mRNA_H-paniculata_contig1273.1719.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1273.1719.1
Unique NamemRNA_H-paniculata_contig1273.1719.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1273.1719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1273contigH-paniculata_contig1273:13308..15151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size549
Cds size387
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1273.1719.1prot_H-paniculata_contig1273.1719.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1273 13469..15151 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928995.7641754-UTR-H-paniculata_contig1273:13307..134681622928995.7641754-UTR-H-paniculata_contig1273:13307..13468Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1273 13308..13468 +
1691480695.1083949-UTR-H-paniculata_contig1273:13307..134681691480695.1083949-UTR-H-paniculata_contig1273:13307..13468Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1273 13308..13468 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928995.7767754-CDS-H-paniculata_contig1273:13468..136161622928995.7767754-CDS-H-paniculata_contig1273:13468..13616Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1273 13469..13616 +
1691480695.1163666-CDS-H-paniculata_contig1273:13468..136161691480695.1163666-CDS-H-paniculata_contig1273:13468..13616Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1273 13469..13616 +
1622928995.7925363-CDS-H-paniculata_contig1273:14214..143141622928995.7925363-CDS-H-paniculata_contig1273:14214..14314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1273 14215..14314 +
1691480695.1348603-CDS-H-paniculata_contig1273:14214..143141691480695.1348603-CDS-H-paniculata_contig1273:14214..14314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1273 14215..14314 +
1622928995.8114228-CDS-H-paniculata_contig1273:15012..151511622928995.8114228-CDS-H-paniculata_contig1273:15012..15151Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1273 15013..15151 +
1691480695.1465-CDS-H-paniculata_contig1273:15012..151511691480695.1465-CDS-H-paniculata_contig1273:15012..15151Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1273 15013..15151 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1273.1719.1

>prot_H-paniculata_contig1273.1719.1 ID=prot_H-paniculata_contig1273.1719.1|Name=mRNA_H-paniculata_contig1273.1719.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp
MDIGTTELKASKTYIRYAAGAFIRWATKHGMKMHPSLDEKKLKQSGLGTG
DKVGRTFTDKSLYLEFQEIRRVVIRDMVSPPNREVQLIEPSQLLSGYQVK
DDLRKRFEFSWDGEQEKALNAAQQVDGRR
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mRNA from alignment at H-paniculata_contig1273:13308..15151+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1273.1719.1 ID=mRNA_H-paniculata_contig1273.1719.1|Name=mRNA_H-paniculata_contig1273.1719.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1844bp|location=Sequence derived from alignment at H-paniculata_contig1273:13308..15151+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACGAAAAGTCCCTATCGACAACAATCCTTTTGTGCAGTGGGTAATAGAA
CGCGCTCAAAACTTCTTCGGAACGGGCAAGTTGTCTCTTACTTTTCTCAA
GTTCTAGTAAGCAGTACCGATCTGATACTCTGCCTTCGCCGTACAAGAGG
AGGGCGTCAGCATGGATATAGGGACGACGGAGTTGAAGGCGAGCAAAACA
TACATCAGGTATGCTGCTGGGGCCTTCATTCGGTGGGCGACGAAGCACGG
AATGAAGATGCACCCATCATTGGATGAGAAGAAGCTCAAACAATCGGGGC
TAGGCACAGGCAAGTTTTACAAAGTACGGTAGAATCTGCTGCACAATACA
AGCGCAACGTACAGACAGTACATGTTGCAATGTAGTGTGATCACTACTGT
GCACCTGGTCTAGCATGGTATAGCTCAACGGCGCAGGTGCGTTGCACTAG
GATAGGAGGTTGGGACCCAAGTGGGCACAACGCGTATCTAGAAAGAAGTG
GTCACGTGACAGCGGGGACGATACTGTAAATCCTACATGCGTAGTATAAC
ACCCCTCTGGGGTTGTGTTTGTCGTCCGAGATGTTCTTGGGACTGCGAAA
GCACCATCGCCGAAAGTGGTGTCGTTAGAAAGATCAACTGAAGATGATCC
CATACACGGGACTCTTGGATGCTCGTTGTTATAGCTTTTGCGGGAAAACG
TAGCTTGAAGAGCGCACCACCGTGGGTGTTACATGCGGTGAACAACTTGC
AGGTCGCCGGCGTAACATGCCTCATTTGCGTCTACTGAGTGCGCGATACC
CCGCAGCATACAGGAATTACCGGCTAAGTATCGCACAACCGTATCTCGTT
ATACTAAACCAACCGATTTTTATGTCCGACATACGTGCACATCTCCATGA
CCTACAGGGGATAAAGTTGGCAGGACCTTCACCGACAAGTCTCTATACCT
GGAGTTCCAGGAAATTAGGAGAGTGGTCATAAGAGACATGGTTTCGCCGC
CGAACAGGTGAGAACGCGACTACGGCGGTATGTCAGATCTCCAATACGTA
TTGTTGTCAAAAAAGCATTCAGGGATTGACAGGTACTCCTTCGACCTCAC
CATCCATAGTTCACTTGAGAAATTGCCGTCAGAGACAGTTGCCCATCTCT
TCGCGCTTAAAGGGTTAAGGCCGCTAAGATATTTTCCTCAATTTACAATA
TTGTCGAATGTCGAATTTTTCATTTCAAAGGCGGTCTGCGGCGACGGCTG
CTTCATTTTCGTCCCCCGTAAATTATTTCGGAGTGTTTTCGACATTTATG
GTGAAATGCGTGCATTGAACGGTGGAAAAGAAACAAGTGGTTGCTTGGTT
GTCACCAAGTTGCCAACCTGGTGTGACATAAAGGTTGTAATTTTTCGCGC
AACGTACACGTGGAAAAATGTGCCTTAACTTACAGCGACTGACGTTGGCA
TGCATGACTGAAAAAATCACAACCTACCTACGCGGGATACCTCCAGCCGC
GTGTGGCGTGCAGTGCGTGTCTTCACGAAACATTCAACCGTGATACCAGC
GTTCCACTTAGAAAAATATATAAACAAGTTTTCGTGTGCGCGTCCCGTTG
CAGTTTGTCGTGTTCGTATTGCGCGAAAACCCTATACTGATTCGCGCCTG
TCGGCCATGACTCGCCACCCAACTCGCCCGTTTTGTCGTCGATGTTGTGG
AATAGGGAAGTGCAACTCATAGAACCGTCGCAGCTGCTATCAGGCTATCA
GGTCAAGGACGACCTCCGAAAACGTTTCGAGTTTTCGTGGGATGGTGAGC
AAGAGAAGGCCTTGAACGCTGCTCAGCAAGTCGACGGTAGGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1273:13308..15151+

>mRNA_H-paniculata_contig1273.1719.1 ID=mRNA_H-paniculata_contig1273.1719.1|Name=mRNA_H-paniculata_contig1273.1719.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig1273:13308..15151+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATATAGGGACGACGGAGTTGAAGGCGAGCAAAACATACATCAGGTA
TGCTGCTGGGGCCTTCATTCGGTGGGCGACGAAGCACGGAATGAAGATGC
ACCCATCATTGGATGAGAAGAAGCTCAAACAATCGGGGCTAGGCACAGAT
GGATATAGGGACGACGGAGTTGAAGGCGAGCAAAACATACATCAGGTATG
CTGCTGGGGCCTTCATTCGGTGGGCGACGAAGCACGGAATGAAGATGCAC
CCATCATTGGATGAGAAGAAGCTCAAACAATCGGGGCTAGGCACAGGGGA
TAAAGTTGGCAGGACCTTCACCGACAAGTCTCTATACCTGGAGTTCCAGG
AAATTAGGAGAGTGGTCATAAGAGACATGGTTTCGCCGCCGAACAGGGGA
TAAAGTTGGCAGGACCTTCACCGACAAGTCTCTATACCTGGAGTTCCAGG
AAATTAGGAGAGTGGTCATAAGAGACATGGTTTCGCCGCCGAACAGGGAA
GTGCAACTCATAGAACCGTCGCAGCTGCTATCAGGCTATCAGGTCAAGGA
CGACCTCCGAAAACGTTTCGAGTTTTCGTGGGATGGTGAGCAAGAGAAGG
CCTTGAACGCTGCTCAGCAAGTCGACGGTAGGAGGGGAAGTGCAACTCAT
AGAACCGTCGCAGCTGCTATCAGGCTATCAGGTCAAGGACGACCTCCGAA
AACGTTTCGAGTTTTCGTGGGATGGTGAGCAAGAGAAGGCCTTGAACGCT
GCTCAGCAAGTCGACGGTAGGAGG
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