mRNA_H-paniculata_contig1273.1718.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1273.1718.1
Unique NamemRNA_H-paniculata_contig1273.1718.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1273.1718.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 281 bits (720), Expect = 1.680e-84
Identity = 161/356 (45.22%), Postives = 212/356 (59.55%), Query Frame = 3
Query:  360 ELMKVVEGENGKEPWFSTPTTDIAGRQSIPLKLKVLGVRQVLARGNCYDDVTQLSYISESVAIAFFYEFCETFVFELYSSWVSLPDGSALQKVMKHYDSLCFTGAVGSVDVDHVHWDCAPYLHRQLYIGKEGFAIPA*EATVDHMGRLMAATEGFPGVQNDKSIIRLDSVVAAIRRDELYISTIGRIFSEDGPPEGKAKIKEGVYVTADDGYHRWLILICPMKYPVNDRVAAWRKRLE*QVRKDVECFFGVLKTRFLILKKAVFYRKNEDIDNVMVTCCILHNMLHAMDG-FDME-----GGNADWDGAHGSCEGRGEIPLE-VSTK--TVSDMAVEVEPGFAAFMEELIEHFMFR 1400
            EL+ +V+    +  WF T   D +GR+ IP++LKVL   Q+LARGNC+ D+  +S+IS   A A F+ F   F  E+Y+  + LP G   +KVM  YD L F+GA GS DV H+ W   PY   + Y GKEG+   A + TVDH  R++A T GF G  NDKSIIR D+ V  IR D +Y      ++  DG P    ++K G Y+  D+GYH+W+ LI P KYP++    A+ KRLE  VRKDVECFFG++K RF ILK ++ Y K EDIDNV  TCCILHNMLH+ D   +ME      GNA   G H + E    + L  V  K  + S   VEVE GF    ++LI  F++R
Sbjct:  129 ELVALVK----QRDWFPTGKQDASGRRGIPVQLKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPY---QLK-GCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLE-SVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNA---GLHNAWEHNPSLDLSSVGAKGSSASTEDVEVESGFNTRRKQLIASFVYR 472          
BLAST of mRNA_H-paniculata_contig1273.1718.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 280 bits (717), Expect = 7.040e-84
Identity = 146/341 (42.82%), Postives = 202/341 (59.24%), Query Frame = 3
Query:  402 WFSTPTTDIAGRQSIPLKLKVLGVRQVLARGNCYDDVTQLSYISESVAIAFFYEFCETFVFELYSSWVSLPDGSALQKVMKHYDSLCFTGAVGSVDVDHVHWDCAPYLHRQLYIGKEGFAIPA*EATVDHMGRLMAATEGFPGVQNDKSIIRLDSVVAAIRRDELYISTIGRIFSEDGPPEGKAKIKEGVYVTADDGYHRWLILICPMKYPVNDRVAAWRKRLE*QVRKDVECFFGVLKTRFLILKKAVFYRKNEDIDNVMVTCCILHNMLHAMDGFDMEGGNADWDGAHGSCEGRGEIP----LEVSTKTVSDMAVEVEPGFAAFMEELIEHFMFRVRRK 1412
            WF T  +D+ GRQ++P++LKVL   Q+L+RGN + D+  +S+IS     + F+ FC+ F  ELY  +V LP G  L+KVM+ YD + F GAVGS DV H++W   PY   ++Y GKEG    A + TVDH GR++A T GF G  NDK+IIR D  V  IR D +Y     +++++DG    +   ++G Y+  D+GYH+W  LI P K P++     + KRLE   RKDVEC+FG+LK RF I K A+ + K E IDNV  TCCILHNMLH+ D         +W G+ G        P      V +      AVEVE GF A   +L+ +F++R  +K
Sbjct:  155 WFPTGESDVTGRQAVPVELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDG----QQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLE-SARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLHNAADRDPNTDYSSVGSMDGQHEAVEVETGFGALRSKLVTNFVYRREKK 490          
