mRNA_H-paniculata_contig9413.17174.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9413.17174.1 vs. uniprot
Match: D8LMN7_ECTSI (C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMN7_ECTSI) HSP 1 Score: 158 bits (399), Expect = 1.160e-37 Identity = 119/261 (45.59%), Postives = 143/261 (54.79%), Query Frame = 2 Query: 2 VTLYQAQNLKKVQLIGKQDPYVRAKLMYQDQKISEARSSTDTDANCNPNWTRQPKHVFTFFVPATVLLTDLKLVLEVHNDNLLADALIGTTGLISVDKVDDGEPRWWNVSGGGTLQAAVKLISDQGASSAPSASXXXXXGSRVXXXXXXXXXXXXXXXXXXXXXXXVQ----APAAPVPAPVPVVPGQPAPTSYG--THVQASMHDPPPYTAYATPAVAPGASSGSSAGQYRPPPVAPGAAAA--TPYAPANYSNTKDAYG 760
V + QAQNLKKVQ+IGKQDPYVRAKL++ KI E RSST TD NP W + VFTF+VPATV L L +VL+V NDNL+AD++IGTTG I + GE +WWNVS GGTLQA ++LI+ + + SR XXXXXX V +P V PV G P +YG T V +M DPPP + AVA YRPPPVAPGAA A P+ A Y + YG
Sbjct: 172 VRVCQAQNLKKVQMIGKQDPYVRAKLLFNGHKIGECRSSTHTDGGRNPTWQNMARSVFTFYVPATVTLETLAVVLDVVNDNLVADSIIGTTGSIGLKTAATGESKWWNVSSGGTLQAIIELITPESGGXXXXXTHPNIAYSRSXXXXXXPAVASSRPSGGSYNGGRVATVNPSPHVAVAHATPVAAGAPG-NAYGGATPVATAMSDPPPSYEQSHVAVA---------SSYRPPPVAPGAAPAPAVPHGGAAYEKSNQ-YG 421
BLAST of mRNA_H-paniculata_contig9413.17174.1 vs. uniprot
Match: A0A6H5JZ55_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ55_9PHAE) HSP 1 Score: 151 bits (382), Expect = 6.070e-35 Identity = 114/271 (42.07%), Postives = 145/271 (53.51%), Query Frame = 2 Query: 2 VTLYQAQNLKKVQLIGKQDPYVRAKLMYQDQKISEARSSTDTDANCNPNWTRQPKHVFTFFVPATVLLTDLKLVLEVHNDNLLADALIGTTGLISVDKVDDGEPRWWNVSGGGTLQAAVKLISDQGASSAPSASXXXXXGSRVXXXXXXXXXXXXXXXXXXXXXXXVQAPAAPVPAPVPVVPGQPAPTSYGTHVQASMHDPPPYTA--YATPAVA-----------PGASSGSS-----------AGQYRPPPVAPGA--AAATPYAPANY 736
V + QAQNLKKVQ+IGKQDPYVRAKL++ KI E RSST TD NP W K VFTF+VPATV L L +VL+V NDNL+AD++IGTTG I + GE +WWN+S GGT+QA ++LI+ + + + SR + AA PA V +P+ SYG A+++ PPP+ A +ATP A PGA + S+ A YRPPPVAPGA A A P+ A Y
Sbjct: 190 VRVCQAQNLKKVQMIGKQDPYVRAKLLFNGHKIGECRSSTHTDGGRNPTWQNMAKSVFTFYVPATVTLDTLAVVLDVVNDNLVADSIIGTTGSIGLQTAATGESKWWNISSGGTIQAIIELITPESGGGGGTGTHPNTAYSR-------------------------NSAAAADPA---VASSRPSGGSYGGGRVATVN-PPPHVAVAHATPVAAGAPGNAYGGAAPGAMAMSNPPPSYESHVAVASSYRPPPVAPGATPAPAGPHGGAAY 431 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9413.17174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9413.17174.1 >prot_H-paniculata_contig9413.17174.1 ID=prot_H-paniculata_contig9413.17174.1|Name=mRNA_H-paniculata_contig9413.17174.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=310bp MYQDQKISEARSSTDTDANCNPNWTRQPKHVFTFFVPATVLLTDLKLVLEback to top mRNA from alignment at H-paniculata_contig9413:1547..9400+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9413.17174.1 ID=mRNA_H-paniculata_contig9413.17174.1|Name=mRNA_H-paniculata_contig9413.17174.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7854bp|location=Sequence derived from alignment at H-paniculata_contig9413:1547..9400+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9413:1547..9400+ >mRNA_H-paniculata_contig9413.17174.1 ID=mRNA_H-paniculata_contig9413.17174.1|Name=mRNA_H-paniculata_contig9413.17174.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1860bp|location=Sequence derived from alignment at H-paniculata_contig9413:1547..9400+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |