mRNA_H-paniculata_contig1273.1716.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1273.1716.1
Unique NamemRNA_H-paniculata_contig1273.1716.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1273.1716.1 vs. uniprot
Match: A0A835ZPD2_9STRA (IMP dehydrogenase/GMP reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPD2_9STRA)

HSP 1 Score: 119 bits (299), Expect = 6.240e-30
Identity = 62/79 (78.48%), Postives = 67/79 (84.81%), Query Frame = 1 
Query:    7 LQVRAVGRAQISAVYHVGKLARAYGVPVIADGGITNTGCGIKALALGASVLMMGSLLAGTEEAPGEYFYQRGMRLKHYQ 243
            L VRAVGRAQISAVY+V KLA   GVPVIADGGI NTGC  KAL+LGASV+MMG +LA TEEAPG YFYQ G+RLKHYQ
Sbjct:  352 LFVRAVGRAQISAVYYVSKLAAERGVPVIADGGIMNTGCATKALSLGASVVMMGGMLAATEEAPGAYFYQDGVRLKHYQ 430
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BLAST of mRNA_H-paniculata_contig1273.1716.1 vs. uniprot
Match: A0A835ZCF6_9STRA (IMP dehydrogenase/GMP reductase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCF6_9STRA)

HSP 1 Score: 117 bits (294), Expect = 3.200e-29
Identity = 57/78 (73.08%), Postives = 67/78 (85.90%), Query Frame = 1 
Query:    7 LQVRAVGRAQISAVYHVGKLARAYGVPVIADGGITNTGCGIKALALGASVLMMGSLLAGTEEAPGEYFYQRGMRLKHY 240
            + VRAVGRAQISAVY+V +LA   G+PVIADGGI NTGC  KAL+LGASV+MMG +LA TEEAPG+YFYQ G+R+KHY
Sbjct:  353 IHVRAVGRAQISAVYYVSRLAAEQGIPVIADGGIMNTGCATKALSLGASVVMMGGMLAATEEAPGDYFYQDGVRMKHY 430
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BLAST of mRNA_H-paniculata_contig1273.1716.1 vs. uniprot
Match: A0A6V1RUF0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RUF0_HETAK)

HSP 1 Score: 115 bits (289), Expect = 1.430e-28
Identity = 55/77 (71.43%), Postives = 65/77 (84.42%), Query Frame = 1 
Query:   13 VRAVGRAQISAVYHVGKLARAYGVPVIADGGITNTGCGIKALALGASVLMMGSLLAGTEEAPGEYFYQRGMRLKHYQ 243
            V+AVGRAQISA+YH  KL R +GVP++ADGGITN GC  KALA+GAS +MMGSLLAG EE+PG+YF+  G RLKHYQ
Sbjct:  340 VKAVGRAQISAIYHCAKLGRKHGVPIVADGGITNPGCTTKALAMGASAVMMGSLLAGVEESPGDYFFADGKRLKHYQ 416
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BLAST of mRNA_H-paniculata_contig1273.1716.1 vs. uniprot
Match: A0A7S0XGM5_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XGM5_9STRA)

HSP 1 Score: 114 bits (284), Expect = 7.670e-28
Identity = 53/76 (69.74%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:   13 VRAVGRAQISAVYHVGKLARAYGVPVIADGGITNTGCGIKALALGASVLMMGSLLAGTEEAPGEYFYQRGMRLKHY 240
            V+AVGR Q+SA+YH  K+AR YGVP +ADGG+ NTGC IKALA+GAS ++MGSLLAG +E+PGEYF+Q G+RLKHY
Sbjct:  346 VKAVGRPQLSALYHCAKIAREYGVPALADGGVKNTGCVIKALAVGASCVIMGSLLAGVDESPGEYFFQDGVRLKHY 421
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BLAST of mRNA_H-paniculata_contig1273.1716.1 vs. uniprot
Match: A0A7S2RJY9_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJY9_9STRA)