BLAST of mRNA_H-paniculata_contig1273.1718.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 257 bits (656), Expect = 5.250e-76
Identity = 140/336 (41.67%), Postives = 193/336 (57.44%), Query Frame = 3
Query:  420 TDIAGRQSIPLK-LKVLGVRQVLARGNCYDDVTQLSYISESVAIAFFYEFCETFVFELYSSWVSLPDGSALQKVMKHYDSLCFTGAVGSVDVDHVHWDCAPYLHRQLYIGKEGFAIPA*EATVDHMGRLMAATEGFPGVQNDKSIIRLDSVVAAIRRDELYISTIGRIFSEDGPPEGKAKIKEGVYVTADDGYHRWLILICPMKYPVNDRVAAWRKRLE*QVRKDVECFFGVLKTRFLILKKAVFYRKNEDIDNVMVTCCILHNMLHAMDGFDMEGGNADWDGAHGSCEGRGEIP----LEVSTKTVSDMAVEVEPGFAAFMEELIEHFMFRVRRK 1412
            TD++ R   P    +VL   Q+L+RGN + D+  +S+IS     + F+ FC+ F  ELY  +V LP G  L+KVM+ YD + F GAVGS DV H++W   PY   ++Y GKEG    A + TVDH GR++A T GF G  NDK+IIR D  V  IR D +Y     +++++DG    +   ++G Y+  D+GYH+W  LI P K P++     + KRLE   RKDVEC+FG+LK RF I K A+ + K E IDNV  TCCILHNMLH+ D         +W G+ G        P      V +      AVEVE GF A   +L+ +F++R  +K
Sbjct:   69 TDLSARCCFPPPHTQVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDG----QQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLE-SARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLHNAADRDPNTDYSSVGSMDGQHEAVEVETGFGALRSKLVTNFVYRREKK 399          
BLAST of mRNA_H-paniculata_contig1273.1718.1 vs. uniprot
Match: A0A6H5K8I3_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8I3_9PHAE)

HSP 1 Score: 252 bits (644), Expect = 1.130e-73
Identity = 149/400 (37.25%), Postives = 218/400 (54.50%), Query Frame = 3
Query:  291 YLTMPWLQVVSSGDFAS--RTRCLKELMK------------VVEGENGKEPWFSTPTTDIAGR---QSIPLKLKVLGVRQVLARGNCYDDVTQLSYISESVAIAFFYEFCETFVFELYSSWVSLPDGSALQKVMKHYDSLCFTGAVGSVDVDHVHWDCAPYLHRQLYIGKEGFAIPA*EATVDHMGRLMAATEGFPGVQNDKSIIRLDSVVAAIRRDELYISTIGRIFSEDGPPEGKAKIKE-GVYVTADDGYHRWLILICPMKYPVNDRVAAWRKRLE*QVRKDVECFFGVLKTRFLILKKAVFYRKNEDIDNVMVTCCILHNMLHAMDGFDMEGGNADWDGAHGSCEGRGEIPL-EVSTKTVSDMAVEVEPGFAAFMEELIEHFMFRVRRKTLKSVRS 1433
            Y T+PW +++   D      TR  K+  +            V E + G  P F+T   ++ GR   + IP++ KVL V ++L RGN +DDV++++ + E+     F++F E F  E++  WV +P+   L+ +MK YD +  +GA+GS+D  H+ W   PY  R  +IGKEG+A       V H  R+++ T GFPG QNDK+II+ D    A+R    Y      +  EDG     A IKE G ++  D GYH W  L  P++ P N   + ++++LE  VRKD EC FGV+K RF I K    YRK E IDN+  TC ILHNML A DG ++   + DW GA G  +   E P+  +S  T  D  VE + GF A  ++L+ +F +R  + T+   RS
Sbjct:   61 YRTLPWARMLEKADLLQDPSTREAKQFRRRFRVPYPFFLSLVDEVKAGNWPGFTTDEFELGGRGTRRCIPVETKVLAVLRILGRGNYFDDVSEVTGMGEATVNHMFHKFTERFACEIFPVWVRMPNEDELKDIMKTYDEVGMSGAMGSMDGTHIEWTLCPYSQRSSHIGKEGYATLVFNVAVSHDMRVLSCTRGFPGAQNDKTIIKFDKFAMAVRNG-WYKDVEYTLKGEDG-----ADIKEKGPWLIVDGGYHNWKQLQSPIRAPSNKAESGFKRQLE-SVRKDSECCFGVVKGRFRICKMQFLYRKKERIDNIFFTCIILHNMLLAYDGIELLEPDCDWAGADGDLDKNIEHPVVRMSAPTHEDAVVECDDGFDALRQKLVTNFAYRWGQGTVGWKRS 453          
BLAST of mRNA_H-paniculata_contig1273.1718.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 250 bits (639), Expect = 2.840e-73
Identity = 136/338 (40.24%), Postives = 185/338 (54.73%), Query Frame = 3
Query:  405 FSTPTTDIAGRQSIPLKLKVLGVRQVLARGNCYDDVTQLSYISESVAIAFFYEFCETFVFELYSSWVSLPDGSALQKVMKHYDSLCFTGAVGSVDVDHVHWDCAPYLHRQLYIGKEGFAIPA*EATVDHMGRLMAATEGFPGVQNDKSIIRLDSVVAAIRRDELYISTIGRIFSEDGPPEGKAKIKEGVYVTADDGYHRWLILICPMKYPVNDRVAAWRKRLE*QVRKDVECFFGVLKTRFLILKKAVFYRKNEDIDNVMVTCCILHNMLHAMDGFDMEGGNADWDGAHGSCEGR-GEIPLEVSTKTVSDMAVEVEPG-----FAAFMEELIEHFMFR 1400
            F T T D+AGRQ +PL+LKVLGV QVL RGNC+ DV QLS +S   A   F+ FC+ F   L+  WV+LP+G  L+KV   Y  +   GAV SVD  H+ W   P+     + GKEG+     EA+ DH GR++++T+GFPG +NDK++++ D  V  +R +E + S    +F      EG      G ++  D GYHR   LICP K   ++    W KR E  +RKD+EC FG LK RF + K  + +   E IDN   T CI+HNMLH  DG      + DW G  G  +   G  P  V T  V     EV+ G     F  F ++L+ H  ++
Sbjct:   94 FPTATRDVAGRQCVPLELKVLGVLQVLGRGNCFADVAQLSLMSRQTAEKSFHRFCDCFSSGLWHQWVTLPEGEVLKKVAGEYGDMGCPGAVASVDCTHISWPACPFSETNTHKGKEGYTTLVYEASCDHSGRILSSTKGFPGAENDKTVVKRDLSVLRMREEEPWASYKFVLFDL----EGNTTEHTGGWLIVDGGYHRVPSLICPFKEYASEAQQEWSKRFE-SIRKDIECLFGRLKGRFRLFKTGILFGTREKIDNAWFTACIIHNMLHQFDGLANLEKDVDWAGKDGEADQTTGAFP--VPTAVVDTAGEEVDDGDNTEAFKLFRQQLVNHVAYK 424          
BLAST of mRNA_H-paniculata_contig1273.1718.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 247 bits (631), Expect = 9.560e-72
Identity = 147/388 (37.89%), Postives = 205/388 (52.84%), Query Frame = 3
Query:  297 TMPWLQVVSSGDFASRTRCLKE------------LMKVVEGENGKEPWFSTPTTDIAGRQSIPLKLKVLGVRQVLARGNCYDDVTQLSYISESVAIAFFYEFCETFVFELYSSWVSLP--DGSALQKVMKHYDSLCFTGAVGSVDVDHVHWDCAPYLHRQLYIGKEGFAIPA*EATVDHMGRLMAATEGFPGVQNDKSIIRLDSVVAAIRRDELYISTIGRIFSEDGPPEGKAKIKEGVYVTADDGYHRWLILICPMKYPVNDRVAAWRKRLE*QVRKDVECFFGVLKTRFLILKKAVFYRKNEDIDNVMVTCCILHNMLHAMDGFDMEGGNADWDGAHG--SCEGRGEIPLEVSTKTVSDMAVEVEPGFAAFMEELIEHFMFRVRRK 1412
            T  W QV+   D    T    +             +++VE    K+ WF+T   D  GR+  P++ KVL    +L RGN +  +  LS++S       F++FCE F  E+Y   + LP  +   L +VM  Y+ L F GA+GS DV H+ W   PY   + Y GKEG      + TV+H GR++A TEGF G  NDK+II  D  V  IR D+ Y      +  +DG  E      +G Y+  D+GYH+W +LI P KYP+++    + KRLE  VRKDVECFFG+LK RF ILK A+ Y+K E +D V  TCCILHNMLH  DG      + +W G+    +  G       V TK ++D   +VE   A    +L  +F++R + K
Sbjct:   62 TCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKD-WFATTQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTE----TLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLE-SVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQNTSGHNLDSSSVGTKDLNDKP-QVEAAHAELKRKLTTNFLYRKKHK 442          
BLAST of mRNA_H-paniculata_contig1273.1718.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 245 bits (625), Expect = 4.560e-71
