mRNA_H-paniculata_contig9412.17173.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9412.17173.1
Unique NamemRNA_H-paniculata_contig9412.17173.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig9412.17173.1 vs. uniprot
Match: W7U829_9STRA (Morc family cw-type zinc finger protein 4 isoform 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U829_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 8.860e-14
Identity = 44/97 (45.36%), Postives = 58/97 (59.79%), Query Frame = 1
Query:    1 LWPFSAVAELVHNSSDAGATEVRLSI--ERFGPNKDRNFVVIDDGSGMTNREMGQLFKYGKDYGDLSYSQERCGRNGVGFKQGVLRLGETAVVISVS 285
            +W F A+AEL+HNS DAG+T + + +  E  G        + D+G GM   EM  +F+ GK Y     + ER GR G GFKQG LR+G TAVV+S S
Sbjct:   86 VWLFGALAELLHNSLDAGSTRLHIDVREEDGGEGGVMVLEIKDNGVGMGPDEMEGMFRLGKTYARDRKNVERVGRYGCGFKQGSLRIGSTAVVLSKS 182          
BLAST of mRNA_H-paniculata_contig9412.17173.1 vs. uniprot
Match: A0A0G4G9P0_9ALVE (CW-type domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G9P0_9ALVE)

HSP 1 Score: 77.0 bits (188), Expect = 1.190e-13
Identity = 45/136 (33.09%), Postives = 73/136 (53.68%), Query Frame = 1
Query:    4 WPFSAVAELVHNSSDAGATEVRLSIERFGPNKDRNFVVIDDGSGMTNREM-GQLFKYGKDYGDLSYSQERCGRNGVGFKQGVLRLGETAVVISVSKGEEAPMNQRCVPTASFGILSIDAYRKSLRKNTRERVVVEY 408
            W F  VAE+VHNSSDA AT++ + +     +++    V D+G+GM+   +  +LF +G+D  +    Q + GR GVG+K G +R+ +TAVV++  K  +         T S GI+    +R+  R    E   + Y
Sbjct:  159 WLFGGVAEMVHNSSDADATQLYIDVFFDSHHQENVLEVRDNGTGMSPETVKDRLFSFGRDEAETQRDQSKAGRWGVGYKMGSMRVADTAVVVTKQKKSD---------TVSVGIMCNRPFREEGRLFVFENTTLTY 285          
BLAST of mRNA_H-paniculata_contig9412.17173.1 vs. uniprot
Match: A0A446JCN9_TRITD (Uncharacterized protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446JCN9_TRITD)

HSP 1 Score: 75.1 bits (183), Expect = 3.830e-13
Identity = 41/96 (42.71%), Postives = 60/96 (62.50%), Query Frame = 1
Query:    4 WPFSAVAELVHNSSDAGATEVRLSIERFGPNKDRNFV----VIDDGSGMTNREMGQLFKYGKDYGDLSYSQERCGRNGVGFKQGVLRLGETAVVIS 279
            W F AVAEL+ NS DAGA+ + +SI+     K +  V    V DDG GMT  EM ++  +G D  +  Y Q++ GR G+GFK G ++LG+ A+V++
Sbjct:  103 WIFGAVAELIDNSRDAGASRLDISIQSMFSKKAKGKVPVLCVSDDGHGMTYEEMMRMVSFGHDKPN-EYCQDQIGRFGIGFKSGAMKLGKDALVLT 197          
BLAST of mRNA_H-paniculata_contig9412.17173.1 vs. uniprot
Match: A0A8J5W381_ZIZPA (Morc6_S5 domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5W381_ZIZPA)

HSP 1 Score: 74.7 bits (182), Expect = 7.940e-13
Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = 1
Query:    4 WPFSAVAELVHNSSDAGATEVRLSIERFGPNKDRN----FVVIDDGSGMTNREMGQLFKYGKDYGDLSYSQERCGRNGVGFKQGVLRLGETAVVIS 279
            W F A+AEL+ NS DAGA+ + +SI      K  +    F VIDDG GMT  EM ++  +G    D  + Q+  GR G+GFK G ++LG+ A+V++
Sbjct:  921 WIFGAIAELIDNSRDAGASRLNISINTLFSKKAESKIPVFSVIDDGHGMTYDEMMRMISFGHKRPD-EHRQDHIGRFGIGFKTGAMKLGKDAIVLT 1015          
BLAST of mRNA_H-paniculata_contig9412.17173.1 vs. uniprot
Match: A0A8I7B3Y7_HORVV (CW-type domain-containing protein n=12 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I7B3Y7_HORVV)