HSP 1 Score: 114 bits (284), Expect = 8.510e-28
Identity = 56/77 (72.73%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:   10 QVRAVGRAQISAVYHVGKLARAYGVPVIADGGITNTGCGIKALALGASVLMMGSLLAGTEEAPGEYFYQRGMRLKHY 240
            QV+A GRAQ+SA+YH   LAR Y VPVIADGGI NTGC IKAL +GAS +MMGSLLAG EE+PGEY++Q GMRLK Y
Sbjct:  372 QVKAGGRAQLSAIYHSALLARKYDVPVIADGGIANTGCAIKALTMGASCVMMGSLLAGVEESPGEYYFQDGMRLKRY 448
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BLAST of mRNA_H-paniculata_contig1273.1716.1 vs. uniprot
Match: K3WPY9_GLOUD (Inosine-5'-monophosphate dehydrogenase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WPY9_GLOUD)

HSP 1 Score: 113 bits (283), Expect = 8.870e-28
Identity = 56/76 (73.68%), Postives = 65/76 (85.53%), Query Frame = 1 
Query:   13 VRAVGRAQISAVYHVGKLARAYGVPVIADGGITNTGCGIKALALGASVLMMGSLLAGTEEAPGEYFYQRGMRLKHY 240
            V+AVGRAQ+SA+Y+    ARAYGVPVIADGGI+N+GC IKALALGAS +MMGS LAGT EAPG+YF+Q G RLK Y
Sbjct:  324 VKAVGRAQLSAIYNTALAARAYGVPVIADGGISNSGCAIKALALGASCVMMGSSLAGTSEAPGDYFFQDGQRLKRY 399
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BLAST of mRNA_H-paniculata_contig1273.1716.1 vs. uniprot
Match: A0A662Y8C6_9STRA (IMPDH domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y8C6_9STRA)

HSP 1 Score: 108 bits (269), Expect = 8.960e-28
Identity = 53/76 (69.74%), Postives = 64/76 (84.21%), Query Frame = 1 
Query:   13 VRAVGRAQISAVYHVGKLARAYGVPVIADGGITNTGCGIKALALGASVLMMGSLLAGTEEAPGEYFYQRGMRLKHY 240
            V+AVGRAQ+SA+Y+   +A+ YGVPVIADGGI N+GC IKAL LGAS +MMGS LAGT EAPG+YF+Q G+RLK Y
Sbjct:   63 VKAVGRAQLSAIYNTALVAKDYGVPVIADGGIGNSGCAIKALTLGASCVMMGSSLAGTAEAPGDYFFQDGIRLKQY 138
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BLAST of mRNA_H-paniculata_contig1273.1716.1 vs. uniprot
Match: A0A2R5GGC7_9STRA (Inosine-5'-monophosphate dehydrogenase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GGC7_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.910e-27
Identity = 52/76 (68.42%), Postives = 68/76 (89.47%), Query Frame = 1 
Query:   13 VRAVGRAQISAVYHVGKLARAYGVPVIADGGITNTGCGIKALALGASVLMMGSLLAGTEEAPGEYFYQRGMRLKHY 240
            V+AVGR Q+SAV+HV ++A ++G+PVIADGGI N+GC IKAL+LGAS +MMGSLLAGTEE+PG+Y++Q G+RLK Y
Sbjct:  341 VKAVGRPQMSAVFHVSRIAHSHGIPVIADGGIANSGCAIKALSLGASTVMMGSLLAGTEESPGQYYFQDGLRLKKY 416
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BLAST of mRNA_H-paniculata_contig1273.1716.1 vs. uniprot
Match: A0A7R9WK95_9STRA (Hypothetical protein n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WK95_9STRA)

HSP 1 Score: 107 bits (268), Expect = 6.520e-27
Identity = 55/77 (71.43%), Postives = 63/77 (81.82%), Query Frame = 1 
Query:   10 QVRAVGRAQISAVYHVGKLARAYGVPVIADGGITNTGCGIKALALGASVLMMGSLLAGTEEAPGEYFYQRGMRLKHY 240
            +V AVGRAQ SAVYHV K AR +GVPV+ADGGI +TG   KAL  GAS +MMGS+LAGT+EAPGEYFYQ G+RLK Y
Sbjct:   81 EVCAVGRAQASAVYHVSKYARKHGVPVVADGGIKSTGHITKALCFGASAVMMGSMLAGTDEAPGEYFYQDGVRLKRY 157
[Close]
BLAST of mRNA_H-paniculata_contig1273.1716.1 vs. uniprot
Match: A0A7S2Y056_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y056_9STRA)