Identity = 152/396 (38.38%), Postives = 202/396 (51.01%), Query Frame = 3
Query:  330 DFASRTRCLKELMKVVEGENGKEPWFSTPTTDIAGRQSIPLKLKVLGVRQVLARGNCYDDVTQLSYISESVAIAFFYEFCETFVFELYSSWVSLP--DGSALQKVMKHYDSLCFTGAVGSVDVDHVHWDCAPYLHRQLYIGKEGFAIPA*EATVDHMGRLMAATEGFPGVQNDKSIIRLDSVVAAIRRDELYISTIGR----------------------------IFSEDGPPEGKAKIKEGVYVTADDGYHRWLILICPMKYPVNDRVAAWRKRLE*QVRKDVECFFGVLKTRFLILKKAVFYRKNEDIDNVMVTCCILHNMLHAMDGFDMEGGNADWDGAHG-----SCEGRGEIPLEVSTKTVSDMAVEVEPGFAAFMEELIEHFMFRVRRK 1412
            DF         L+ +V+ +N    WFST  TD  G  S P++ KVL    +L RGNC+  + Q+S++S       F++FC  F  E+Y   + LP  +   L  VMK YD L FTGAVGS+DV H+ W   PY   + Y GKEGF   A + TVDH GR +A TEGF G  NDK+I+  D+ V  I  D+ Y                                  +++EDG         +G Y+  D+GYH+W ILI P KYP+++    + KRLE  VRKDVECFFG+LK RF ILK A+ Y+  E IDNV  TC ILHNMLH  DG D    N +W  + G     + E   +    V TK V+D   ++E        +L   F +R + K
Sbjct:   46 DFRVPYTVFLRLVALVKSKN----WFSTAVTDAVGWASHPVEHKVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGT----TTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLE-SVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHNMLHTFDGMDQLVENTNWVSSAGVGATLTTEPEADCG-SVGTKDVNDQP-QLEIEHTVRKRQLTTSFAYRKKHK 430          
BLAST of mRNA_H-paniculata_contig1273.1718.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 242 bits (618), Expect = 1.270e-70
Identity = 130/297 (43.77%), Postives = 172/297 (57.91%), Query Frame = 3
Query:  402 WFSTPTTDIAGRQSIPLKLKVLGVRQVLARGNCYDDVTQLSYISESVAIAFFYEFCETFVFELYSSWVSLPD--GSALQKVMKHYDSLCFTGAVGSVDVDHVHWDCAPYLHRQLYIGKEGFAIPA*EATVDHMGRLMAATEGFPGVQNDKSIIRLDSVVAAIRRDELYISTIGRIFSEDGPPEGKAKIKEGVYVTADDGYHRWLILICPMKYPVNDRVAAWRKRLE*QVRKDVECFFGVLKTRFLILKKAVFYRKNEDIDNVMVTCCILHNMLHAMDGFDMEGGNADWDGAHGSCEG 1286
            WF+T   D A RQS P++ KVL    +L RGNC+  + Q+S++S       F++FC+ F  E+Y   + LP      L  VMK YD L F+GA+GS+DV H+ W   PY   + Y GKEG      + TV+H GR +A TEGF    NDK+ +  D+VV  IR D  Y      +++EDG         +G Y+  D+GYH+W IL+ P KYP+++    + KRLE  VRKDVECFFG+LK  F I K A+ Y + E IDNV  TCCILHNMLH  DG D    N  W  + G+  G
Sbjct:   79 WFTTSGCDAARRQSHPVEHKVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGT----TTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLE-SVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNMLHTFDGMDQLVENTLWVSSAGAGTG 370          
BLAST of mRNA_H-paniculata_contig1273.1718.1 vs. uniprot
Match: A0A6H5L0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H2_9PHAE)

HSP 1 Score: 241 bits (614), Expect = 2.250e-68
Identity = 129/335 (38.51%), Postives = 184/335 (54.93%), Query Frame = 3
