mRNA_H-paniculata_contig944.17191.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig944.17191.1
Unique NamemRNA_H-paniculata_contig944.17191.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig944.17191.1 vs. uniprot
Match: D7G9I4_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9I4_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 6.930e-17
Identity = 57/147 (38.78%), Postives = 82/147 (55.78%), Query Frame = 3 
Query:  363 VPAFLDRTYAMVDEKGSDEIVSWGSLGDTFVIKRLDLFEEEVIPRFFNHRNLFSFVRQLNNHGFSKVRQGHSSRNNPSASKQTRAGSGRTSGNSXXXXXXXXXXXXXXXXSSSAKGKQDPNVWWEFKHPNFQRGRRELMSEIKRRKE 803
            +P FLDRT++ +++   D IV W  +GD+F++K++  FE  ++P ++NH+   SFVRQLN +GF KVR               R  S R S              XXXXX   A   ++   W EFKHP F+RGRR+L+  IKR+K+
Sbjct:   19 IPVFLDRTFSFIEDTSPD-IVCWSEVGDSFIVKKVLAFEG-LLPSYYNHKKFLSFVRQLNFYGFKKVRG--------------RGASSRASS-------------XXXXXXXXAAEAEESASWEEFKHPQFRRGRRDLLVGIKRQKD 136
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BLAST of mRNA_H-paniculata_contig944.17191.1 vs. uniprot
Match: A0A8H7S2J1_9FUNG (HSF_DOMAIN domain-containing protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7S2J1_9FUNG)

HSP 1 Score: 87.4 bits (215), Expect = 7.060e-16
Identity = 48/149 (32.21%), Postives = 70/149 (46.98%), Query Frame = 3 
Query:  363 VPAFLDRTYAMVDEKGSDEIVSWGSLGDTFVIKRLDLFEEEVIPRFFNHRNLFSFVRQLNNHGFSKVRQGHSSRNNPSASKQTRAGSGRTSGNSXXXXXXXXXXXXXXXXSSSAKGKQDPNVWWEFKHPNFQRGRRELMSEIKRRKEKS 809
            V AF+ + Y+MV++K   +++SWG+ G++F+I     F  +V+P  F H N  SFVRQLN +GF K+ +                                         +S  K   D N  WEF HP FQR R++ +SEIKR+   S
Sbjct:  108 VSAFIKKLYSMVNDKSHQDLISWGTTGESFIIYNSKKFSRQVLPEHFKHGNFSSFVRQLNMYGFRKINK-----------------------------------------ASRGKHGTDQNELWEFMHPQFQRDRKDKLSEIKRKAANS 215
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BLAST of mRNA_H-paniculata_contig944.17191.1 vs. uniprot
Match: A0A6V1M1F4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1M1F4_HETAK)

HSP 1 Score: 85.5 bits (210), Expect = 2.630e-15
Identity = 53/147 (36.05%), Postives = 70/147 (47.62%), Query Frame = 3 
Query:  363 VPAFLDRTYAMVDEKGSDEIVSWGSLGDTFVIKRLDLFEEEVIPRFFNHRNLFSFVRQLNNHGFSKVRQGHSSRNNPSASKQTRAGSGRTSGNSXXXXXXXXXXXXXXXXSSSAKGKQDPNV---WWEFKHPNFQRGRRELMSEIKR 794
            +  F+ +T+ M++E    EI SW   G  FV+K+ D F +E+IPRFF H  L SFVRQLN +GF KV+                                           SSA+ K D +    WWEF HP FQRGR +L+ +IKR
Sbjct:   40 IQTFIRKTFEMINECNY-EIASWTDDGQRFVVKQPDKFAQEMIPRFFKHNKLSSFVRQLNFYGFRKVQ-------------------------------------------SSARNKVDEDETREWWEFHHPQFQRGREDLLCDIKR 142
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BLAST of mRNA_H-paniculata_contig944.17191.1 vs. uniprot
Match: A0A485KSA3_9STRA (Aste57867_11207 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KSA3_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.660e-14
Identity = 52/165 (31.52%), Postives = 79/165 (47.88%), Query Frame = 3 
Query:  345 PRAIGPVPAFLDRTYAMVDEKGSDEIVSWGSLGDTFVIKRLDLFEEEVIPRFFNHRNLFSFVRQLNNHGFSKVRQ--------GHSSRNNPSASKQTRAGSGRTSGNSXXXXXXXXXXXXXXXXSSSAKGKQDPNVWWEFKHPNFQRGRRELMSEIKRRKEKSSS 815
