mRNA_H-paniculata_contig9400.17165.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9400.17165.1 vs. uniprot
Match: A0A6H5JWA0_9PHAE (SpoU_methylase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JWA0_9PHAE) HSP 1 Score: 213 bits (542), Expect = 3.970e-67 Identity = 117/190 (61.58%), Postives = 142/190 (74.74%), Query Frame = 1 Query: 25 MLNVVLFRPQIPSNTGNIGRTCLGFGARLHLIRPLGFELTEREVKRAGLDHWERVDLKVHDSWHDFAENVLPGIGHSN------VFLVSKQLKLGSRCIADVDFF---PRPSPSSSTP------LSPPRWTIPPSLKGGGGVALIFGNETEGLAGLEESAR-ICVPAVYLPMRDDLIRSYNLSNAVSGLV 546
ML+VVLFRP IP+NTGNIGRTCLGFGARLHL++PLGF+L+EREVKRAGLDHWE VDL VH+SW F E++LP + H+N ++LVSK+LKLGS IA+VDFF P+P P ++ P LS T+ S G V L+FGNE +GL+GLEE R +PAVYLPMRDD+IRSYNLSNAV+ V
Sbjct: 1 MLHVVLFRPLIPANTGNIGRTCLGFGARLHLVKPLGFDLSEREVKRAGLDHWEHVDLAVHNSWTCFTESMLPVLSHNNSGGGGNIYLVSKRLKLGSTPIAEVDFFAPTPKPPPIAAQPGGGAGELSSD--TVGSSACSQGDVTLVFGNEVDGLSGLEEGERGRALPAVYLPMRDDVIRSYNLSNAVAMAV 188
BLAST of mRNA_H-paniculata_contig9400.17165.1 vs. uniprot
Match: M2Y4W0_GALSU (tRNA/rRNA methyltransferase isoform 1 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y4W0_GALSU) HSP 1 Score: 122 bits (306), Expect = 2.740e-31 Identity = 74/171 (43.27%), Postives = 100/171 (58.48%), Query Frame = 1 Query: 28 LNVVLFRPQIPSNTGNIGRTCLGFGARLHLIRPLGFELTEREVKRAGLDHWERVDLKVHDSWHDFAENVLPGIGHSNVFLVSKQLKLGSRCIADVDFFPRPSPSSSTPLSPPRWTIPPSLKGGGGVALIFGNETEGLAGLEESARICVPAVYLPMRDD-LIRSYNLSNAVS 537
+NVVLF+P+IP NTGNIGRTCL FGA+LHLI PLGF + E V+RAGLD+W+ VD K W DF + V +S+++ ++ Q G+ + V F K G V LIFG+ETEG L A +VY+PM++ ++RS+NLSNAV+
Sbjct: 85 INVVLFQPKIPGNTGNIGRTCLAFGAKLHLIGPLGFSIDEHAVRRAGLDYWKYVDWKYSSCWEDFEKGVPE---NSHIYFITTQ---GTVSLERVTF-----------------------KTTGPVFLIFGSETEGFQQLPIKALDKGTSVYIPMQNKHIVRSHNLSNAVA 226
BLAST of mRNA_H-paniculata_contig9400.17165.1 vs. uniprot
Match: A0A6B2LL55_9EUKA (SpoU_methylase domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LL55_9EUKA) HSP 1 Score: 119 bits (297), Expect = 1.490e-30 Identity = 78/176 (44.32%), Postives = 99/176 (56.25%), Query Frame = 1 Query: 25 MLNVVLFRPQIPSNTGNIGRTCLGFGARLHLIRPLGFELTEREVKRAGLDHWERVDLKVHDSWHDFAENVLPGIGHSNVFLVSKQLKLGSRCIADVDFFPRPSPSSSTPLSPPRWTIPPSLKGGGGVALIFGNETEGL-AGLEESARICVPAVYLPM----RDDLIRSYNLSNAVS 537
ML+VVL RPQIP+NTG+IGRTCL F A+LHL+ PLGF L +VKRAGLD+W+ VDL V+D W F E + H F +SK GS + D F PSSS+ +P T L+FG+ET GL + E A P + LPM R S+NL++ VS