Query:  399 PWFSTPTTDIAGRQSIPLKLKVLGVRQVLARGNCYDDVTQLSYISESVAIAFFYEFCETFVFELYSSWVSLPDGSALQKVMKHYDSLCFTGAVGSVDVDHVHWDCAPYLHRQLYIGKEGFAIPA*EATVDHMGRLMAATEGFPGVQNDKSIIRLDSVVAAIRRDELYISTIGRIFSEDGPPEGKAKIKEGVYVTADDGYHRWLILICPMKYPVNDRVAAWRKRLE*QVRKDVECFFGVLKTRFLILKKAVFYRKNEDIDNVMVTCCILHNMLHAMDGFDMEGGNADWDGAHGSCEGR-GEIPLEVSTKTVSD-MAVEVEPGFAAFMEELIEHFMF 1397
            P F     D+ GR  +PL+LKVLGV QVL RGNC+ DV   S +S + A   F+ FC  F   L+ +W+ LP+G  L++V   Y SL + GAVGS+D  HV W+   +     + GKEG+     EA  DH GR++A+T+G+PG +NDK++++ D  V  +  +E ++S    ++ E G          G ++ AD GYHR  +LICP K   N     W KRLE  VRKD+EC FG LK RF + K  + +     ID+   T CI+HNML A DG D    + DW+G  G  +   G  P      +  D ++ + +  F A  + L++HF F
Sbjct:  190 PVFPAREHDVCGRLCVPLELKVLGVLQVLGRGNCFADVANFSLMSRTTAEQSFHRFCHCFAAGLWRTWIRLPEGEGLRRVESTYRSLGYPGAVGSIDCTHVPWERCAFSETTTHKGKEGYTTVVFEAICDHAGRILASTKGYPGAENDKTVVQRDLSVRRVEGEEPWVSYKYEMYDETGDVTEHT----GGWLIADGGYHRVPLLICPFKVYANVAEQQWSKRLE-SVRKDIECLFGRLKGRFRLFKTGILFGDRTKIDDAWFTACIIHNMLLAFDGLDQLEVDMDWEGKDGEADSTTGVFPAVTVADSAEDKVSGDDDAAFHAHRQCLVDHFAF 519          
BLAST of mRNA_H-paniculata_contig1273.1718.1 vs. uniprot
Match: A0A6H5JHC3_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC3_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 2.090e-62
Identity = 131/363 (36.09%), Postives = 192/363 (52.89%), Query Frame = 3
Query:  360 ELMKVVEGENGKEPWFSTPTTDIAGRQS---IPLKLKVLGVRQVLARGNCYDDVTQLSYISESVAIAFFYEFCETFVFELYSSWVSLPDGSALQKVMKHYDSLCFTGAVGSVDVDHVHWDCAPYLHRQLYIGKEGFAIPA*EATVDHMGRLMAATEGFPGVQNDKSIIRLDSVVAAIRRD--ELYISTIGRIFSEDGPPEGKAKIKEGVYVTADDGYHRWLILICPMKYPVNDRVAAWRKRLE*QVRKDVECFFGVLKTRFLILKKAVFYRKNEDIDNVMVTCCILHNMLHAMDGFDMEGGNADWDGAHGSCEGRGEIPLEVSTKTVSDMAVEVEPGFAAFMEELIEHFMFRVRRKTLKSVRS 1433
            EL+K ++    K   F+T  TD+ GR +   IP++LKVLG      RGN +DD+ QLS+ISE      F+EF + F  E +   V  P G+ L+++++ Y  + F G  GS+D  H+H+  AP   R  Y+GKEGFA  A E   DH  R +  ++ FPG  NDK+I+  D  V  I+ +  ++  + +G         +G    + G+Y+  D GYH+     CP+++PV     A+RK+LE  VRKD+ECFFG+LK RF ILK  + YR    +D +  TCC LHNMLH+ DG  +   + +W GA G  +     P   S    S      E  F     +L+ +     +R T+   RS
Sbjct:  104 ELVKEIKSAGWKG--FTTDATDLGGRGTRPCIPVELKVLG------RGNFFDDIPQLSFISEQTIQRVFHEFTQRFALEFFPKHVKFPQGAHLEEILREYKDVGFGGCAGSMDCTHIHYQSAPNSGRHSYVGKEGFATVAFEVVCDHKLRCLGVSKAFPGAMNDKTIVMFDEYVRRIKTECKDVPFTLLGE--------DGSEFEERGLYLIVDGGYHK-----CPVQFPVTQDELAFRKQLE-SVRKDIECFFGILKGRFRILKMPLLYRGIHKLDCIFQTCCALHNMLHSYDGLSLLEKDCEWAGADGDLDPWVTTPEAESAADNSPDLHLFEDDFKDLQGKLVTNLAEMKKRGTVGWRRS 444          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1273.1718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAU4_9PHAE1.680e-8445.22Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE7.040e-8442.82Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY50_9PHAE5.250e-7641.