mRNA_H-paniculata_contig940.17163.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig940.17163.1
Unique NamemRNA_H-paniculata_contig940.17163.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig940.17163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig940contigH-paniculata_contig940:3148..3857 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size710
Cds size618
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931169.2236116-UTR-H-paniculata_contig940:3147..32391622931169.2236116-UTR-H-paniculata_contig940:3147..3239Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig940 3148..3239 +
1691481621.6135838-UTR-H-paniculata_contig940:3147..32391691481621.6135838-UTR-H-paniculata_contig940:3147..3239Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig940 3148..3239 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931169.2441974-CDS-H-paniculata_contig940:3239..38571622931169.2441974-CDS-H-paniculata_contig940:3239..3857Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig940 3240..3857 +
1691481621.6269026-CDS-H-paniculata_contig940:3239..38571691481621.6269026-CDS-H-paniculata_contig940:3239..3857Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig940 3240..3857 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig940.17163.1prot_H-paniculata_contig940.17163.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig940 3240..3857 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig940.17163.1

>prot_H-paniculata_contig940.17163.1 ID=prot_H-paniculata_contig940.17163.1|Name=mRNA_H-paniculata_contig940.17163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=206bp
MALLPSALSNVLPPFILETHAVEIKATTVTHLGPCSVSLSPLQTHDLISY
VDTFTQMQPSTVTQETSVTLIRHVQAIVVSYSPALLLVKKSTRLFCGWPT
LPDIGDLHIDNHEKKKKSPSRPVLEDRLDRQNLVHMGRGPDTNTTSLSGV
HPKGTQAANTAATPPQKLSRPHAQHLYPPSPPNTLVPRALCSYFTTLVDY
QFPESD
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mRNA from alignment at H-paniculata_contig940:3148..3857+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig940.17163.1 ID=mRNA_H-paniculata_contig940.17163.1|Name=mRNA_H-paniculata_contig940.17163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=710bp|location=Sequence derived from alignment at H-paniculata_contig940:3148..3857+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCTGACCCTGCGGAAACCAACCGCTATCCGAGGTTCAACCGCATCACA
CCACCGTGGACGCTCCCTCCAGATTAGCTGTCTTTTTTTTTCATGGCACT
GCTACCATCAGCACTGTCTAATGTGTTACCCCCCTTCATTCTCGAGACGC
ATGCAGTGGAGATCAAAGCAACAACAGTAACGCATCTAGGCCCTTGCTCC
GTGTCTCTCTCCCCACTACAAACTCATGATTTGATATCCTACGTTGATAC
TTTTACCCAAATGCAGCCGTCGACCGTCACTCAAGAAACCTCAGTAACAC
TCATTCGTCATGTGCAGGCGATTGTAGTTAGTTACTCGCCAGCTCTCCTC
TTAGTAAAAAAAAGCACGCGCTTGTTTTGCGGTTGGCCAACTCTCCCCGA
TATCGGGGATTTGCACATCGACAACCACGAAAAAAAAAAAAAATCACCAA
GCCGACCCGTGCTCGAGGATCGATTAGACAGGCAAAACCTTGTGCACATG
GGCAGAGGGCCTGACACCAACACGACATCATTATCCGGCGTTCACCCCAA
AGGCACACAAGCGGCAAATACAGCAGCCACACCCCCGCAAAAATTGTCCC
GACCACACGCCCAACACCTATACCCGCCGAGCCCACCGAACACTCTAGTA
CCACGTGCCTTATGCTCGTATTTCACCACCCTGGTCGATTATCAATTCCC
TGAGAGCGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig940:3148..3857+

>mRNA_H-paniculata_contig940.17163.1 ID=mRNA_H-paniculata_contig940.17163.1|Name=mRNA_H-paniculata_contig940.17163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1236bp|location=Sequence derived from alignment at H-paniculata_contig940:3148..3857+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCACTGCTACCATCAGCACTGTCTAATGTGTTACCCCCCTTCATTCT
CGAGACGCATGCAGTGGAGATCAAAGCAACAACAGTAACGCATCTAGGCC
CTTGCTCCGTGTCTCTCTCCCCACTACAAACTCATGATTTGATATCCTAC
GTTGATACTTTTACCCAAATGCAGCCGTCGACCGTCACTCAAGAAACCTC
AGTAACACTCATTCGTCATGTGCAGGCGATTGTAGTTAGTTACTCGCCAG
CTCTCCTCTTAGTAAAAAAAAGCACGCGCTTGTTTTGCGGTTGGCCAACT
CTCCCCGATATCGGGGATTTGCACATCGACAACCACGAAAAAAAAAAAAA
ATCACCAAGCCGACCCGTGCTCGAGGATCGATTAGACAGGCAAAACCTTG
TGCACATGGGCAGAGGGCCTGACACCAACACGACATCATTATCCGGCGTT
CACCCCAAAGGCACACAAGCGGCAAATACAGCAGCCACACCCCCGCAAAA
ATTGTCCCGACCACACGCCCAACACCTATACCCGCCGAGCCCACCGAACA
CTCTAGTACCACGTGCCTTATGCTCGTATTTCACCACCCTGGTCGATTAT
CAATTCCCTGAGAGCGACATGGCACTGCTACCATCAGCACTGTCTAATGT
GTTACCCCCCTTCATTCTCGAGACGCATGCAGTGGAGATCAAAGCAACAA
CAGTAACGCATCTAGGCCCTTGCTCCGTGTCTCTCTCCCCACTACAAACT
CATGATTTGATATCCTACGTTGATACTTTTACCCAAATGCAGCCGTCGAC
CGTCACTCAAGAAACCTCAGTAACACTCATTCGTCATGTGCAGGCGATTG
TAGTTAGTTACTCGCCAGCTCTCCTCTTAGTAAAAAAAAGCACGCGCTTG
TTTTGCGGTTGGCCAACTCTCCCCGATATCGGGGATTTGCACATCGACAA
CCACGAAAAAAAAAAAAAATCACCAAGCCGACCCGTGCTCGAGGATCGAT
TAGACAGGCAAAACCTTGTGCACATGGGCAGAGGGCCTGACACCAACACG
ACATCATTATCCGGCGTTCACCCCAAAGGCACACAAGCGGCAAATACAGC
AGCCACACCCCCGCAAAAATTGTCCCGACCACACGCCCAACACCTATACC
CGCCGAGCCCACCGAACACTCTAGTACCACGTGCCTTATGCTCGTATTTC
ACCACCCTGGTCGATTATCAATTCCCTGAGAGCGAC
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