mRNA_H-paniculata_contig9400.17166.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9400.17166.1
Unique NamemRNA_H-paniculata_contig9400.17166.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9400.17166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9400contigH-paniculata_contig9400:4070..4709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size640
Cds size528
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931169.6529083-UTR-H-paniculata_contig9400:4069..41811622931169.6529083-UTR-H-paniculata_contig9400:4069..4181Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9400 4070..4181 +
1691481621.8437822-UTR-H-paniculata_contig9400:4069..41811691481621.8437822-UTR-H-paniculata_contig9400:4069..4181Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9400 4070..4181 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931169.6681225-CDS-H-paniculata_contig9400:4181..47091622931169.6681225-CDS-H-paniculata_contig9400:4181..4709Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9400 4182..4709 +
1691481621.8556917-CDS-H-paniculata_contig9400:4181..47091691481621.8556917-CDS-H-paniculata_contig9400:4181..4709Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9400 4182..4709 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9400.17166.1prot_H-paniculata_contig9400.17166.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9400 4182..4709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9400.17166.1

>prot_H-paniculata_contig9400.17166.1 ID=prot_H-paniculata_contig9400.17166.1|Name=mRNA_H-paniculata_contig9400.17166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=176bp
MWRSLARVRVVVSCTATATPKDEVMTPPSVSLLFPADVSLKPLSFFGRRE
TSNITPSGLGDYNNLSPSPRVLDAAKRGREQHLFGNTFGCGGYSIGSIGR
EGASRVPRSGIPCDAAAASFHNISTGFPRMSSGSGKRTSSGGAYNSVGMA
VCCAAAAGYMSGVSCAGSPEPTSPTE
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mRNA from alignment at H-paniculata_contig9400:4070..4709+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9400.17166.1 ID=mRNA_H-paniculata_contig9400.17166.1|Name=mRNA_H-paniculata_contig9400.17166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=640bp|location=Sequence derived from alignment at H-paniculata_contig9400:4070..4709+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGATAGTACCCCGCAGACAGACTGTGGATCGTACGGCACTATACTGACTG
CACTGTATAGCGTTATTTTGCCCTCCCTCCACTGAAAGGTGGGGAGGATT
TACTCGTGGAAGATGTGGAGAAGCCTCGCACGAGTACGTGTCGTGGTGTC
ATGTACGGCAACGGCGACACCCAAAGATGAAGTGATGACTCCACCGTCCG
TATCATTGTTGTTCCCCGCAGATGTAAGTCTAAAACCGCTGAGTTTTTTT
GGACGACGCGAAACGAGCAACATTACACCATCAGGACTTGGTGATTACAA
CAACCTATCGCCATCCCCTCGCGTACTCGATGCTGCAAAGCGGGGGCGAG
AACAACATCTTTTTGGGAATACTTTCGGGTGTGGTGGATACTCCATAGGG
AGCATTGGTCGCGAAGGCGCTTCTCGGGTGCCACGATCCGGCATCCCATG
CGATGCAGCTGCTGCTTCATTCCATAACATCAGTACTGGATTTCCAAGGA
TGAGCAGTGGAAGTGGGAAAAGAACCAGCAGCGGTGGAGCCTATAACTCA
GTAGGCATGGCAGTGTGCTGCGCAGCGGCAGCAGGATATATGTCTGGCGT
GTCATGTGCAGGTTCTCCCGAACCCACATCACCAACCGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig9400:4070..4709+

>mRNA_H-paniculata_contig9400.17166.1 ID=mRNA_H-paniculata_contig9400.17166.1|Name=mRNA_H-paniculata_contig9400.17166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1056bp|location=Sequence derived from alignment at H-paniculata_contig9400:4070..4709+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGAGAAGCCTCGCACGAGTACGTGTCGTGGTGTCATGTACGGCAAC
GGCGACACCCAAAGATGAAGTGATGACTCCACCGTCCGTATCATTGTTGT
TCCCCGCAGATGTAAGTCTAAAACCGCTGAGTTTTTTTGGACGACGCGAA
ACGAGCAACATTACACCATCAGGACTTGGTGATTACAACAACCTATCGCC
ATCCCCTCGCGTACTCGATGCTGCAAAGCGGGGGCGAGAACAACATCTTT
TTGGGAATACTTTCGGGTGTGGTGGATACTCCATAGGGAGCATTGGTCGC
GAAGGCGCTTCTCGGGTGCCACGATCCGGCATCCCATGCGATGCAGCTGC
TGCTTCATTCCATAACATCAGTACTGGATTTCCAAGGATGAGCAGTGGAA
GTGGGAAAAGAACCAGCAGCGGTGGAGCCTATAACTCAGTAGGCATGGCA
GTGTGCTGCGCAGCGGCAGCAGGATATATGTCTGGCGTGTCATGTGCAGG
TTCTCCCGAACCCACATCACCAACCGAGATGTGGAGAAGCCTCGCACGAG
TACGTGTCGTGGTGTCATGTACGGCAACGGCGACACCCAAAGATGAAGTG
ATGACTCCACCGTCCGTATCATTGTTGTTCCCCGCAGATGTAAGTCTAAA
ACCGCTGAGTTTTTTTGGACGACGCGAAACGAGCAACATTACACCATCAG
GACTTGGTGATTACAACAACCTATCGCCATCCCCTCGCGTACTCGATGCT
GCAAAGCGGGGGCGAGAACAACATCTTTTTGGGAATACTTTCGGGTGTGG
TGGATACTCCATAGGGAGCATTGGTCGCGAAGGCGCTTCTCGGGTGCCAC
GATCCGGCATCCCATGCGATGCAGCTGCTGCTTCATTCCATAACATCAGT
ACTGGATTTCCAAGGATGAGCAGTGGAAGTGGGAAAAGAACCAGCAGCGG
TGGAGCCTATAACTCAGTAGGCATGGCAGTGTGCTGCGCAGCGGCAGCAG
GATATATGTCTGGCGTGTCATGTGCAGGTTCTCCCGAACCCACATCACCA
ACCGAG
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