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8I3_9PHAE1.130e-7337.25Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV45_9PHAE2.840e-7340.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBE2_9PHAE9.560e-7237.89Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE4.560e-7138.38DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JHI0_9PHAE1.270e-7043.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0H2_9PHAE2.250e-6838.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHC3_9PHAE2.090e-6236.09DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1273contigH-paniculata_contig1273:9446..12123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1839
Cds size543
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1273.1718.1prot_H-paniculata_contig1273.1718.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1273 9676..10688 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928995.9027634-UTR-H-paniculata_contig1273:9445..96751622928995.9027634-UTR-H-paniculata_contig1273:9445..9675Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1273 9446..9675 +
1691480695.1714902-UTR-H-paniculata_contig1273:9445..96751691480695.1714902-UTR-H-paniculata_contig1273:9445..9675Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1273 9446..9675 +
1622928995.9681914-UTR-H-paniculata_contig1273:10688..109161622928995.9681914-UTR-H-paniculata_contig1273:10688..10916Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1273 10689..10916 +
1691480695.1939032-UTR-H-paniculata_contig1273:10688..109161691480695.1939032-UTR-H-paniculata_contig1273:10688..10916Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1273 10689..10916 +
1622928995.986461-UTR-H-paniculata_contig1273:11285..121231622928995.986461-UTR-H-paniculata_contig1273:11285..12123Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1273 11286..12123 +
1691480695.2016923-UTR-H-paniculata_contig1273:11285..121231691480695.2016923-UTR-H-paniculata_contig1273:11285..12123Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1273 11286..12123 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928995.9161363-CDS-H-paniculata_contig1273:9675..99061622928995.9161363-CDS-H-paniculata_contig1273:9675..9906Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1273 9676..9906 +
1691480695.1792297-CDS-H-paniculata_contig1273:9675..99061691480695.1792297-CDS-H-paniculata_contig1273:9675..9906Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1273 9676..9906 +
1622928995.9316585-CDS-H-paniculata_contig1273:10376..106881622928995.9316585-CDS-H-paniculata_contig1273:10376..10688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1273 10377..10688 +