Sbjct: 1 MLHVVLVRPQIPTNTGSIGRTCLNFDAKLHLVGPLGFSLDSSKVKRAGLDYWQHVDLSVYDDWEHFEEKNRELLVHR--FYLSK---FGSTSLLDARF-----PSSSSGTTPRSTT------------LVFGSETSGLYETIGEKAMQGYPVISLPMLTAFRSKDTPSFNLASCVS 154
BLAST of mRNA_H-paniculata_contig9400.17165.1 vs. uniprot
Match: A0A2V3IEW0_9FLOR (Putative tRNA (Cytidine(34)-2'-O)-methyltransferase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEW0_9FLOR) HSP 1 Score: 120 bits (300), Expect = 2.430e-30 Identity = 69/175 (39.43%), Postives = 93/175 (53.14%), Query Frame = 1 Query: 22 KMLNVVLFRPQIPSNTGNIGRTCLGFGARLHLIRPLGFELTEREVKRAGLDHWERVDLKVHDSWHDFAENVLPGIGHSNVFLVSKQLKLGSRCIADVDFFPRPSPSSSTPLSPPRWTIPPSLKGGGGVALIFGNETEGLAGLEE---SARICVPAVYLPMRDDLIRSYNLSNAVS 537
K L+VV PQI NTGNIGRTCLG GA LHLI PLGF L E++V+RAGLD+W+ VD++V++ W FA + +G + +F K G RC +++++ R G L+FG+E G G+ + S V PM DD RS+NLS S
Sbjct: 73 KALHVVFVHPQIHWNTGNIGRTCLGLGAALHLIGPLGFSLDEKQVRRAGLDYWQHVDVRVYEDWAQFANGKMKQLGGTRLFFT----KFGDRCASEIEWNER-----------------------GKTVLVFGSEVHGFDGIRDWLHSEGKHEIRVAFPMVDDRFRSFNLSTTAS 220
BLAST of mRNA_H-paniculata_contig9400.17165.1 vs. uniprot
Match: A0A1X6NP17_PORUM (SpoU_methylase domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NP17_PORUM) HSP 1 Score: 114 bits (284), Expect = 8.370e-29 Identity = 67/177 (37.85%), Postives = 91/177 (51.41%), Query Frame = 1 Query: 25 MLNVVLFRPQIPSNTGNIGRTCLGFGARLHLIRPLGFELTEREVKRAGLDHWERVDLKVHDSWHDFAENVLPGIGHSNVFLVSKQLKLGSRCIADVDFFPRPSPSSSTPLSPPRWTIPPSLKGGGGVALIFGNETEG---LAGLEESARICVPAVYLPMRDDLIRSYNLSNAVSGLV 546
ML+VV PQIP NTGNIGRTCLG G RLHLI P+ F L+ V+RAGLD+W VD+ +H+SW F + VLPG+G D F+ + +P + + GV L+FG+E +G +AG E P + + D R++NLS + S V
Sbjct: 1 MLHVVFVSPQIPWNTGNIGRTCLGLGVRLHLIPPISFSLSAAAVRRAGLDYWWGVDVTIHESWATFRDEVLPGLG-------------------DAYFYTKHAPVTQVDVE---------YDDARGVVLLFGSEVDGFDSIAGEWEGVPDATPVAFPMVEGDRFRAFNLSTSASMAV 149
BLAST of mRNA_H-paniculata_contig9400.17165.1 vs. uniprot
Match: A0A6I6BJW5_9BACL (Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=11 Tax=Gemella TaxID=1378 RepID=A0A6I6BJW5_9BACL) HSP 1 Score: 113 bits (283), Expect = 9.470e-29 Identity = 69/174 (39.66%), Postives = 97/174 (55.75%), Query Frame = 1 Query: 25 MLNVVLFRPQIPSNTGNIGRTCLGFGARLHLIRPLGFELTEREVKRAGLDHWERVDLKVHDSWHDFAENVLPGIGHSNVFLVSKQLKLGSRCIADVDFFPRPSPSSSTPLSPPRWTIPPSLKGGGGVALIFGNETEGLAGLEESARICVPAVYLPMRDDLIRSYNLSNAVSGLV 546
M N+VLF+P+IP+NTGNI RTC+G RLHLIRPLGF + ++ VKRAGLD+WE +DL V DS+ +F E N +L++K G + +D DF S K + IFG ET+GL E + A+ +PM ++ +RS NLSN + ++
Sbjct: 1 MNNIVLFQPEIPANTGNIARTCVGTNTRLHLIRPLGFSIDDKHVKRAGLDYWEHLDLIVWDSFDEFLE----ATSDKNYYLITK---FGQKIYSDFDF---------------------SNKNDEEIYFIFGRETKGLP-KEFREKYSEQALRIPMSEN-VRSLNLSNTAALII 144
BLAST of mRNA_H-paniculata_contig9400.17165.1 vs. uniprot
Match: A0A7X6TWP8_CLOSP (Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Clostridium sp. TaxID=1506 RepID=A0A7X6TWP8_CLOSP) HSP 1 Score: 112 bits (281), Expect = 1.740e-28 Identity = 49/98 (50.00%), Postives = 77/98 (78.57%), Query Frame = 1 Query: 25 MLNVVLFRPQIPSNTGNIGRTCLGFGARLHLIRPLGFELTEREVKRAGLDHWERVDLKVHDSWHDFAENVLPGIGHSNVFLVSKQLKLGSRCIADVDF 318
MLN++LF+P+IP NTGNIGRTC+ G+RLHLI+PLGFE+++++++R GLD+W+ VDL+VH+SW DF +N P + VF ++ + G++C +D+ +
Sbjct: 1 MLNIILFQPEIPQNTGNIGRTCVLTGSRLHLIKPLGFEISDKQIRRTGLDYWKEVDLEVHESWEDF-KNKYP---EAAVFAITTK---GTQCYSDISY 91
BLAST of mRNA_H-paniculata_contig9400.17165.1 vs. uniprot
Match: A0A4Y9HHW6_9BACL (Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=2 Tax=unclassified Gemella TaxID=2624949 RepID=A0A4Y9HHW6_9BACL) HSP 1 Score: 111 bits (278), Expect = 5.340e-28 Identity = 70/174 (40.23%), Postives = 95/174 (54.60%), Query Frame = 1 Query: 25 MLNVVLFRPQIPSNTGNIGRTCLGFGARLHLIRPLGFELTEREVKRAGLDHWERVDLKVHDSWHDFAENVLPGIGHSNVFLVSKQLKLGSRCIADVDFFPRPSPSSSTPLSPPRWTIPPSLKGGGGVALIFGNETEGLAGLEESARICVPAVYLPMRDDLIRSYNLSNAVSGLV 546
M N+VLF+P+IP+NTGNI RTC+G RLHLI+PLGF + ++ VKRAGLD+W+ +DL V +S DF EN N FLV+K G + D DF S + + LIFG ET+GL E + + +PM D +RS NLSN + ++
Sbjct: 1 MNNIVLFQPEIPANTGNIARTCVGTNTRLHLIKPLGFSIDDKHVKRAGLDYWDNLDLVVWESMDDFLENTKD----KNYFLVTK---FGKQNYTDFDF---------------------SNQDNEDIYLIFGKETKGLPE-EFREKYKEQTLRIPMTDK-VRSLNLSNTAAMII 144
BLAST of mRNA_H-paniculata_contig9400.17165.1 vs. uniprot
Match: R7MA94_9CLOT (Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Clostridium sp. CAG:567 TaxID=1262820 RepID=R7MA94_9CLOT) HSP 1 Score: 111 bits (277), Expect = 9.680e-28 Identity = 66/174 (37.93%), Postives = 100/174 (57.47%), Query Frame = 1 Query: 28 LNVVLFRPQIPSNTGNIGRTCLGFGARLHLIRPLGFELTEREVKRAGLDHWERVDLKVHDSWHDFAENVLPGIGHSNVFLVSKQLKLGSRCIADVDFFPRPSPSSSTPLSPPRWTIPPSLKGGGGVALIFGNETEGLAGLEESARICVP-AVYLPMRDDLIRSYNLSNAVSGLV 546