            P  +  VP FL +TY M+D   +D I +W + G++F+IKR++ F  E++PR+F H N  SF RQLN +GF KV++        G++S  +P  + +                               A+G      WWEF HP F R + E M  I+R+    S+
Sbjct:   42 PMTMNHVPVFLQKTYDMIDNC-TDAIATWSTTGESFIIKRINEFASEILPRYFKHNNFSSFARQLNFYGFHKVKKEDILLRAKGNASPTDPDTALE-------------------------------AQG------WWEFSHPLFLRDQPEKMGSIRRKTYADSN 168
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BLAST of mRNA_H-paniculata_contig944.17191.1 vs. uniprot
Match: A0A803KSC2_CHEQI (HSF_DOMAIN domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803KSC2_CHEQI)

HSP 1 Score: 80.9 bits (198), Expect = 2.200e-14
Identity = 35/68 (51.47%), Postives = 49/68 (72.06%), Query Frame = 3 
Query:  360 PVPAFLDRTYAMVDEKGSDEIVSWGSLGDTFVIKRLDLFEEEVIPRFFNHRNLFSFVRQLNNHGFSKV 563
            P P FL +TY MVD+K SD+++SWG  G TFV+ +   F ++++P+FF H N  SFVRQLN +GF K+
Sbjct:    7 PAP-FLTKTYEMVDDKTSDDVISWGENGSTFVVWKTAEFAKDLLPKFFKHNNFSSFVRQLNTYGFRKI 73
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BLAST of mRNA_H-paniculata_contig944.17191.1 vs. uniprot
Match: A0A177UEN2_9BASI (Response regulatory domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177UEN2_9BASI)

HSP 1 Score: 84.3 bits (207), Expect = 3.100e-14
Identity = 53/155 (34.19%), Postives = 81/155 (52.26%), Query Frame = 3 
Query:  351 AIGPVPA-----FLDRTYAMVDEKGSDEIVSWGSLGDTFVIKRLDLFEEEVIPRFFNHRNLFSFVRQLNNHGFSKVRQGHSSRN-NPSASKQTRAGSGRTSGNSXXXXXXXXXXXXXXXXSSSAKGKQDPNVWWEFKHPNFQRGRRELMSEIKRR 797
            A+ P+P+     F+ + + M+D++  + IVSWG+ GDTFV+K ++ F + V+PR F H N  SFVRQLN + F KV+  + S + +P A                               + SA G Q     WEF+HP+F RGR +L+  +KR+
Sbjct:  279 ALPPLPSKGASDFVKKLFNMLDDELYEPIVSWGANGDTFVVKNMNDFTKHVLPRHFRHSNFASFVRQLNKYDFHKVKSANGSDDMDPMA-------------------------------NISASGDQI----WEFRHPDFVRGREDLLESVKRK 398
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BLAST of mRNA_H-paniculata_contig944.17191.1 vs. uniprot
Match: A0A4D8Y8Q4_SALSN (Heat shock transcription factor, other eukaryote n=3 Tax=Salvia TaxID=21880 RepID=A0A4D8Y8Q4_SALSN)

HSP 1 Score: 82.0 bits (201), Expect = 3.580e-14
Identity = 35/72 (48.61%), Postives = 49/72 (68.06%), Query Frame = 3 
Query:  348 RAIGPVPAFLDRTYAMVDEKGSDEIVSWGSLGDTFVIKRLDLFEEEVIPRFFNHRNLFSFVRQLNNHGFSKV 563
            +  GP PAFL +T+ MV++  S+ I+SWG LGD+F+I     F  E++P +F H N  SFV QLNN+GF K+
Sbjct:   21 KGFGPPPAFLTKTFHMVNDPNSNSIISWGKLGDSFIIWDHIKFSVEILPNYFRHNNFSSFVYQLNNYGFRKI 92
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BLAST of mRNA_H-paniculata_contig944.17191.1 vs. uniprot
Match: UPI00053CA2E0 (heat stress transcription factor A-1e-like isoform X1 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053CA2E0)

HSP 1 Score: 83.2 bits (204), Expect = 4.820e-14
Identity = 35/73 (47.95%), Postives = 52/73 (71.23%), Query Frame = 3 
Query:  345 PRAIGPVPAFLDRTYAMVDEKGSDEIVSWGSLGDTFVIKRLDLFEEEVIPRFFNHRNLFSFVRQLNNHGFSKV 563
            P A+  VP FL +TY MVD+  ++E+VSW S  ++FV++ +  F +E++P++F H N  SFVRQLN +GF KV
Sbjct:   13 PPAVNSVPPFLSKTYDMVDDPSTNEVVSWSSGNNSFVVRNVPEFTKELLPKYFKHNNFSSFVRQLNTYGFRKV 85