1691480695.1864305-CDS-H-paniculata_contig1273:10376..106881691480695.1864305-CDS-H-paniculata_contig1273:10376..10688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1273 10377..10688 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1273.1718.1

>prot_H-paniculata_contig1273.1718.1 ID=prot_H-paniculata_contig1273.1718.1|Name=mRNA_H-paniculata_contig1273.1718.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=181bp
MRDQTTSSQLGGGCSRKSICYLTMPWLQVVSSGDFASRTRCLKELMKVVE
GENGKEPWFSTPTTDIAGRQSIPLKLKVLGVRQVLARGNCYDDVTQLSYI
SESVAIAFFYEFCETFVFELYSSWVSLPDGSALQKVMKHYDSLCFTGAVG
SVDVDHVHWDCAPYLHRQLYIGKEGFAIPA*
back to top

mRNA from alignment at H-paniculata_contig1273:9446..12123+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1273.1718.1 ID=mRNA_H-paniculata_contig1273.1718.1|Name=mRNA_H-paniculata_contig1273.1718.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2678bp|location=Sequence derived from alignment at H-paniculata_contig1273:9446..12123+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACACCCTGTCCGTGATAATGCCAGTGAGGAAGGATAAGTACAAATTTCCC GACGACGAGGACGAAATGCTGCTGACTGTATGCCAAGCACAGCTAAACGA GTTCCACGCGATAGGTGCAGCTGCGCAACTGTTTCTGAACGACCTCGCGG CGGCGGTGTAGTTTTTAAACCCGGACGGCGGTGGAGGTTGTGACTACTAC TCGCCCAAGAGGAGTTAGCGCGGTTGGTGTATGAGAGACCAGACTACGAG CAGTCAGCTCGGGGGCGGATGCTCGCGCAAGAGCATCTGCTACTTAACGA TGCCCTGGCTGCAAGTCGTTTCAAGCGGCGATTTCGCATCCCGTACCCGA TGTTTAAAGGAGCTCATGAAGGTGGTGGAGGGCGAGAACGGCAAGGAGCC GTGGTTCTCTACGCCGACGACGGACATAGCCGGCCGCCAAAGCATCCCCC TGAAGCTGAAGGTGTGTACCGTAGTCTTGAGGGTGTACGTTGAGGGCGCT GTATCCAACACCAAGTATATTGCAGATAGACCGTACACTCCGTAACACAG TACACAGTACAAGCTGTACGTACTATACATGATGCAGCCAATACAATACA GTACAGAGTAGTATAGCATGTAAGTCCGTACAGGACTGTGCCGTACTTTA GAGTCAGCACCTCGCCCAGAACTGTAGGCGAAGATGTTGACTACACTATT CCTGCGAGTGTGGCTCTAATGCACCCAACCAGCGCAGCGGCGGCCTGCGA GCGTTAGGTGGTCGACGCGTGTAGCTTCTTCCTCATATACGATGCTCCGT GGTGGCGTGGAGTTTAGGCATTGCCCGTGTTTGCAGCGTCTTGCTCGAGG CGGTTCAATGCCAGCCTCTCATATTATTCTCTTGTTGCCTGTCTGCTTAT TTCCATGCGCCGTGATTTGCCCGCTTCGAAGGTGCTGGGAGTGCGACAGG TATTGGCGAGGGGCAACTGCTACGACGACGTGACCCAGCTGTCGTACATT AGCGAATCGGTGGCGATTGCGTTCTTCTATGAGTTCTGCGAAACGTTCGT GTTCGAGCTGTACAGTAGCTGGGTCTCGCTGCCGGACGGATCGGCTCTGC AGAAGGTGATGAAGCACTACGACTCTCTCTGCTTCACGGGTGCGGTGGGC TCAGTGGATGTTGATCACGTGCACTGGGACTGCGCCCCGTACTTACACCG GCAGCTATATATCGGGAAGGAGGGTTTCGCGATCCCTGCATAAGAGGCAA CAGTGGATCACATGGGCCGACTGATGGCCGCCACGGAGGGGTTCCCGGGA GTCCAGAACGACAAGAGCATAATCAGATTGGACTCGGTCGTCGCGGCTAT CCGACGTGACGAACTTTACATCTCAACGATAGGCAGGATTTTCAGCGAGG ATGGTCCACCCGAGGGCAAGGCGAAGATTAAGGAGGGTGTCTACGTCACC GCCGACGACGGCTACCACCGGGTAAGAGAGTGCACTTGTGAAACTGTGAA TGTGTGCGGGTGCTTGTGTGCGTGTGTAACGGCAGGTGGTTGCACTACCG