prot_H-paniculata_contig9409.17170.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig9409.17170.1
Unique Nameprot_H-paniculata_contig9409.17170.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length121
Homology
BLAST of mRNA_H-paniculata_contig9409.17170.1 vs. uniprot
Match: A0A6D2K295_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2K295_9BRAS)

HSP 1 Score: 89.4 bits (220), Expect = 6.600e-19
Identity = 45/118 (38.14%), Postives = 79/118 (66.95%), Query Frame = 0
Query:    5 DIAFAVSQAARFVATPTSVHMGSVKRILRYLKGAPNL----SRDSNFELTGFCDASYGTGNPEKAGSTSGSMYSLSGGVVHFSSNLQKITAQSTTEAELIVISTCAKQGIYLSGILGE 118
            D+A+ +   +RF++ P S+H  +VK +LRY+KG+ ++    ++D N ++ G+CD+ Y   + +K  S SG ++++ G VV + SNLQ++ A STTEAE I ++   K+GI+L G+L +
Sbjct:  107 DLAYGIGLVSRFMSKPGSIHWEAVKWLLRYIKGSLDVELLYTKDKNLDIQGYCDSDYAA-DLDKRRSISGYVFTVGGNVVSWKSNLQRVAALSTTEAEYIALTEAVKEGIWLRGLLQD 223          
BLAST of mRNA_H-paniculata_contig9409.17170.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.580e-18
Identity = 50/119 (42.02%), Postives = 78/119 (65.55%), Query Frame = 0
Query:    5 DIAFAVSQAARFVATPTSVHMGSVKRILRYLKGAPNLS---RDSNFELTGFCDASY-GTGNPEKAGSTSGSMYSLSGGVVHFSSNLQKITAQSTTEAELIVISTCAKQGIYLSGILGEL 119
            +I +AV    R +  PT+ HM   KR+LRYL+G P++    R   ++L  +CDAS+ G+    +  S++G ++ L+GGVV  +S LQK+TAQS+  AE+I ++T A++ IYL G+L EL
Sbjct:  502 EIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAIYLQGVLSEL 620          
BLAST of mRNA_H-paniculata_contig9409.17170.1 vs. uniprot
Match: A0A6D2IQ52_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IQ52_9BRAS)

HSP 1 Score: 89.4 bits (220), Expect = 2.700e-18
Identity = 45/118 (38.14%), Postives = 79/118 (66.95%), Query Frame = 0
Query:    5 DIAFAVSQAARFVATPTSVHMGSVKRILRYLKGAPNL----SRDSNFELTGFCDASYGTGNPEKAGSTSGSMYSLSGGVVHFSSNLQKITAQSTTEAELIVISTCAKQGIYLSGILGE 118
            D+A+ +   +RF++ P S+H  +VK +LRY+KG+ ++    ++D N ++ G+CD+ Y   + +K  S SG ++++ G VV + SNLQ++ A STTEAE I ++   K+GI+L G+L +
Sbjct: 1151 DLAYGIGLVSRFMSRPGSIHWEAVKWLLRYIKGSLDVELLYTKDKNLDIQGYCDSDYAA-DLDKRRSISGYVFTVGGNVVSWKSNLQRVAALSTTEAEYIALTEAVKEGIWLRGLLQD 1267          
BLAST of mRNA_H-paniculata_contig9409.17170.1 vs. uniprot
Match: A0A6H5JV56_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV56_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 4.900e-18
Identity = 49/111 (44.14%), Postives = 73/111 (65.77%), Query Frame = 0
Query:   13 AARFVATPTSVHMGSVKRILRYLKGAPNLS----RDSNFELTGFCDASYGTGNPEKAGSTSGSMYSLSGGVVHFSSNLQKITAQSTTEAELIVISTCAKQGIYLSGILGEL 119
            AAR +++P   H+ ++K I RYL+  PNLS    +DS FEL  + DASY +    K  S +GSM  L+G +++FSS +Q+I AQS++E E   I++ AK G+Y S ++GEL
Sbjct:  689 AARRMSSPREGHLANIKSIFRYLRKRPNLSLVYRKDSRFELPCYSDASYASTKDYK--SVTGSMVFLAGDLIYFSSRVQRIVAQSSSEGEFFTINSTAKHGVYFSSLMGEL 797          
BLAST of mRNA_H-paniculata_contig9409.17170.1 vs. uniprot
Match: A0A1U8HFH5_CAPAN (uncharacterized mitochondrial protein AtMg00810-like n=2 Tax=Capsicum annuum TaxID=4072 RepID=A0A1U8HFH5_CAPAN)

HSP 1 Score: 83.6 bits (205), Expect = 7.570e-18
Identity = 46/120 (38.33%), Postives = 77/120 (64.17%), Query Frame = 0
Query:    5 DIAFAVSQAARFVATPTSVHMGSVKRILRYLKGAPN----LSRDSNFELTGFCDASYGTGNPEKAGSTSGSMYSLSGGVVHFSSNLQKITAQSTTEAELIVISTCAKQGIYLSGILGELR 120
            DIAF+V   +RF+  P+ +H+G+VKRILRY+ G  +     S+ ++F LTGF D+ Y  GN +   STSG +++L  G + +SS  Q++ A ST+E+E I +++ A Q ++L  ++ +  
Sbjct:   47 DIAFSVGVVSRFMHNPSKLHLGAVKRILRYIVGTLDHGIWYSKVTSFTLTGFTDSDY-AGNIDDRKSTSGFLFNLGSGAISWSSKKQEVVALSTSESEYIALASAACQEVWLRRLVADFN 165          
BLAST of mRNA_H-paniculata_contig9409.17170.1 vs. uniprot
Match: A0A5D3DVM8_CUCME (Putative mitochondrial protein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DVM8_CUCME)

HSP 1 Score: 85.9 bits (211), Expect = 1.830e-17
Identity = 52/120 (43.33%), Postives = 70/120 (58.33%), Query Frame = 0
Query:    5 DIAFAVSQAARFVATPTSVHMGSVKRILRYLKGAPNLS----RDSNFELTGFCDASYGTGNPEKAGSTSGSMYSLSGGVVHFSSNLQKITAQSTTEAELIVISTCAKQGIYLSGILGELR 120
            DI +AVS  +RF+ +P   H+ + KRILRY+KG P+L     R     L GF D+ Y  G+     S SG ++ L  GV+ +SS  Q I   STTEAEL+V ++CA Q I+L  IL  L 
Sbjct:  137 DIMYAVSSISRFMNSPIKFHLLAAKRILRYIKGTPDLGMLYQRRRKLNLVGFSDSDY-AGDLNDRKSISGYVFMLGSGVISWSSKKQPIVTLSTTEAELVVATSCACQAIWLRNILENLN 255          
BLAST of mRNA_H-paniculata_contig9409.17170.1 vs. uniprot
Match: A0A1S4E135_CUCME (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Cucumis melo TaxID=3656 RepID=A0A1S4E135_CUCME)

HSP 1 Score: 85.9 bits (211), Expect = 2.210e-17
Identity = 52/120 (43.33%), Postives = 70/120 (58.33%), Query Frame = 0
Query:    5 DIAFAVSQAARFVATPTSVHMGSVKRILRYLKGAPNLS----RDSNFELTGFCDASYGTGNPEKAGSTSGSMYSLSGGVVHFSSNLQKITAQSTTEAELIVISTCAKQGIYLSGILGELR 120
            DI +AVS  +RF+ +P   H+ + KRILRY+KG P+L     R     L GF D+ Y  G+     S SG ++ L  GV+ +SS  Q I   STTEAEL+V ++CA Q I+L  IL  L 
Sbjct:  166 DIMYAVSSISRFMNSPIKFHLLAAKRILRYIKGTPDLGMLYQRRRKLNLVGFSDSDY-AGDLNDRKSISGYVFMLGSGVISWSSKKQPIVTLSTTEAELVVATSCACQAIWLRNILENLN 284          
BLAST of mRNA_H-paniculata_contig9409.17170.1 vs. uniprot
Match: A0A438F340_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438F340_VITVI)

HSP 1 Score: 81.6 bits (200), Expect = 2.510e-17
Identity = 44/118 (37.29%), Postives = 74/118 (62.71%), Query Frame = 0
Query:    5 DIAFAVSQAARFVATPTSVHMGSVKRILRYLKGAPNLS----RDSNFELTGFCDASYGTGNPEKAGSTSGSMYSLSGGVVHFSSNLQKITAQSTTEAELIVISTCAKQGIYLSGILGE 118
            D+ F  S  +RF+++P++VHMG  KR+L+Y+KG  NL     +    +L G+ D+ +  G+ +   STSG  +++  GV+ ++S  Q++ AQSTTEAE I ++  A Q I+L  +L +
Sbjct:   27 DLMFPASLLSRFMSSPSNVHMGVAKRVLKYVKGTTNLGIWYLKTGGVKLDGYADSDW-AGSVDDMKSTSGYAFTIGSGVICWNSRKQEVVAQSTTEAEYISLAAAANQAIWLRKLLAD 143          
BLAST of mRNA_H-paniculata_contig9409.17170.1 vs. uniprot
Match: A0A392NIP1_9FABA (Uncharacterized protein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392NIP1_9FABA)

HSP 1 Score: 80.5 bits (197), Expect = 1.250e-16
Identity = 46/120 (38.33%), Postives = 70/120 (58.33%), Query Frame = 0
Query:    5 DIAFAVSQAARFVATPTSVHMGSVKRILRYLKGAPNLS-----RDSNFELTGFCDASYGTGNPEKAGSTSGSMYSLSGGVVHFSSNLQKITAQSTTEAELIVISTCAKQGIYLSGILGEL 119
            D+ ++V   AR++  P  +H+ + KRILRYLKG           + N +L G+ D+ Y   N ++  STSG ++ L  G + +SS  Q I   STTEAE +V S+CA QG+++  IL +L
Sbjct:   14 DLCYSVCLIARYMERPXEIHLAAAKRILRYLKGTIGFGILYEKGNLNLKLEGWTDSDYAGDNDDR-NSTSGYVFKLGSGAISWSSKKQPIVTLSTTEAEFVVASSCACQGVWVRRILHQL 132          
BLAST of mRNA_H-paniculata_contig9409.17170.1 vs. uniprot
Match: A5BR97_VITVI (Integrase catalytic domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BR97_VITVI)

HSP 1 Score: 84.3 bits (207), Expect = 1.560e-16
Identity = 46/119 (38.66%), Postives = 75/119 (63.03%), Query Frame = 0
Query:    5 DIAFAVSQAARFVATPTSVHMGSVKRILRYLKGAPNLS----RDSNFELTGFCDASYGTGNPEKAGSTSGSMYSLSGGVVHFSSNLQKITAQSTTEAELIVISTCAKQGIYLSGILGEL 119
            D+ F  S  +RF+++P++VHMG  KR+L+YLKG  NL     +    +L G+ D+ +  G+ +   STSG  +++  GV+ ++S  Q++ AQSTTEAE I ++  A Q I+L  +L +L
Sbjct: 1833 DLMFPASLLSRFMSSPSNVHMGVAKRVLKYLKGTTNLGIWYLKTGGVKLDGYADSDW-AGSVDDMKSTSGYAFTIGSGVICWNSRKQEVVAQSTTEAEYISLAAAANQAIWLRKLLADL 1950          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9409.17170.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6D2K295_9BRAS6.600e-1938.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J897_9PHAE2.580e-1842.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6D2IQ52_9BRAS2.700e-1838.14Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JV56_9PHAE4.900e-1844.14Integrase catalytic domain-containing protein n=1 ... [more]
A0A1U8HFH5_CAPAN7.570e-1838.33uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A5D3DVM8_CUCME1.830e-1743.33Putative mitochondrial protein n=1 Tax=Cucumis mel... [more]
A0A1S4E135_CUCME2.210e-1743.33uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A438F340_VITVI2.510e-1737.29Retrovirus-related Pol polyprotein from transposon... [more]
A0A392NIP1_9FABA1.250e-1638.33Uncharacterized protein (Fragment) n=1 Tax=Trifoli... [more]
A5BR97_VITVI1.560e-1638.66Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 2..119
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 2..119

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9409contigH-paniculata_contig9409:105..467 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9409.17170.1mRNA_H-paniculata_contig9409.17170.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig9409 105..467 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig9409.17170.1 ID=prot_H-paniculata_contig9409.17170.1|Name=mRNA_H-paniculata_contig9409.17170.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
STCVDIAFAVSQAARFVATPTSVHMGSVKRILRYLKGAPNLSRDSNFELT
GFCDASYGTGNPEKAGSTSGSMYSLSGGVVHFSSNLQKITAQSTTEAELI
VISTCAKQGIYLSGILGELR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like