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BLAST of mRNA_H-paniculata_contig944.17191.1 vs. uniprot
Match: D8QMW7_SELML (HSF_DOMAIN domain-containing protein (Fragment) n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QMW7_SELML)

HSP 1 Score: 76.6 bits (187), Expect = 4.920e-14
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 3 
Query:  372 FLDRTYAMVDEKGSDEIVSWGSLGDTFVIKRLDLFEEEVIPRFFNHRNLFSFVRQLNNHGFSKV 563
            FL +T+ +VD+ GSD+IVSWGS G TFV+ +   F  +++P +F H N  SFVRQLN +GF KV
Sbjct:    2 FLTKTFQLVDDPGSDDIVSWGSDGTTFVVWKPPEFATDLLPSYFKHNNFSSFVRQLNTYGFRKV 65
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BLAST of mRNA_H-paniculata_contig944.17191.1 vs. uniprot
Match: A0A803KXX1_CHEQI (HSF_DOMAIN domain-containing protein n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803KXX1_CHEQI)

HSP 1 Score: 80.9 bits (198), Expect = 5.790e-14
Identity = 35/68 (51.47%), Postives = 49/68 (72.06%), Query Frame = 3 
Query:  360 PVPAFLDRTYAMVDEKGSDEIVSWGSLGDTFVIKRLDLFEEEVIPRFFNHRNLFSFVRQLNNHGFSKV 563
            P P FL +TY MVD+K SD+++SWG  G TFV+ +   F ++++P+FF H N  SFVRQLN +GF K+
Sbjct:    7 PAP-FLTKTYEMVDDKTSDDVISWGENGSTFVVWKTAEFAKDLLPKFFKHNNFSSFVRQLNTYGFRKI 73
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig944.17191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9I4_ECTSI6.930e-1738.78N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A8H7S2J1_9FUNG7.060e-1632.21HSF_DOMAIN domain-containing protein n=1 Tax=Mucor... [more]
A0A6V1M1F4_HETAK2.630e-1536.05Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A485KSA3_9STRA1.660e-1431.52Aste57867_11207 protein n=1 Tax=Aphanomyces stella... [more]
A0A803KSC2_CHEQI2.200e-1451.47HSF_DOMAIN domain-containing protein n=1 Tax=Cheno... [more]
A0A177UEN2_9BASI3.100e-1434.19Response regulatory domain-containing protein n=2 ... [more]
A0A4D8Y8Q4_SALSN3.580e-1448.61Heat shock transcription factor, other eukaryote n... [more]
UPI00053CA2E04.820e-1447.95heat stress transcription factor A-1e-like isoform... [more]
D8QMW7_SELML4.920e-1453.13HSF_DOMAIN domain-containing protein (Fragment) n=... [more]
A0A803KXX1_CHEQI5.790e-1451.47HSF_DOMAIN domain-containing protein n=2 Tax=Cheno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig944contigH-paniculata_contig944:18586..21213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue1.7e-16
Seed eggNOG ortholog272952.HpaP805361
Preferred nameHSF4
KEGG koko:K09414,ko:K09415,ko:K09416,ko:K09417,ko:K09419
KEGG Pathwayko04212,ko05134,map04212,map05134
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000122,GO:0000165,GO:0000228,GO:0000280,GO:0000302,GO:0000775,GO:0000776,GO:0000785,GO:0000790,GO:0000791,GO:0000792,GO:0000922,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001046,GO:0001047,GO:0001067,GO:0001078,GO:0001101,GO:0001161,GO:0001162,GO:0001227,GO:0001228,GO:0001654,GO:0001701,GO:0001817,GO:0001818,GO:0001890,GO:0001892,GO:0001932,GO:0001934,GO:0002119,GO:0002164,GO:0002237,GO:0002376,GO:0002673,GO:0003006,GO:0003008,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0003697,GO:0003700,GO:0003712,GO:0003713,GO:0003714,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006282,GO:0006325,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006468,GO:0006482,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0006979,GO:0006986,GO:0006996,GO:0007049,GO:0007143,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007283,GO:0007292,GO:0007346,GO:0007423,GO:0007565,GO:0007568,GO:0007600,GO:0007601,GO:0008150,GO:0008152,GO:0008214,GO:0008284,GO:0008285,GO:0008340,GO:0009058,GO:0009059,GO:0009266,GO:0009299,GO:0009314,GO:0009408,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009628,GO:0009635,GO:0009636,GO:0009719,GO:0009725,GO:0009790,GO:0009791,GO:0009792,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010212,GO:0010243,GO:0010259,GO:0010332,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010656,GO:0010660,GO:0010662,GO:0010664,GO:0010665,GO:0010667,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0014070,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016310,GO:0016569,GO:0016570,GO:0016577,GO:0016604,GO:0016605,GO:0016607,GO:0017085,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0019902,GO:0019903,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030162,GO:0031072,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031331,GO:0031347,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031401,GO:0031440,GO:0031442,GO:0031490,GO:0031620,GO:0031647,GO:0031650,GO:0031974,GO:0031981,GO:0032092,GO:0032101,GO:0032268,GO:0032269,GO:0032270,GO:0032355,GO:0032496,GO:0032501,GO:0032502,GO:0032504,GO:0032680,GO:0032720,GO:0032774,GO:0032870,GO:0032991,GO:0033169,GO:0033554,GO:0033574,GO:0033993,GO:0034599,GO:0034605,GO:0034614,GO:0034620,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0035690,GO:0035770,GO:0035966,GO:0035967,GO:0036003,GO:0036211,GO:0040008,GO:0040014,GO:0040018,GO:0040024,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042493,GO:0042509,GO:0042531,GO:0042542,GO:0042742,GO:0042802,GO:0042803,GO:0042981,GO:0043009,GO:0043010,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043085,GO:0043170,GO:0043200,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043280,GO:0043281,GO:0043388,GO:0043393,GO:0043412,GO:0043434,GO:0043497,GO:0043565,GO:0043618,GO:0043620,GO:0043621,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044212,GO:0044213,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0044706,GO:0045087,GO:0045120,GO:0045595,GO:0045597,GO:0045738,GO:0045787,GO:0045862,GO:0045892,GO:0045893,GO:0045927,GO:0045931,GO:0045934,GO:0045935,GO:0045937,GO:0045944,GO:0046425,GO:0046427,GO:0046483,GO:0046677,GO:0046685,GO:0046686,GO:0046688,GO:0046982,GO:0046983,GO:0048232,GO:0048285,GO:0048468,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048568,GO:0048583,GO:0048584,GO:0048585,GO:0048608,GO:0048609,GO:0048638,GO:0048639,GO:0048731,GO:0048856,GO:0048869,GO:0050684,GO:0050685,GO:0050727,GO:0050730,GO:0050731,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050821,GO:0050829,GO:0050832,GO:0050877,GO:0050896,GO:0050953,GO:0051052,GO:0051053,GO:0051054,GO:0051094,GO:0051098,GO:0051099,GO:0051101,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051259,GO:0051260,GO:0051276,GO:0051321,GO:0051336,GO:0051345,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0051879,GO:0052547,GO:0052548,GO:0060136,GO:0060255,GO:0060548,GO:0061408,GO:0061458,GO:0061770,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070076,GO:0070206,GO:0070207,GO:0070301,GO:0070887,GO:0070988,GO:0071214,GO:0071229,GO:0071230,GO:0071236,GO:0071241,GO:0071243,GO:0071248,GO:0071276,GO:0071280,GO:0071310,GO:0071375,GO:0071392,GO:0071396,GO:0071407,GO:0071417,GO:0071478,GO:0071479,GO:0071480,GO:0071495,GO:0071704,GO:0071840,GO:0072686,GO:0072737,GO:0072738,GO:0080090,GO:0080134,GO:0080135,GO:0090068,GO:0090083,GO:0090084,GO:0090261,GO:0090304,GO:0097159,GO:0097165,GO:0097237,GO:0097327,GO:0097431,GO:0097659,GO:0097677,GO:0098542,GO:0098687,GO:0098847,GO:0104004,GO:0140013,GO:0140110,GO:1900034,GO:1900117,GO:1900119,GO:1900363,GO:1900365,GO:1901214,GO:1901215,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901652,GO:1901653,GO:1901654,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901987,GO:1901989,GO:1902074,GO:1902075,GO:1902510,GO:1902512,GO:1902531,GO:1902533,GO:1902679,GO:1902680,GO:1902749,GO:1902751,GO:1902806,GO:1902808,GO:1903046,GO:1903311,GO:1903313,GO:1903320,GO:1903321,GO:1903506,GO:1903507,GO:1903508,GO:1903555,GO:1903556,GO:1903624,GO:1903626,GO:1903935,GO:1903936,GO:1904385,GO:1904526,GO:1904528,GO:1904892,GO:1904894,GO:1990776,GO:1990837,GO:1990841,GO:1990904,GO:2000112,GO:2000113,GO:2000116,GO:2000779,GO:2000780,GO:2001020,GO:2001021,GO:2001032,GO:2001033,GO:2001056,GO:2001141
EggNOG free text desc.heat shock factor
EggNOG OGs3Q9YS@4776,COG5169@1,KOG0627@2759
COG Functional cat.K
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000
Exons2
Model size977
Cds size690
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig944.17191.1prot_H-paniculata_contig944.17191.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig944 18640..20980 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931173.9670146-UTR-H-paniculata_contig944:18585..186391622931173.9670146-UTR-H-paniculata_contig944:18585..18639Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig944 18586..18639 -
1691481623.8224251-UTR-H-paniculata_contig944:18585..186391691481623.8224251-UTR-H-paniculata_contig944:18585..18639Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig944 18586..18639 -
1622931174.0108721-UTR-H-paniculata_contig944:20980..212131622931174.0108721-UTR-H-paniculata_contig944:20980..21213Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig944 20981..21213 -
1691481623.8497994-UTR-H-paniculata_contig944:20980..212131691481623.8497994-UTR-H-paniculata_contig944:20980..21213Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig944 20981..21213 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931173.9793403-CDS-H-paniculata_contig944:18639..190131622931173.9793403-CDS-H-paniculata_contig944:18639..19013Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig944 18640..19013 -
1691481623.8331974-CDS-H-paniculata_contig944:18639..190131691481623.8331974-CDS-H-paniculata_contig944:18639..19013Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig944 18640..19013 -
1622931173.9991782-CDS-H-paniculata_contig944:20664..209801622931173.9991782-CDS-H-paniculata_contig944:20664..20980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig944 20665..20980 -
1691481623.8416688-CDS-H-paniculata_contig944:20664..209801691481623.8416688-CDS-H-paniculata_contig944:20664..20980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig944 20665..20980 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig944.17191.1

>prot_H-paniculata_contig944.17191.1 ID=prot_H-paniculata_contig944.17191.1|Name=mRNA_H-paniculata_contig944.17191.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=230bp
MSNKRGKGEATDQDTATSPPVEKDARERCVENETGQRPRAIGPVPAFLDR
TYAMVDEKGSDEIVSWGSLGDTFVIKRLDLFEEEVIPRFFNHRNLFSFVR
QLNNHGFSKVRQGHSSRNNPSASKQTRAGSGRTSGNSSGGGGGTAAGAKG
ASGSSSAKGKQDPNVWWEFKHPNFQRGRRELMSEIKRRKEKSSSYSASGV
CACMYVCLFLKRFSCRGYFVNSMQVQTPA*
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mRNA from alignment at H-paniculata_contig944:18586..21213-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig944.17191.1 ID=mRNA_H-paniculata_contig944.17191.1|Name=mRNA_H-paniculata_contig944.17191.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2628bp|location=Sequence derived from alignment at H-paniculata_contig944:18586..21213- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTACAAACAGGTGATGCACGTGAGCATACAGAAATCAACACAACAACC
CAGCATCTTCTGCAAGGGGGTAAGGCGGAGCGGTACACAACTGCACAGTA
CACGAGCGGATAATACACAGGCACTCATCGGATATCCCAGTCTTAGCACG
CTGTCGTGAGGCAGGCTGACTGACTGGCGTACCCGCATACTCCCTACAGA
CAGTCTTGGCCACTTTGTATTGTAGAAACAATTATGTCGAACAAGAGAGG
CAAGGGAGAGGCGACGGACCAAGACACCGCGACGTCACCTCCAGTTGAAA
AAGATGCCCGCGAGAGGTGCGTCGAAAACGAGACGGGGCAGCGGCCAAGA
GCTATCGGTCCGGTCCCTGCGTTTCTGGATCGCACTTACGCCATGGTGGA
TGAGAAAGGCTCTGACGAGATTGTGTCGTGGGGTTCTCTGGGAGACACGT
TCGTGATCAAGCGACTTGATCTGTTTGAGGAGGAAGTCATCCCCAGATTT
TTCAATCACCGGAACTTGTTTTCGTTTGTCAGGCAGCTCAATAACCATGG
TGAGCAGATAAGTGAGAGCGTTTCGAGAGTAAAGTGAACACCTAAGCGTG
CGCGGGCGCGCACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAA
TCTCGGTAGAAGTGCATTCGTCATGATGGTGTAGGTGTGTGCAGGAGGTG
GGCTGGGGGCAACCGCTGTCGGGGAAAATTGAGCAACACCATGTCCCTGC
CCACCCCGGAATGTCCGCTCTCCAAAAAGAAGGCCGGATAGAAAAAAAGA
CGATTATGTATTGCCCGGCCCAAAAAGAAAAAAAAAATGAGGTTGAAAAC
GGAAATATGTTGTTGGTTGCATCTCACACATGCAACAGGACAGATTATGT
TCGTGGCCGGTGAACACTGGGAAGTTCTGCTTTGGCAGCCTTTTGAGTCT
TTCGTGTGCTACACCAGTACGTCGTATACAGAGGGCTATTTGATAGTGGT
TAGACATTGTGTACACGAGTGATGAAATGCTAGGGCTAGGCGGACGTGAG
AACGGATTTTATGTGTCGGACAATGTGGTTCACAAATTCGAGGCGGGTAT
AAAATATACCCAGTGTGTGCTGGCTCGACATGTGGTTCACAACATGGAGG
CGGGTACAAAATTACGCACCGTGCGGTCGGTCAAAAAAATAACTACACCG
ACCAGAACATGCTTAACCCGTCCGCAAACCCCCAATTGCCACGCGACAAC
TGTCGTGTGTTGGCAGAGTGTAGTGTTCCTGTGCGATAGCTAGCCGCACG
TGTAAACTGCCCCTCGCAATAGGAAATCAGCTGAACAGTCGCAAAGGGTA
AATAGGATAGAGGGGAATAAAGAAAAAAAGATGTACTCATAAACCCTACT
GACCGTTTTGCCTCTTTAACAACTTCCGTGCATCATAATTTCTCACAAAT
GTGCACACCGTCCAGCCGGTCAGCCAGATGCCGAAATACTAACTTGCGGT
TTAAACGTAGAAGGGTAGGACGGTAGAACATCCCATTGGCCTACATCAAA
CCACGCGGCGACCACCGCAGTGAGTTTGTCAGGGAGAAGTGTTCTCGTGT
GGTGCCTGAATGCGGGTGCAAGCTGTCCCTGTGGTTTGATCTAGCTGATG
AGACCATGAGATGGTAAATCATCAATGATTTACAAGAAGAAAGGATCTGA
TGAAACCCGATCGAATTTTTCTTCACCGTTTTCGACGTGCTTCTTGGAAG
ATGACCAGTGCATCACTGTTCGAATATCATGATAGTTCTCGGTCGCTGAA
GTTATCACAAAAAATCAAACTAAAATATTATCCTGCAGTAAGGATAGGCC
CGGGTGGTAACTGCAGGTCGTTATCACGGTACTACTTTTTTTCTGTTTTG
GAATCATCAACCAATCAACCAACCGGCTGTATGGTTTGATCCAAAAACTT
CAAACGGTCTCAAATAGGATAAAGGAAGGCATCGACGCAATTGCAGGTTG
AAAAGTATGGCTCAAGTGCGGCAACATTCACCACAAACCTGCGTTAATAA
ACACCGTTTCCCCCCACCGACAGGCAGTACAGTAGTTCACTAGTTCACGG
CAACTGTCGTCGCCCTCCCTTGGGTACATCATTTACGAGCCGTGTGTGTG
CGTGCGTGTTGTGGGTATATTTTTGCCCATTGCCCATTTACACAAACCAG
GCTTTTCGAAAGTGCGGCAAGGCCACTCGTCCAGGAACAATCCATCCGCT
TCCAAACAAACGCGTGCGGGGAGTGGGCGTACCAGCGGCAACTCCTCGGG
CGGGGGCGGTGGGACGGCCGCCGGTGCCAAGGGTGCGTCTGGCTCTTCTT
CGGCCAAGGGCAAGCAGGACCCCAACGTCTGGTGGGAGTTCAAGCACCCG
AACTTTCAACGTGGAAGACGGGAGCTGATGTCGGAGATAAAGCGGCGCAA
GGAGAAGTCGTCGTCGTATTCGGCATCAGGTGTATGTGCGTGTATGTATG
TTTGTTTGTTTTTGAAGAGGTTCTCTTGTCGAGGTTATTTCGTGAACAGC
ATGCAAGTTCAAACGCCGGCGTGATTGACCCAAAGATCATGCGTTTTCTA
ATGGAACAGGCGGGAAATTTCCCACATG
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Coding sequence (CDS) from alignment at H-paniculata_contig944:18586..21213-

>mRNA_H-paniculata_contig944.17191.1 ID=mRNA_H-paniculata_contig944.17191.1|Name=mRNA_H-paniculata_contig944.17191.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1380bp|location=Sequence derived from alignment at H-paniculata_contig944:18586..21213- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGAACAAGAGAGGCAAGGGAGAGGCGACGGACCAAGACACCGCGAC
GTCACCTCCAGTTGAAAAAGATGCCCGCGAGAGGTGCGTCGAAAACGAGA
CGGGGCAGCGGCCAAGAGCTATCGGTCCGGTCCCTGCGTTTCTGGATCGC
ACTTACGCCATGGTGGATGAGAAAGGCTCTGACGAGATTGTGTCGTGGGG
TTCTCTGGGAGACACGTTCGTGATCAAGCGACTTGATCTGTTTGAGGAGG
AAGTCATCCCCAGATTTTTCAATCACCGGAACTTGTTTTCGTTTGTCAGG
CAGCTCAATAACCATGATGTCGAACAAGAGAGGCAAGGGAGAGGCGACGG
ACCAAGACACCGCGACGTCACCTCCAGTTGAAAAAGATGCCCGCGAGAGG
TGCGTCGAAAACGAGACGGGGCAGCGGCCAAGAGCTATCGGTCCGGTCCC
TGCGTTTCTGGATCGCACTTACGCCATGGTGGATGAGAAAGGCTCTGACG
AGATTGTGTCGTGGGGTTCTCTGGGAGACACGTTCGTGATCAAGCGACTT
GATCTGTTTGAGGAGGAAGTCATCCCCAGATTTTTCAATCACCGGAACTT
GTTTTCGTTTGTCAGGCAGCTCAATAACCATGGCTTTTCGAAAGTGCGGC
AAGGCCACTCGTCCAGGAACAATCCATCCGCTTCCAAACAAACGCGTGCG
GGGAGTGGGCGTACCAGCGGCAACTCCTCGGGCGGGGGCGGTGGGACGGC
CGCCGGTGCCAAGGGTGCGTCTGGCTCTTCTTCGGCCAAGGGCAAGCAGG
ACCCCAACGTCTGGTGGGAGTTCAAGCACCCGAACTTTCAACGTGGAAGA
CGGGAGCTGATGTCGGAGATAAAGCGGCGCAAGGAGAAGTCGTCGTCGTA
TTCGGCATCAGGTGTATGTGCGTGTATGTATGTTTGTTTGTTTTTGAAGA
GGTTCTCTTGTCGAGGTTATTTCGTGAACAGCATGCAAGTTCAAACGCCG
GCGTGAGCTTTTCGAAAGTGCGGCAAGGCCACTCGTCCAGGAACAATCCA
TCCGCTTCCAAACAAACGCGTGCGGGGAGTGGGCGTACCAGCGGCAACTC
CTCGGGCGGGGGCGGTGGGACGGCCGCCGGTGCCAAGGGTGCGTCTGGCT
CTTCTTCGGCCAAGGGCAAGCAGGACCCCAACGTCTGGTGGGAGTTCAAG
CACCCGAACTTTCAACGTGGAAGACGGGAGCTGATGTCGGAGATAAAGCG
GCGCAAGGAGAAGTCGTCGTCGTATTCGGCATCAGGTGTATGTGCGTGTA
TGTATGTTTGTTTGTTTTTGAAGAGGTTCTCTTGTCGAGGTTATTTCGTG
AACAGCATGCAAGTTCAAACGCCGGCGTGA
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