ACACCGCGATGGTGAGAAGAAATCACTACTAGGACCAGATGTCCTAAATG CGGCGTCGGTGATGGCGTATATGGAGGTGGTGCGGTGTGGTACTGACCCC ATCCAATGTGTGTGTAAGATGATACCGCAAAATTCTATTTCCGTTATGCT TTCATGATACAGCGAAGGCTGGGCGCACGTGTAGCTGGTGCACCACATGA ACTCATGAAACATGTTGATGGACTTACCGGTCATTATTTACAACAGATTC ATCCCTCCGTTGACCGTGGCGCTATCCTTGGTTGTCTCAGTGGTTGATAT TAATATGCCCCATGAAGTACCCGGTCAACGACCGCGTCGCGGCTTGGAGA AAGCGACTGGAGTAGCAGGTTCGCAAGGATGTGGAGTGCTTCTTCGGCGT ACTGAAGACCCGCTTCCTGATCCTCAAGAAGGCAGTCTTCTACCGCAAGA ACGAAGACATCGACAACGTGATGGTCACGTGTTGCATACTCCACAACATG CTGCACGCAATGGACGGCTTCGACATGGAGGGGGGAAATGCCGACTGGGA CGGGGCCCACGGGAGCTGCGAGGGTCGCGGCGAAATTCCCCTAGAGGTGT CGACGAAGACAGTGTCTGACATGGCTGTAGAGGTAGAGCCGGGGTTCGCT GCCTTCATGGAGGAGCTTATTGAACACTTCATGTTCAGGGTGAGGCGGAA GACGCTCAAGTCGGTTCGGTCGTGATTGATGCCGAGATTCGCCTGGGCGC ACTGTTGGTGTCGTGGGTGGTGCGCTCTCAATATATATATGCACCTGTCT TATTCTGTTATCATAGTTGTAGCTTTCATTGTATCTTTTTGTAATACTCT TTGGCTCCAGCGAGCATTATTGGTTGCAACCTGCACTATTCTGTTTTTAT ACTCGTAGTCTTCAGTGTCTCTTTTTTTAGTACTCTTTGGCTGCAGCGAG GATTATTTTTTACCACCTATATTACTCTGTTTTATACTCTTTGGCTGCAG CGAGCAGTATTTGTTGCCACATCGGCCCGGCGGGTGTCGTTTACACCTCA AACGGCGTAGCCTGTATTTTTCGCGCCTGAAAACGGACCTAGGGGGCGGG GGCAGGGAAAAACTACTTGACCGCACAT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1273:9446..12123+

>mRNA_H-paniculata_contig1273.1718.1 ID=mRNA_H-paniculata_contig1273.1718.1|Name=mRNA_H-paniculata_contig1273.1718.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1086bp|location=Sequence derived from alignment at H-paniculata_contig1273:9446..12123+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGAGACCAGACTACGAGCAGTCAGCTCGGGGGCGGATGCTCGCGCAA
GAGCATCTGCTACTTAACGATGCCCTGGCTGCAAGTCGTTTCAAGCGGCG
ATTTCGCATCCCGTACCCGATGTTTAAAGGAGCTCATGAAGGTGGTGGAG
GGCGAGAACGGCAAGGAGCCGTGGTTCTCTACGCCGACGACGGACATAGC
CGGCCGCCAAAGCATCCCCCTGAAGCTGAAGATGAGAGACCAGACTACGA
GCAGTCAGCTCGGGGGCGGATGCTCGCGCAAGAGCATCTGCTACTTAACG
ATGCCCTGGCTGCAAGTCGTTTCAAGCGGCGATTTCGCATCCCGTACCCG
ATGTTTAAAGGAGCTCATGAAGGTGGTGGAGGGCGAGAACGGCAAGGAGC
CGTGGTTCTCTACGCCGACGACGGACATAGCCGGCCGCCAAAGCATCCCC
CTGAAGCTGAAGGTGCTGGGAGTGCGACAGGTATTGGCGAGGGGCAACTG
CTACGACGACGTGACCCAGCTGTCGTACATTAGCGAATCGGTGGCGATTG
CGTTCTTCTATGAGTTCTGCGAAACGTTCGTGTTCGAGCTGTACAGTAGC
TGGGTCTCGCTGCCGGACGGATCGGCTCTGCAGAAGGTGATGAAGCACTA
CGACTCTCTCTGCTTCACGGGTGCGGTGGGCTCAGTGGATGTTGATCACG
TGCACTGGGACTGCGCCCCGTACTTACACCGGCAGCTATATATCGGGAAG
GAGGGTTTCGCGATCCCTGCATAAGTGCTGGGAGTGCGACAGGTATTGGC
GAGGGGCAACTGCTACGACGACGTGACCCAGCTGTCGTACATTAGCGAAT
CGGTGGCGATTGCGTTCTTCTATGAGTTCTGCGAAACGTTCGTGTTCGAG
CTGTACAGTAGCTGGGTCTCGCTGCCGGACGGATCGGCTCTGCAGAAGGT
GATGAAGCACTACGACTCTCTCTGCTTCACGGGTGCGGTGGGCTCAGTGG
ATGTTGATCACGTGCACTGGGACTGCGCCCCGTACTTACACCGGCAGCTA
TATATCGGGAAGGAGGGTTTCGCGATCCCTGCATAA
back to top