HSP 1 Score: 74.3 bits (181), Expect = 1.020e-12
Identity = 41/96 (42.71%), Postives = 61/96 (63.54%), Query Frame = 1
Query:    4 WPFSAVAELVHNSSDAGATEVRLSIERFGPNKDRNFV----VIDDGSGMTNREMGQLFKYGKDYGDLSYSQERCGRNGVGFKQGVLRLGETAVVIS 279
            W F AVAELV NS DAGA+ + +SI+     K++  V    V DDG GMT  EM ++  +G D G   + +++ GR G+GFK G ++LG+ A+V++
Sbjct:  222 WIFGAVAELVDNSRDAGASRLDISIQSMFSKKEKGKVPVLCVSDDGLGMTYEEMMRMVSFGHD-GANEHCKDQIGRFGIGFKSGSMKLGKDALVLT 316          
BLAST of mRNA_H-paniculata_contig9412.17173.1 vs. uniprot
Match: A0A194YK73_SORBI (CW-type domain-containing protein n=2 Tax=Andropogoneae TaxID=147429 RepID=A0A194YK73_SORBI)

HSP 1 Score: 73.6 bits (179), Expect = 1.910e-12
Identity = 38/103 (36.89%), Postives = 63/103 (61.17%), Query Frame = 1
Query:    4 WPFSAVAELVHNSSDAGATEVRLSIERFGPNKDRNFV----VIDDGSGMTNREMGQLFKYGKDYGDLSYSQERCGRNGVGFKQGVLRLGETAVVISVSKGEEA 300
            W F A+AEL+ NS DAGA+ + +SIE     K +  +    VIDDG GMT  +M ++  +G    +  + +++ GR G+GFK G ++LG+ A+V++ +K   +
Sbjct:  247 WMFGAIAELIDNSRDAGASRLSISIEHLFSKKAQKKIPVLSVIDDGHGMTYPDMMRMISFGHKRPN-EHREDQIGRFGIGFKTGAMKLGKDAIVLTQTKSSRS 348          
BLAST of mRNA_H-paniculata_contig9412.17173.1 vs. uniprot
Match: UPI001F5D83C9 (MORC family CW-type zinc finger protein 4-like n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D83C9)

HSP 1 Score: 73.2 bits (178), Expect = 2.590e-12
Identity = 41/96 (42.71%), Postives = 60/96 (62.50%), Query Frame = 1
Query:    4 WPFSAVAELVHNSSDAGATEVRLSIERFGPNKDRNFV----VIDDGSGMTNREMGQLFKYGKDYGDLSYSQERCGRNGVGFKQGVLRLGETAVVIS 279
            W F A+AELV NS DAGA+ + +SI+     K    V    VIDDG GMT  EM ++  +G    +  +S+++ GR G+GFK G ++LG+ AVV++
Sbjct:  211 WIFGAIAELVDNSRDAGASRLDISIQTMFSKKAEGKVPVLSVIDDGCGMTYAEMMRMISFGHKRPN-EHSKDQIGRFGIGFKTGAMKLGKDAVVLT 305          
BLAST of mRNA_H-paniculata_contig9412.17173.1 vs. uniprot
Match: A0A061RQC8_9CHLO (Morc family cw-type zinc finger protein 3 n=3 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RQC8_9CHLO)

HSP 1 Score: 72.8 bits (177), Expect = 3.530e-12
Identity = 53/138 (38.41%), Postives = 74/138 (53.62%), Query Frame = 1
Query:   10 FSAVAELVHNSSDAGATEVRLSIERFGPNKDRNFVVIDDGSGMTNREMGQLFKYGKDYGDLSYSQERCGRNGVGFKQGVLRLGETAVVISVSKGEEAPMNQRCVPTASFGILSIDAYRKSLRKNTRERVVVEYATLNL 423
            F A+AELV NS D  AT+VR+ I   G      F V+DDG+GM++  M ++   G  +    +++ + G+ GVGFK G +R+GETAV+I+  + EE         TAS GILS D         T    VV +   NL
Sbjct:  295 FGAIAELVDNSWDQAATDVRIGILEEGGAP--VFHVMDDGNGMSHAGMRRMLSMG--HAREEHNKHKLGKYGVGFKNGAMRIGETAVIIT--REEE---------TASVGILSKDMKTGDPEDRTLWTPVVTFKMPNL 417          
BLAST of mRNA_H-paniculata_contig9412.17173.1 vs. uniprot
Match: A0A3L6PHX5_PANMI (MORC family CW-type zinc finger protein 3-like n=1 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6PHX5_PANMI)

