mRNA_H-paniculata_contig9409.17170.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-paniculata_contig9409.17170.1 vs. uniprot
Match: A0A6D2K295_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2K295_9BRAS) HSP 1 Score: 89.4 bits (220), Expect = 6.600e-19 Identity = 45/118 (38.14%), Postives = 79/118 (66.95%), Query Frame = 1 Query: 13 DIAFAVSQAARFVATPTSVHMGSVKRILRYLKGAPNL----SRDSNFELTGFCDASYGTGNPEKAGSTSGSMYSLSGGVVHFSSNLQKITAQSTTEAELIVISTCAKQGIYLSGILGE 354 D+A+ + +RF++ P S+H +VK +LRY+KG+ ++ ++D N ++ G+CD+ Y + +K S SG ++++ G VV + SNLQ++ A STTEAE I ++ K+GI+L G+L + Sbjct: 107 DLAYGIGLVSRFMSKPGSIHWEAVKWLLRYIKGSLDVELLYTKDKNLDIQGYCDSDYAA-DLDKRRSISGYVFTVGGNVVSWKSNLQRVAALSTTEAEYIALTEAVKEGIWLRGLLQD 223
BLAST of mRNA_H-paniculata_contig9409.17170.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 2.580e-18 Identity = 50/119 (42.02%), Postives = 78/119 (65.55%), Query Frame = 1 Query: 13 DIAFAVSQAARFVATPTSVHMGSVKRILRYLKGAPNLS---RDSNFELTGFCDASY-GTGNPEKAGSTSGSMYSLSGGVVHFSSNLQKITAQSTTEAELIVISTCAKQGIYLSGILGEL 357 +I +AV R + PT+ HM KR+LRYL+G P++ R ++L +CDAS+ G+ + S++G ++ L+GGVV +S LQK+TAQS+ AE+I ++T A++ IYL G+L EL Sbjct: 502 EIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAIYLQGVLSEL 620
BLAST of mRNA_H-paniculata_contig9409.17170.1 vs. uniprot
Match: A0A6D2IQ52_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IQ52_9BRAS) HSP 1 Score: 89.4 bits (220), Expect = 2.700e-18 Identity = 45/118 (38.14%), Postives = 79/118 (66.95%), Query Frame = 1 Query: 13 DIAFAVSQAARFVATPTSVHMGSVKRILRYLKGAPNL----SRDSNFELTGFCDASYGTGNPEKAGSTSGSMYSLSGGVVHFSSNLQKITAQSTTEAELIVISTCAKQGIYLSGILGE 354 D+A+ + +RF++ P S+H +VK +LRY+KG+ ++ ++D N ++ G+CD+ Y + +K S SG ++++ G VV + SNLQ++ A STTEAE I ++ K+GI+L G+L + Sbjct: 1151 DLAYGIGLVSRFMSRPGSIHWEAVKWLLRYIKGSLDVELLYTKDKNLDIQGYCDSDYAA-DLDKRRSISGYVFTVGGNVVSWKSNLQRVAALSTTEAEYIALTEAVKEGIWLRGLLQD 1267
BLAST of mRNA_H-paniculata_contig9409.17170.1 vs. uniprot
Match: A0A6H5JV56_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV56_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 4.900e-18 Identity = 49/111 (44.14%), Postives = 73/111 (65.77%), Query Frame = 1 Query: 37 AARFVATPTSVHMGSVKRILRYLKGAPNLS----RDSNFELTGFCDASYGTGNPEKAGSTSGSMYSLSGGVVHFSSNLQKITAQSTTEAELIVISTCAKQGIYLSGILGEL 357 AAR +++P H+ ++K I RYL+ PNLS +DS FEL + DASY + K S +GSM L+G +++FSS +Q+I AQS++E E I++ AK G+Y S ++GEL Sbjct: 689 AARRMSSPREGHLANIKSIFRYLRKRPNLSLVYRKDSRFELPCYSDASYASTKDYK--SVTGSMVFLAGDLIYFSSRVQRIVAQSSSEGEFFTINSTAKHGVYFSSLMGEL 797
BLAST of mRNA_H-paniculata_contig9409.17170.1 vs. uniprot
Match: A0A1U8HFH5_CAPAN (uncharacterized mitochondrial protein AtMg00810-like n=2 Tax=Capsicum annuum TaxID=4072 RepID=A0A1U8HFH5_CAPAN) HSP 1 Score: 83.6 bits (205), Expect = 7.570e-18 Identity = 46/120 (38.33%), Postives = 77/120 (64.17%), Query Frame = 1 Query: 13 DIAFAVSQAARFVATPTSVHMGSVKRILRYLKGAPN----LSRDSNFELTGFCDASYGTGNPEKAGSTSGSMYSLSGGVVHFSSNLQKITAQSTTEAELIVISTCAKQGIYLSGILGELR 360 DIAF+V +RF+ P+ +H+G+VKRILRY+ G + S+ ++F LTGF D+ Y GN + STSG +++L G + +SS Q++ A ST+E+E I +++ A Q ++L ++ + Sbjct: 47 DIAFSVGVVSRFMHNPSKLHLGAVKRILRYIVGTLDHGIWYSKVTSFTLTGFTDSDY-AGNIDDRKSTSGFLFNLGSGAISWSSKKQEVVALSTSESEYIALASAACQEVWLRRLVADFN 165
BLAST of mRNA_H-paniculata_contig9409.17170.1 vs. uniprot
Match: A0A5D3DVM8_CUCME (Putative mitochondrial protein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DVM8_CUCME) HSP 1 Score: 85.9 bits (211), Expect = 1.830e-17 Identity = 52/120 (43.33%), Postives = 70/120 (58.33%), Query Frame = 1 Query: 13 DIAFAVSQAARFVATPTSVHMGSVKRILRYLKGAPNLS----RDSNFELTGFCDASYGTGNPEKAGSTSGSMYSLSGGVVHFSSNLQKITAQSTTEAELIVISTCAKQGIYLSGILGELR 360 DI +AVS +RF+ +P H+ + KRILRY+KG P+L R L GF D+ Y G+ S SG ++ L GV+ +SS Q I STTEAEL+V ++CA Q I+L IL L Sbjct: 137 DIMYAVSSISRFMNSPIKFHLLAAKRILRYIKGTPDLGMLYQRRRKLNLVGFSDSDY-AGDLNDRKSISGYVFMLGSGVISWSSKKQPIVTLSTTEAELVVATSCACQAIWLRNILENLN 255
BLAST of mRNA_H-paniculata_contig9409.17170.1 vs. uniprot
Match: A0A1S4E135_CUCME (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Cucumis melo TaxID=3656 RepID=A0A1S4E135_CUCME) HSP 1 Score: 85.9 bits (211), Expect = 2.210e-17 Identity = 52/120 (43.33%), Postives = 70/120 (58.33%), Query Frame = 1 Query: 13 DIAFAVSQAARFVATPTSVHMGSVKRILRYLKGAPNLS----RDSNFELTGFCDASYGTGNPEKAGSTSGSMYSLSGGVVHFSSNLQKITAQSTTEAELIVISTCAKQGIYLSGILGELR 360 DI +AVS +RF+ +P H+ + KRILRY+KG P+L R L GF D+ Y G+ S SG ++ L GV+ +SS Q I STTEAEL+V ++CA Q I+L IL L Sbjct: 166 DIMYAVSSISRFMNSPIKFHLLAAKRILRYIKGTPDLGMLYQRRRKLNLVGFSDSDY-AGDLNDRKSISGYVFMLGSGVISWSSKKQPIVTLSTTEAELVVATSCACQAIWLRNILENLN 284
BLAST of mRNA_H-paniculata_contig9409.17170.1 vs. uniprot
Match: A0A438F340_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438F340_VITVI) HSP 1 Score: 81.6 bits (200), Expect = 2.510e-17 Identity = 44/118 (37.29%), Postives = 74/118 (62.71%), Query Frame = 1 Query: 13 DIAFAVSQAARFVATPTSVHMGSVKRILRYLKGAPNLS----RDSNFELTGFCDASYGTGNPEKAGSTSGSMYSLSGGVVHFSSNLQKITAQSTTEAELIVISTCAKQGIYLSGILGE 354 D+ F S +RF+++P++VHMG KR+L+Y+KG NL + +L G+ D+ + G+ + STSG +++ GV+ ++S Q++ AQSTTEAE I ++ A Q I+L +L + Sbjct: 27 DLMFPASLLSRFMSSPSNVHMGVAKRVLKYVKGTTNLGIWYLKTGGVKLDGYADSDW-AGSVDDMKSTSGYAFTIGSGVICWNSRKQEVVAQSTTEAEYISLAAAANQAIWLRKLLAD 143
BLAST of mRNA_H-paniculata_contig9409.17170.1 vs. uniprot
Match: A0A392NIP1_9FABA (Uncharacterized protein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392NIP1_9FABA) HSP 1 Score: 80.5 bits (197), Expect = 1.250e-16 Identity = 46/120 (38.33%), Postives = 70/120 (58.33%), Query Frame = 1 Query: 13 DIAFAVSQAARFVATPTSVHMGSVKRILRYLKGAPNLS-----RDSNFELTGFCDASYGTGNPEKAGSTSGSMYSLSGGVVHFSSNLQKITAQSTTEAELIVISTCAKQGIYLSGILGEL 357 D+ ++V AR++ P +H+ + KRILRYLKG + N +L G+ D+ Y N ++ STSG ++ L G + +SS Q I STTEAE +V S+CA QG+++ IL +L Sbjct: 14 DLCYSVCLIARYMERPXEIHLAAAKRILRYLKGTIGFGILYEKGNLNLKLEGWTDSDYAGDNDDR-NSTSGYVFKLGSGAISWSSKKQPIVTLSTTEAEFVVASSCACQGVWVRRILHQL 132
BLAST of mRNA_H-paniculata_contig9409.17170.1 vs. uniprot
Match: A5BR97_VITVI (Integrase catalytic domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BR97_VITVI) HSP 1 Score: 84.3 bits (207), Expect = 1.560e-16 Identity = 46/119 (38.66%), Postives = 75/119 (63.03%), Query Frame = 1 Query: 13 DIAFAVSQAARFVATPTSVHMGSVKRILRYLKGAPNLS----RDSNFELTGFCDASYGTGNPEKAGSTSGSMYSLSGGVVHFSSNLQKITAQSTTEAELIVISTCAKQGIYLSGILGEL 357 D+ F S +RF+++P++VHMG KR+L+YLKG NL + +L G+ D+ + G+ + STSG +++ GV+ ++S Q++ AQSTTEAE I ++ A Q I+L +L +L Sbjct: 1833 DLMFPASLLSRFMSSPSNVHMGVAKRVLKYLKGTTNLGIWYLKTGGVKLDGYADSDW-AGSVDDMKSTSGYAFTIGSGVICWNSRKQEVVAQSTTEAEYISLAAAANQAIWLRKLLADL 1950 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9409.17170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9409.17170.1 >prot_H-paniculata_contig9409.17170.1 ID=prot_H-paniculata_contig9409.17170.1|Name=mRNA_H-paniculata_contig9409.17170.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp STCVDIAFAVSQAARFVATPTSVHMGSVKRILRYLKGAPNLSRDSNFELTback to top mRNA from alignment at H-paniculata_contig9409:105..467+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9409.17170.1 ID=mRNA_H-paniculata_contig9409.17170.1|Name=mRNA_H-paniculata_contig9409.17170.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=363bp|location=Sequence derived from alignment at H-paniculata_contig9409:105..467+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9409:105..467+ >mRNA_H-paniculata_contig9409.17170.1 ID=mRNA_H-paniculata_contig9409.17170.1|Name=mRNA_H-paniculata_contig9409.17170.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at H-paniculata_contig9409:105..467+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |