prot_H-paniculata_contig9415.17175.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig9415.17175.1
Unique Nameprot_H-paniculata_contig9415.17175.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length178
Homology
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BLAST of mRNA_H-paniculata_contig9415.17175.1 vs. uniprot
Match: A0A6H5JRV5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV5_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 5.960e-26
Identity = 55/91 (60.44%), Postives = 64/91 (70.33%), Query Frame = 0 
Query:   55 LPDNELEALTRLHVEDIDCSLTVRPTRTAFDLTFFEEISYSFEIVSAQLTRPPKRPPDS----CRKKCGDKSLETCSCGEKGNGPGRPKQL 141
            +PDNELEA   LHVEDIDCSL VRPTRTA DL FF E+SYSFEIV+A+L RPPKRPPD+    CR KC     + C C    + P R ++L
Sbjct:    1 MPDNELEAAKGLHVEDIDCSLVVRPTRTALDLRFFGEVSYSFEIVAARLVRPPKRPPDARSGRCRNKCSPG--KACPCNR--DSPARSRRL 87
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BLAST of mRNA_H-paniculata_contig9415.17175.1 vs. uniprot
Match: D8LC33_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC33_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 2.140e-23
Identity = 55/91 (60.44%), Postives = 64/91 (70.33%), Query Frame = 0 
Query:   55 LPDNELEALTRLHVEDIDCSLTVRPTRTAFDLTFFEEISYSFEIVSAQLTRPPKRPPDS----CRKKCGDKSLETCSCGEKGNGPGRPKQL 141
            +PDNELEA   LHVEDIDCSL VRPTRTA DL FF E+SYSFEIV+A+L RPPKRPPD+    CR KC     + C C    + P R ++L
Sbjct:    1 MPDNELEAAKGLHVEDIDCSLVVRPTRTALDLRFFGEVSYSFEIVAARLVRPPKRPPDARSGRCRNKCSPG--KACPCNH--DSPARSRRL 87
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9415.17175.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JRV5_9PHAE5.960e-2660.44Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LC33_ECTSI2.140e-2360.44RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 165..178
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 21..38
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 39..178
NoneNo IPR availableTMHMMTMhelixcoord: 21..38

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9415contigH-paniculata_contig9415:4834..9510 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9415.17175.1mRNA_H-paniculata_contig9415.17175.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig9415 4808..9510 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig9415.17175.1 ID=prot_H-paniculata_contig9415.17175.1|Name=mRNA_H-paniculata_contig9415.17175.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=178bp
MMEVIEKTQRKVVVRQKRHGVLYGVGACFLLALLFYLLDGKHPKSSLYCT
RHAVLPDNELEALTRLHVEDIDCSLTVRPTRTAFDLTFFEEISYSFEIVS
AQLTRPPKRPPDSCRKKCGDKSLETCSCGEKGNGPGRPKQLNRRNFQGLY
ESGEAGGEGSSGAPKRRDARALEEEEEE
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