HSP 1 Score: 72.4 bits (176), Expect = 4.650e-12
Identity = 36/103 (34.95%), Postives = 62/103 (60.19%), Query Frame = 1
Query:    4 WPFSAVAELVHNSSDAGATEVRLSIERFGPNKDRNFV----VIDDGSGMTNREMGQLFKYGKDYGDLSYSQERCGRNGVGFKQGVLRLGETAVVISVSKGEEA 300
            W F A+AEL+ NS DAGA+ + +S+E     K +  +    VIDDG GMT  +M ++  +G       + +++ GR G+GFK G ++LG+ A+V++ +   ++
Sbjct:  195 WIFGAIAELIDNSRDAGASRLNISVESLFSKKAQRKIPVLSVIDDGQGMTYADMMRMISFGHKR-PTDHREDQIGRFGIGFKTGAMKLGKDAIVLTQTSSSKS 296          
BLAST of mRNA_H-paniculata_contig9412.17173.1 vs. uniprot
Match: A0A1D6P4Q5_MAIZE (Protein MICRORCHIDIA 7 n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6P4Q5_MAIZE)

HSP 1 Score: 71.6 bits (174), Expect = 8.770e-12
Identity = 37/103 (35.92%), Postives = 63/103 (61.17%), Query Frame = 1
Query:    4 WPFSAVAELVHNSSDAGATEVRLSIERFGPNKDRNFV----VIDDGSGMTNREMGQLFKYGKDYGDLSYSQERCGRNGVGFKQGVLRLGETAVVISVSKGEEA 300
            W F A+AEL+ NS DAGA+ + +SIE     K +  +    VIDDG GMT  ++ ++  +G    +  + +++ GR G+GFK G ++LG+ A+V++ +K   +
Sbjct:  116 WIFGAIAELIDNSRDAGASRLSISIEHLFSKKAQKKIPVLSVIDDGHGMTYPDIMRMISFGHKRPN-GHREDQIGRFGIGFKTGAMKLGKDAIVLTQTKSSRS 217          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9412.17173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7U829_9STRA8.860e-1445.36Morc family cw-type zinc finger protein 4 isoform ... [more]
A0A0G4G9P0_9ALVE1.190e-1333.09CW-type domain-containing protein n=1 Tax=Chromera... [more]
A0A446JCN9_TRITD3.830e-1342.71Uncharacterized protein n=1 Tax=Triticum turgidum ... [more]
A0A8J5W381_ZIZPA7.940e-1341.67Morc6_S5 domain-containing protein n=1 Tax=Zizania... [more]
A0A8I7B3Y7_HORVV1.020e-1242.71CW-type domain-containing protein n=12 Tax=Hordeum... [more]
A0A194YK73_SORBI1.910e-1236.89CW-type domain-containing protein n=2 Tax=Andropog... [more]
UPI001F5D83C92.590e-1242.71MORC family CW-type zinc finger protein 4-like n=1... [more]
A0A061RQC8_9CHLO3.530e-1238.41Morc family cw-type zinc finger protein 3 n=3 Tax=... [more]
A0A3L6PHX5_PANMI4.650e-1234.95MORC family CW-type zinc finger protein 3-like n=1... [more]
A0A1D6P4Q5_MAIZE8.770e-1235.92Protein MICRORCHIDIA 7 n=1 Tax=Zea mays TaxID=4577... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9412contigH-paniculata_contig9412:3302..4168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score73.6
Seed ortholog evalue8.7e-11
Seed eggNOG ortholog4565.Traes_1AL_8BEB7F626.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
EggNOG OGs37KPH@33090,3GDJH@35493,3ICZ2@38820,3KTSJ@4447,KOG1845@1,KOG1845@2759
COG Functional cat.D
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons2
Model size435
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931170.744016-CDS-H-paniculata_contig9412:3303..34461622931170.744016-CDS-H-paniculata_contig9412:3303..3446Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9412 3304..3446 -
1691481622.332276-CDS-H-paniculata_contig9412:3303..34461691481622.332276-CDS-H-paniculata_contig9412:3303..3446Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9412 3304..3446 -
1622931170.7618499-CDS-H-paniculata_contig9412:3879..41681622931170.7618499-CDS-H-paniculata_contig9412:3879..4168Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9412 3880..4168 -
1691481622.3467135-CDS-H-paniculata_contig9412:3879..41681691481622.3467135-CDS-H-paniculata_contig9412:3879..4168Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9412 3880..4168 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9412.17173.1prot_H-paniculata_contig9412.17173.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9412 3304..4168 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9412.17173.1

>prot_H-paniculata_contig9412.17173.1 ID=prot_H-paniculata_contig9412.17173.1|Name=mRNA_H-paniculata_contig9412.17173.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=144bp
LWPFSAVAELVHNSSDAGATEVRLSIERFGPNKDRNFVVIDDGSGMTNRE
MGQLFKYGKDYGDLSYSQERCGRNGVGFKQGVLRLGETAVVISVSKGEEA
PMNQRCVPTASFGILSIDAYRKSLRKNTRERVVVEYATLNLMTM
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mRNA from alignment at H-paniculata_contig9412:3302..4168-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9412.17173.1 ID=mRNA_H-paniculata_contig9412.17173.1|Name=mRNA_H-paniculata_contig9412.17173.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=867bp|location=Sequence derived from alignment at H-paniculata_contig9412:3302..4168- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTGGCCGTTCAGCGCTGTGGCGGAGCTCGTTCATAACAGCTCGGACGC TGGCGCCACAGAGGTACGGCTCAGTATCGAGAGATTTGGCCCCAATAAGG ACCGAAATTTTGTTGTCATTGACGACGGGAGTGGCATGACGAACAGAGAA ATGGGACAGCTGTTTAAGTACGGGAAGGACTACGGAGACCTTTCGTACTC GCAGGAGCGCTGCGGGCGTAATGGCGTCGGGTTCAAGCAGGGGGTGCTGC GACTTGGAGAGACTGCCGTCGTCATCTCTGTTAGCAAAGGTGAGCATAGT TCTGTAAGGGTGGCAACAGCCAAGAGCTAACATGGAGAGGCGTTTCTGCT TCTCTTTCGCCGGGATAGAACGTATGACGGTTGTACAACTATAACTTTGT TCTGACAATCTATCAGAGCTCTTCAGCGATTTGGGCCTTTTTCAGTTTTG TTCGTTGCTGTCGCCGCGTACTGCAGCGACTCCATAGTATAGGAGTCTCG TCGTGTACTCTTTGTGAGTCCCATTCCATGTTATACTCTGGTGATGCCCA ATGCTCAGTATTGGTCATCTTTAGCCCGTGCGGTAAGCTGGCCCGCACGA CTTGGGTGCTCTTCTCCCTTTGTTTTTGACGCTATTCACGTCAATCCCGG CACCGTCTTTTTAACCATTTGTTTCCTAAAAGTCGACCCACTTCTCTCAT ACGCGCACCTGCCACTTCTCAGGTGAGGAAGCACCGATGAATCAGCGATG CGTTCCCACGGCATCATTCGGGATTCTCAGCATCGACGCCTACCGGAAGA GCCTCCGCAAGAACACGCGTGAGCGTGTTGTAGTGGAATACGCCACGCTG AACCTGATGACGATGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig9412:3302..4168-

>mRNA_H-paniculata_contig9412.17173.1 ID=mRNA_H-paniculata_contig9412.17173.1|Name=mRNA_H-paniculata_contig9412.17173.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at H-paniculata_contig9412:3302..4168- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTGGCCGTTCAGCGCTGTGGCGGAGCTCGTTCATAACAGCTCGGACGC
TGGCGCCACAGAGGTACGGCTCAGTATCGAGAGATTTGGCCCCAATAAGG
ACCGAAATTTTGTTGTCATTGACGACGGGAGTGGCATGACGAACAGAGAA
ATGGGACAGCTGTTTAAGTACGGGAAGGACTACGGAGACCTTTCGTACTC
GCAGGAGCGCTGCGGGCGTAATGGCGTCGGGTTCAAGCAGGGGGTGCTGC
GACTTGGAGAGACTGCCGTCGTCATCTCTGTTAGCAAAGCTGTGGCCGTT
CAGCGCTGTGGCGGAGCTCGTTCATAACAGCTCGGACGCTGGCGCCACAG
AGGTACGGCTCAGTATCGAGAGATTTGGCCCCAATAAGGACCGAAATTTT
GTTGTCATTGACGACGGGAGTGGCATGACGAACAGAGAAATGGGACAGCT
GTTTAAGTACGGGAAGGACTACGGAGACCTTTCGTACTCGCAGGAGCGCT
GCGGGCGTAATGGCGTCGGGTTCAAGCAGGGGGTGCTGCGACTTGGAGAG
ACTGCCGTCGTCATCTCTGTTAGCAAAGGTGAGGAAGCACCGATGAATCA
GCGATGCGTTCCCACGGCATCATTCGGGATTCTCAGCATCGACGCCTACC
GGAAGAGCCTCCGCAAGAACACGCGTGAGCGTGTTGTAGTGGAATACGCC
ACGCTGAACCTGATGACGATGGTGAGGAAGCACCGATGAATCAGCGATGC
GTTCCCACGGCATCATTCGGGATTCTCAGCATCGACGCCTACCGGAAGAG
CCTCCGCAAGAACACGCGTGAGCGTGTTGTAGTGGAATACGCCACGCTGA
ACCTGATGACGATG
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