HSP 1 Score: 111 bits (277), Expect = 7.350e-27
Identity = 53/76 (69.74%), Postives = 65/76 (85.53%), Query Frame = 1 
Query:   13 VRAVGRAQISAVYHVGKLARAYGVPVIADGGITNTGCGIKALALGASVLMMGSLLAGTEEAPGEYFYQRGMRLKHY 240
            ++AVGRAQ+S++Y++ KLA  +GVPVIADGGITN G   KAL +GASV+MMG LLAG EE+PGEYF+Q GMRLKHY
Sbjct:  337 MKAVGRAQLSSIYYISKLANQHGVPVIADGGITNPGSTTKALTMGASVVMMGGLLAGVEESPGEYFFQDGMRLKHY 412
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1273.1716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZPD2_9STRA6.240e-3078.48IMP dehydrogenase/GMP reductase n=1 Tax=Tribonema ... [more]
A0A835ZCF6_9STRA3.200e-2973.08IMP dehydrogenase/GMP reductase (Fragment) n=1 Tax... [more]
A0A6V1RUF0_HETAK1.430e-2871.43Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0XGM5_9STRA7.670e-2869.74Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S2RJY9_9STRA8.510e-2872.73Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
K3WPY9_GLOUD8.870e-2873.68Inosine-5'-monophosphate dehydrogenase n=1 Tax=Glo... [more]
A0A662Y8C6_9STRA8.960e-2869.74IMPDH domain-containing protein (Fragment) n=1 Tax... [more]
A0A2R5GGC7_9STRA1.910e-2768.42Inosine-5'-monophosphate dehydrogenase n=1 Tax=Hon... [more]
A0A7R9WK95_9STRA6.520e-2771.43Hypothetical protein n=2 Tax=Pseudictyota dubia Ta... [more]
A0A7S2Y056_9STRA7.350e-2769.74Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1273contigH-paniculata_contig1273:269..511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.0
Seed ortholog evalue3.3e-23
Seed eggNOG ortholog65071.PYU1_T007031
Preferred nameIMPDH2
KEGG rclassRC00143,RC02207
KEGG koko:K00088
KEGG ReactionR01130,R08240
KEGG Pathwayko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110
KEGG ModuleM00050
Hectar predicted targeting categorymitochondrion
GOsGO:0000166,GO:0000323,GO:0000785,GO:0000902,GO:0000904,GO:0001654,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003723,GO:0003729,GO:0003824,GO:0003938,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005764,GO:0005766,GO:0005773,GO:0005775,GO:0005829,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006183,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006887,GO:0006928,GO:0006935,GO:0006950,GO:0006955,GO:0007154,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007423,GO:0007623,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009266,GO:0009267,GO:0009409,GO:0009605,GO:0009607,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009735,GO:0009987,GO:0009991,GO:0010033,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0022008,GO:0022607,GO:0030030,GO:0030141,GO:0030154,GO:0030182,GO:0030447,GO:0031175,GO:0031347,GO:0031349,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031982,GO:0031983,GO:0032501,GO:0032502,GO:0032940,GO:0032943,GO:0032989,GO:0032990,GO:0033554,GO:0034097,GO:0034404,GO:0034641,GO:0034654,GO:0034774,GO:0035578,GO:0035690,GO:0035821,GO:0036094,GO:0036170,GO:0036180,GO:0036230,GO:0040007,GO:0040011,GO:0042119,GO:0042221,GO:0042278,GO:0042330,GO:0042451,GO:0042455,GO:0042493,GO:0042582,GO:0042594,GO:0043010,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0043473,GO:0043933,GO:0044003,GO:0044085,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044403,GO:0044416,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046039,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0046649,GO:0046651,GO:0046903,GO:0048066,GO:0048468,GO:0048511,GO:0048513,GO:0048518,GO:0048583,GO:0048584,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0051817,GO:0052031,GO:0052173,GO:0052200,GO:0052251,GO:0052255,GO:0052509,GO:0052510,GO:0055086,GO:0055114,GO:0060041,GO:0060205,GO:0061564,GO:0065003,GO:0065007,GO:0070013,GO:0070661,GO:0070670,GO:0070887,GO:0071310,GO:0071345,GO:0071353,GO:0071496,GO:0071704,GO:0071840,GO:0071944,GO:0072521,GO:0072522,GO:0075136,GO:0080134,GO:0090407,GO:0097159,GO:0097485,GO:0097708,GO:0099503,GO:0101002,GO:0120036,GO:0120039,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659,GO:1904813
EggNOG free text desc.Inosine-5'-monophosphate dehydrogenase. Source PGD
EggNOG OGs1METT@121069,COG0516@1,KOG2550@2759
EC1.1.1.205
COG Functional cat.F
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Exons1
Model size243
Cds size243
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928995.86223-CDS-H-paniculata_contig1273:268..5111622928995.86223-CDS-H-paniculata_contig1273:268..511Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1273 269..511 +
1691480695.1567-CDS-H-paniculata_contig1273:268..5111691480695.1567-CDS-H-paniculata_contig1273:268..511Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1273 269..511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1273.1716.1prot_H-paniculata_contig1273.1716.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1273 269..511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1273.1716.1

>prot_H-paniculata_contig1273.1716.1 ID=prot_H-paniculata_contig1273.1716.1|Name=mRNA_H-paniculata_contig1273.1716.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp
MFLQVRAVGRAQISAVYHVGKLARAYGVPVIADGGITNTGCGIKALALGA
SVLMMGSLLAGTEEAPGEYFYQRGMRLKHYQ
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mRNA from alignment at H-paniculata_contig1273:269..511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1273.1716.1 ID=mRNA_H-paniculata_contig1273.1716.1|Name=mRNA_H-paniculata_contig1273.1716.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=243bp|location=Sequence derived from alignment at H-paniculata_contig1273:269..511+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTTTACAGGTACGCGCAGTAGGTCGAGCTCAGATTTCGGCCGTGTA
CCACGTGGGCAAGCTGGCGCGAGCTTACGGAGTTCCTGTGATTGCCGACG
GAGGCATCACGAACACGGGGTGTGGGATCAAGGCACTGGCACTTGGTGCT
AGCGTGCTGATGATGGGCTCGCTGCTGGCCGGCACGGAAGAGGCTCCTGG
GGAATACTTTTACCAACGTGGCATGCGTCTCAAACATTACCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1273:269..511+

>mRNA_H-paniculata_contig1273.1716.1 ID=mRNA_H-paniculata_contig1273.1716.1|Name=mRNA_H-paniculata_contig1273.1716.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at H-paniculata_contig1273:269..511+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTTTACAGGTACGCGCAGTAGGTCGAGCTCAGATTTCGGCCGTGTA
CCACGTGGGCAAGCTGGCGCGAGCTTACGGAGTTCCTGTGATTGCCGACG
GAGGCATCACGAACACGGGGTGTGGGATCAAGGCACTGGCACTTGGTGCT
AGCGTGCTGATGATGGGCTCGCTGCTGGCCGGCACGGAAGAGGCTCCTGG
GGAATACTTTTACCAACGTGGCATGCGTCTCAAACATTACCAGATGTTTT
TACAGGTACGCGCAGTAGGTCGAGCTCAGATTTCGGCCGTGTACCACGTG
GGCAAGCTGGCGCGAGCTTACGGAGTTCCTGTGATTGCCGACGGAGGCAT
CACGAACACGGGGTGTGGGATCAAGGCACTGGCACTTGGTGCTAGCGTGC
TGATGATGGGCTCGCTGCTGGCCGGCACGGAAGAGGCTCCTGGGGAATAC
TTTTACCAACGTGGCATGCGTCTCAAACATTACCAG
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