [more]
A0A6A6PDY7_9PEZI1.690e-1857.38NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A7S0PQY6_MICPS1.800e-1853.62NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A6H0XNW0_9PEZI2.330e-1856.72NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A6A6HJ92_9PEZI4.830e-1853.73NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A517LK83_9PEZI5.090e-1853.73NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
R7YQ85_CONA16.670e-1856.72NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9440contigH-paniculata_contig9440:5672..5881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue2.1e-18
Seed eggNOG ortholog2880.D7FZ56
Preferred nameNDUFB7
KEGG koko:K03963,ko:K04498
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04024,ko04066,ko04068,ko04110,ko04310,ko04330,ko04350,ko04520,ko04630,ko04714,ko04720,ko04723,ko04916,ko04919,ko04922,ko04932,ko05010,ko05012,ko05016,ko05152,ko05161,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05206,ko05211,ko05215,map00190,map01100,map04024,map04066,map04068,map04110,map04310,map04330,map04350,map04520,map04630,map04714,map04720,map04723,map04916,map04919,map04922,map04932,map05010,map05012,map05016,map05152,map05161,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05203,map05206,map05211,map05215
KEGG ModuleM00147
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005758,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009853,GO:0009987,GO:0010257,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0042773,GO:0042775,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0065003,GO:0070013,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
EggNOG free text desc.NADH dehydrogenase (quinone) activity
EggNOG OGsKOG3468@1,KOG3468@2759
Ec32 ortholog descriptionNADH:ubiquinone oxidoreductase, B18 subunit
Ec32 orthologEc-02_006350.1
EC2.3.1.48
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03000,ko03029,ko03036
Exons1
Model size210
Cds size210
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931174.0840232-CDS-H-paniculata_contig9440:5671..58811622931174.0840232-CDS-H-paniculata_contig9440:5671..5881Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9440 5672..5881 -
1691481623.8590515-CDS-H-paniculata_contig9440:5671..58811691481623.8590515-CDS-H-paniculata_contig9440:5671..5881Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9440 5672..5881 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9440.17192.1prot_H-paniculata_contig9440.17192.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9440 5672..5881 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9440.17192.1

>prot_H-paniculata_contig9440.17192.1 ID=prot_H-paniculata_contig9440.17192.1|Name=mRNA_H-paniculata_contig9440.17192.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
MGGHGHDDHDEMAGSATEAEMVANNIHLAFRDSCAHLLIDLNKCRSQTHS
MPWECNHQRHIYEKCQYLE*
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mRNA from alignment at H-paniculata_contig9440:5672..5881-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9440.17192.1 ID=mRNA_H-paniculata_contig9440.17192.1|Name=mRNA_H-paniculata_contig9440.17192.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=210bp|location=Sequence derived from alignment at H-paniculata_contig9440:5672..5881- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGGACACGGCCACGACGACCACGATGAGATGGCGGGAAGCGCAAC
GGAGGCAGAGATGGTGGCGAACAACATTCACCTGGCGTTTCGGGACTCGT
GCGCACACCTACTCATTGACCTAAACAAGTGCCGATCGCAAACGCATTCA
ATGCCCTGGGAATGCAATCACCAGCGCCACATCTACGAGAAGTGCCAGTA
TCTTGAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig9440:5672..5881-

>mRNA_H-paniculata_contig9440.17192.1 ID=mRNA_H-paniculata_contig9440.17192.1|Name=mRNA_H-paniculata_contig9440.17192.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig9440:5672..5881- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGGACACGGCCACGACGACCACGATGAGATGGCGGGAAGCGCAAC
GGAGGCAGAGATGGTGGCGAACAACATTCACCTGGCGTTTCGGGACTCGT
GCGCACACCTACTCATTGACCTAAACAAGTGCCGATCGCAAACGCATTCA
ATGCCCTGGGAATGCAATCACCAGCGCCACATCTACGAGAAGTGCCAGTA
TCTTGAGTGAATGGGAGGACACGGCCACGACGACCACGATGAGATGGCGG
GAAGCGCAACGGAGGCAGAGATGGTGGCGAACAACATTCACCTGGCGTTT
CGGGACTCGTGCGCACACCTACTCATTGACCTAAACAAGTGCCGATCGCA
AACGCATTCAATGCCCTGGGAATGCAATCACCAGCGCCACATCTACGAGA
AGTGCCAGTATCTTGAGTGA
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