LN+V+ P+IP NTGNI RT GA+LHL++PLGFE+T++ +KRAGLD+W+++D+++H+S F E P H+ F +K G +C +DVD+ V ++FG ET+GL EE + + + +PMR+ L RS NLSN+V+ +V
Sbjct: 3 LNIVMVEPEIPQNTGNIARTAAAIGAKLHLVKPLGFEITDKYLKRAGLDYWDKLDIEIHESLEMFLEKYKPE-EHAMYFATTK----GKQCYSDVDYTKSEE-----------------------VFILFGKETKGLP--EELLQKYIKNTIRIPMREHL-RSLNLSNSVAIVV 145
BLAST of mRNA_H-paniculata_contig9400.17165.1 vs. uniprot
Match: UPI001C045692 (tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL n=1 Tax=unclassified Gemella TaxID=2624949 RepID=UPI001C045692) HSP 1 Score: 109 bits (273), Expect = 3.010e-27 Identity = 69/172 (40.12%), Postives = 95/172 (55.23%), Query Frame = 1 Query: 25 MLNVVLFRPQIPSNTGNIGRTCLGFGARLHLIRPLGFELTEREVKRAGLDHWERVDLKVHDSWHDFAENVLPGIGHSNVFLVSKQLKLGSRCIADVDFFPRPSPSSSTPLSPPRWTIPPSLKGGGGVALIFGNETEGL-AGLEESARICVPAVYLPMRDDLIRSYNLSNAVS 537
M N+VLF+P+IP+NTGN+ RTC+G GARLHLI PLGF + ++ +KRAGLD+WE +DL + DS DF +N N FL++K GS ++ DF S + + IFG ET+GL A E + +P+ D +RS NLSN V+
Sbjct: 1 MNNIVLFQPEIPANTGNVARTCVGAGARLHLIMPLGFSIDDKHLKRAGLDYWEHLDLVIWDSLEDFLKNT----SDKNYFLITK---FGSETYSNFDF---------------------SNENNEELYFIFGRETKGLPASFREE--YYNKTLRIPITDK-VRSLNLSNTVA 141 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9400.17165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9400.17165.1 >prot_H-paniculata_contig9400.17165.1 ID=prot_H-paniculata_contig9400.17165.1|Name=mRNA_H-paniculata_contig9400.17165.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=175bp MLNVVLFRPQIPSNTGNIGRTCLGFGARLHLIRPLGFELTEREVKRAGLDback to top mRNA from alignment at H-paniculata_contig9400:301..3811- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9400.17165.1 ID=mRNA_H-paniculata_contig9400.17165.1|Name=mRNA_H-paniculata_contig9400.17165.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3511bp|location=Sequence derived from alignment at H-paniculata_contig9400:301..3811- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9400:301..3811- >mRNA_H-paniculata_contig9400.17165.1 ID=mRNA_H-paniculata_contig9400.17165.1|Name=mRNA_H-paniculata_contig9400.17165.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1050bp|location=Sequence derived from alignment at H-paniculata_contig9400:301..3811- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |