mRNA_H-paniculata_contig9398.17159.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9398.17159.1
Unique NamemRNA_H-paniculata_contig9398.17159.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig9398.17159.1 vs. uniprot
Match: D8LLP2_ECTSI (Protein cereblon n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLP2_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 4.140e-21
Identity = 76/178 (42.70%), Postives = 88/178 (49.44%), Query Frame = 1 
Query:   88 HLGVVNGMSWNHDGS-ASIVGVGTAAEVRWRH------EDGGEEGYLHQSVAVMARGRHRFRLLDCRGIMRGDVWYYKVVICPDLCPPAPLRAPVPRLLRDMTSGDKNGSMGSMNCRKREYGCVGGGSGEEGRRAAKEAGRRGSCRHWVMSIPRFVVAINSPDALAARAGHLLREARE 600
            HLGVVN +     G       VGT AEVR  H       DGG E      +A+MARGRHRFRL++  G  RG V Y+KVVICPD CP    R PVPR  R+    D+ G                       RR  ++ G      HW M++PRF V  NSP  LAARA  LLRE RE
Sbjct:  138 HLGVVNRLDSRRGGPHVGASPVGTTAEVRSGHGGSAEDADGGGEXXXXGGLAMMARGRHRFRLVEDLGWRRG-VLYWKVVICPDHCP-GTFRPPVPRAFREFPGTDRRG-----------------------RRRRRDGGN-----HWPMAVPRFAVVANSPAVLAARAASLLREQRE 285
[Close]
BLAST of mRNA_H-paniculata_contig9398.17159.1 vs. uniprot
Match: A0A6H5KP54_9PHAE (CULT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP54_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.940e-15
Identity = 74/178 (41.57%), Postives = 85/178 (47.75%), Query Frame = 1 
Query:   88 HLGVVNGM-SWNHDGSASIVGVGTAAEVR----WRHED--GGEEGYLHQSVAVMARGRHRFRLLDCRGIMRGDVWYYKVVICPDLCPPAPLRAPVPRLLRDMTSGDKNGSMGSMNCRKREYGCVGGGSGEEGRRAAKEAGRRGSCRHWVMSIPRFVVAINSPDALAARAGHLLREARE 600
            HLGVVN + S               AEVR       ED  GG EG     +A+MARGRHRFRL++  G  RG V Y+KVVIC D CP    + PVPR  R+                         G+G  GRR      RR    HW M++PRF V  NSP  LAARA  LLRE RE
Sbjct:  197 HLGVVNRLDSRXXXXXXXXXXXXXXAEVRSGXXXSAEDAAGGGEGGDGGGLAMMARGRHRFRLVEDLGWRRG-VRYWKVVICSDHCP-GTFQPPVPRAFREFP-----------------------GTGRRGRR------RRDGGNHWTMAVPRFAVVANSPAVLAARAASLLREQRE 343
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9398.17159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLP2_ECTSI4.140e-2142.70Protein cereblon n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A6H5KP54_9PHAE1.940e-1541.57CULT domain-containing protein n=1 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9398contigH-paniculata_contig9398:2689..8327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue2e-20
Seed eggNOG ortholog2880.D8LLP2
Preferred nameCRBN
KEGG koko:K11793
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0007423,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009653,GO:0009790,GO:0009887,GO:0009888,GO:0009987,GO:0010498,GO:0016567,GO:0019538,GO:0019941,GO:0030163,GO:0031333,GO:0031461,GO:0031464,GO:0031974,GO:0031981,GO:0032092,GO:0032446,GO:0032459,GO:0032460,GO:0032462,GO:0032463,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0033333,GO:0033334,GO:0033339,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0035107,GO:0035113,GO:0035118,GO:0035138,GO:0035239,GO:0035295,GO:0036211,GO:0042471,GO:0042472,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043269,GO:0043271,GO:0043393,GO:0043412,GO:0043496,GO:0043583,GO:0043632,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0048513,GO:0048519,GO:0048523,GO:0048562,GO:0048568,GO:0048598,GO:0048729,GO:0048731,GO:0048736,GO:0048839,GO:0048856,GO:0050789,GO:0050794,GO:0051049,GO:0051051,GO:0051098,GO:0051099,GO:0051128,GO:0051129,GO:0051603,GO:0060173,GO:0060429,GO:0060562,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0071599,GO:0071600,GO:0071704,GO:0080008,GO:0090073,GO:0090596,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
EggNOG free text desc.proteasome-mediated ubiquitin-dependent protein catabolic process
EggNOG OGsKOG1400@1,KOG1400@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons4
Model size2046
Cds size1194
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9398.17159.1prot_H-paniculata_contig9398.17159.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9398 2797..7549 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931167.793733-UTR-H-paniculata_contig9398:2688..27961622931167.793733-UTR-H-paniculata_contig9398:2688..2796Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9398 2689..2796 +
1691481620.8714695-UTR-H-paniculata_contig9398:2688..27961691481620.8714695-UTR-H-paniculata_contig9398:2688..2796Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9398 2689..2796 +
1622931167.8804464-UTR-H-paniculata_contig9398:7549..76961622931167.8804464-UTR-H-paniculata_contig9398:7549..7696Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9398 7550..7696 +
1691481620.9182942-UTR-H-paniculata_contig9398:7549..76961691481620.9182942-UTR-H-paniculata_contig9398:7549..7696Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9398 7550..7696 +
1622931167.8958402-UTR-H-paniculata_contig9398:7730..83271622931167.8958402-UTR-H-paniculata_contig9398:7730..8327Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9398 7731..8327 +
1691481620.9277072-UTR-H-paniculata_contig9398:7730..83271691481620.9277072-UTR-H-paniculata_contig9398:7730..8327Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9398 7731..8327 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931167.8237526-CDS-H-paniculata_contig9398:2796..28161622931167.8237526-CDS-H-paniculata_contig9398:2796..2816Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9398 2797..2816 +
1691481620.8847816-CDS-H-paniculata_contig9398:2796..28161691481620.8847816-CDS-H-paniculata_contig9398:2796..2816Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9398 2797..2816 +
1622931167.8423884-CDS-H-paniculata_contig9398:3951..41011622931167.8423884-CDS-H-paniculata_contig9398:3951..4101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9398 3952..4101 +
1691481620.9001305-CDS-H-paniculata_contig9398:3951..41011691481620.9001305-CDS-H-paniculata_contig9398:3951..4101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9398 3952..4101 +
1622931167.8634496-CDS-H-paniculata_contig9398:6525..75491622931167.8634496-CDS-H-paniculata_contig9398:6525..7549Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9398 6526..7549 +
1691481620.9082916-CDS-H-paniculata_contig9398:6525..75491691481620.9082916-CDS-H-paniculata_contig9398:6525..7549Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9398 6526..7549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9398.17159.1

>prot_H-paniculata_contig9398.17159.1 ID=prot_H-paniculata_contig9398.17159.1|Name=mRNA_H-paniculata_contig9398.17159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=398bp
MSWNHDGSASIVGVGTAAEVRWRHEDGGEEGYLHQSVAVMARGRHRFRLL
DCRGIMRGDVWYYKVVICPDLCPPAPLRAPVPRLLRDMTSGDKNGSMGSM
NCRKREYGCVGGGSGEEGRRAAKEAGRRGSCRHWVMSIPRFVVAINSPDA
LAARAGHLLREARESPRLQPSATNAHPAAVAVGPLAMVNADEVSALGSAT
NGTEEGGERRRSSRATMERFLAALERGFYRSDGGNGDAGTGAGAERREIT
GGGSGAPVARAVAPRATVGEVAAGRAGHGSVVVNEVLEERGGGGVDGTGA
RSNERNETSYPAVGGDMEGDEEGWRHGGVGTGYGGGEEGNEGQVGRRKPD
PTHFSFWLAANLPLDDSARQELLDMDSVVSRLRLDVSGRSRVVAFRL*
back to top

mRNA from alignment at H-paniculata_contig9398:2689..8327+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9398.17159.1 ID=mRNA_H-paniculata_contig9398.17159.1|Name=mRNA_H-paniculata_contig9398.17159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5639bp|location=Sequence derived from alignment at H-paniculata_contig9398:2689..8327+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGGGGGGCGGAAGGCAGGGCGGGGCGCGCGGCAAATCGGCGGGATTG
GCAGGATACGGGAATAAGTTCGGCCATTGGATGCGGGCATCTGGGAGTGG
TGAATGGGATGTCTTGGAACCATGACGGGTGAGAGAACAACTGTTGTTTT
TTTCAGCCTGTGGATTGATTCACCTTTTGTTTTTGGCGCTCCTCCATATT
CATAGCTTAGCCTGTATGTAGTAGCCATAGCTGAGCGGGCTCCAGCTGCG
CACTCTCCGGGATTCGCTTTCGCGTGCCGGACAGACATAAAGACCCCTGC
GCTGCACGTCCTCGAGGTGATTGATCCTCAGCACCCACTATCCACATACT
GGCTTGCACCAGCCGACGTGTATTCTTCGTATGTATGGTATCACTCATAG
TGCATGGCATCCTTGGTTGAGCTCATGCCGGGGGTAATGTACCAAGCTGT
TCTCGGTGGCGTGGTGTATTTTATGTTGGAGAGGGTGGCTTATGGCGATT
CGAAATTCGCCCGTACCGAAAAAAAGAAGAAAAACGTGAGCGCGCGCCGT
TCTGCATTGTCCTGTACTGTACAATACTGTATCAGCAGTATAATAGTATA
ATAGTATAATGGTGTCCTTGTTTTCGTTGTCGCTGCGATCGAAGAAGACC
TGTGCACAAACTCCACCTGACTTTTTGTACGACCTCGCATTTTTGGTAGC
ATGTTGTAATATCGATTTTAAGGTGGGCAGGGGAATGACTAAAAGAAAGG
AAAAAAAACGTAACTGAAGAGTAACGCGCAACTCATTTGGGAATTTGTAT
CTTTGTGCTGCAGGAGCAGTAGCTTTGTTTTTGAGTCACTCAAGACGAAA
CAAAAAAAAAAGGAGAAAAGAGCTCGTCGATGGATGGATGGTGAGCCGTA
AATGACTTGGTCGCGCAGGAGGAGCTCAAAAGTAAAGTGAAATAGAACTG
CCTATGGTTGATTTATGGAGAGGGGCACCGATGGATGATGACATACGAGT
CGGTAGCTAGCCTAAAAATTACGCGGAAAACGACACCGTTTGGTGCATAT
GTGATTTTTATAACGCGCTCATCTCTGTTGGACGCGTGTGCACGCGCAAG
CCGTGTGTGTGTATGTGTGTATGCTTCATTTTGGTATGTAGAGCCTGCGG
CTTTATTTATCGTGGACGATGTTTCGTTGCTGACCAATTTGCCCGATTGT
CGAACATGAAAACAAGCAAAAGAGCCACGGAGTTCGATTGTACAACTTGT
TGGAAAAAAACAGATCAGCCTCGATTGTGGGGGTGGGTACCGCCGCCGAG
GTTCGTTGGCGTCACGAGGACGGCGGCGAAGAAGGATACTTGCATCAAAG
TGTGGCCGTCATGGCCCGCGGTCGTCACCGGTTCCGGTTGTTGGATTGCC
GTGGAATCATGAGGTGGGTGGGTGGGTGGGTGGATGAGTTGGTTGGGAGT
AGGACTATTGTAGGAGGGAGGGGGGGGACTGTGTAACGAGAGCTGCTTCG
CAAAGCGGCTCAACAAATTTCTAATGAAATAGTATCCAATGGTATGCGTT
CAAGCGTCCCCGAAGGTGCAGAAATTACGATTCAGAATGACCATGCTGTT
ATTGTTTGAAGTGGAAATAAATACGTTGCCTACCCGCTTTGCAAAGCGAC
CCAAAAACACTTGAACCATGCACGTGGAGTGCGACAAGCAGCTTCGAGGA
CGGAGGGGCTGTGACAATAATAGAGCGAAATCGACGAGCGCCTTGCGAAC
GCCCCCCCTATGTACAACAACCAACCACCTCTCCTTTCCTTCTTCAGTTA
TGTTACTTGGACTTACTGGGAGACTGTTTTAGCTCGGGGAACGTTTCTTA
CGTACGTCGTTGGTTTGTAGAGAGTCGCGCTATTTCGCAATTGTTTCGAT
TCTAATGTAGCTGCGTATGGGGCCAAGGGTCAAAAGGACAGAAGAAAGCA
TATACATGGAAGGCGACGAGCAGCTTCGAGAACTGAGGGACTGTAATGAT
AGTATAGGGGCGAGGTTGACGAGCGCCTTGCGTACGCTCCCCCTGCATAT
TCTAACCATCTGCCTCTCTCTCCCCGATTTCCCAACCCGTGTGTTAAATT
AATAGTCTCTAGTCTCCCCCGAGGACTTAGAATGCTGCTTTGGCTTACAG
CACTCCCCTTACGGAACTGTGACAAGGCGGGTAGAGAGCGCCTGACCGTG
TATCTGCTAGAAGTATGTGGGTATATAGGTAGCCACTCCCGAGTTTGTGT
TTCTGATGTCGTTCGTTACTTCATGCGTGTGTCGAAGGGTAGGCCTGCTC
CTTGAATTCTTCTCTGTAACCGGGGATGGGTTACAGTAACAGTTGCGTGT
AGCTAAAGTAGCAGGTTGGACCCACTGCTGTTTCTGGGGATAACTCTTCT
AACTTGTTGAAAACAAATGTTGCATTCAAAGGATAAATATCCAAAACATA
TGAAGGAAAAGCACCAACATATTGGTTTGAGGACACATCAAGATGGATGT
ATATATATATATATATTGGGAATGTATATGCGATCGATATATAGCCCTGT
AAAGAACAAGCCGGTCAAGCGCTGTTTTTTCGACAGATCTACTACGCCTT
GGCTCCCCCTCATTTTTCTTTTGAAAATGACAAGGTTTTTGCCTTGTATA
TTTTCGACCATTTATTGTTTAATCTTTTTTTTTTTCTTTTTTTCCTTCTT
GCTCCTATTAATAGCTGGTGTCACTGTCCTCACAGATGGACCTATGTATA
TTGACCTACATACGCACTACAGTACTGACAAAACAGTAATTTTTTTTGTT
CCCTGTTTGTAATCGTTGCCCGGAATTAAGTGTTCCCTGCGACCTGTGAA
AATTTTATTTACACGAAGAGAAACGCGGAGTTTTTCGTTTTGAGGTACGT
GAAAAATGATTGTAGTGTCGTTGTTTTTTTTTTCCCCGACGAAACACGTG
TAAATGGAAGAAAATAAAGAAGGTAGAATAGGAAGCTTATATAGGTTTGA
GTTCACAGGTTGCAAAGCAGCTCTCGAAAACTAGCAAGGCATGCAAGGGG
GGTAGTACATCAGTTTATGTCGAGCCTAGCGAAGAGGGTGACGGGGAAGT
AATCCGCCGCGGTGACGAAAATAGCACAAGCCCTCACGTCAGGTTAACCG
TGCCCGCCAAGAAGCAAAGTGCTGAGGGTGATCCTATGTTGCCGTTGCGT
GGTATAGGATCCTGGCGTCCTCGTTCGCTTTCTGTTGTGTGTGGTAAACA
AAAATTATGTGGCGGCGAAAAGAAATTTCGTCAAATCTTAATTTTATTCT
ACCGCCTCGGACTTCCTGAATGCTTTACCCACATGAGACCCGACCGTGAA
TTTGAATGCGACCGTGATTCTCAGTGAAGTAAAGTTTCTTTCGAATTCAT
CCCGAAAACAAAGCGCACGTTTTTTCCCGTGCTGCGATTCTGAATAAGGC
AAGGTTTCTTTGCAATGCATCCTGAAGGTAATACATACGCCCATCCCAAT
TTGGAGCACCCGCTAGTCCAGCACCAAGTTCAACGCAAGGCAGGGTATGT
CGTCTTCACGCTCGCTCTGACTTCCATAATTGTTTTTACATCGTATTCCA
GCACCATTTTACTACGCTTCGCGTCCACTTTTGGGAGGGATGGCAGGGGG
GAGGGGGGGAATGGGAAAGCGTAGTCGTACCTGTGTTATACAATTTTTGT
CACAATCCCTCGTCCTTCTTTCGTATACGTAGTACTCACATTCTGAAGCT
ATATACCCAGTACTTACAGTCTATAATCATGTCTTAAGATACCCTTTCCC
CTCCTCCCGCCCTCCGCCCCCCGTCCGAGGAGAACAGAGGCGACGTGTGG
TATTACAAGGTGGTCATCTGCCCGGACCTTTGTCCGCCTGCCCCTTTGCG
AGCTCCCGTACCTCGGCTGTTGCGCGACATGACCAGCGGAGACAAAAACG
GTAGCATGGGCAGCATGAACTGTAGAAAGCGCGAATATGGGTGCGTAGGC
GGCGGCAGCGGTGAGGAGGGCAGGCGGGCGGCAAAGGAGGCAGGGAGAAG
AGGTTCGTGCCGTCACTGGGTAATGTCAATCCCGCGGTTCGTCGTGGCCA
TTAACTCTCCCGACGCGCTCGCAGCGAGAGCTGGTCACCTCCTTCGGGAA
GCGCGGGAGTCGCCCAGACTCCAGCCGTCAGCTACCAACGCTCATCCAGC
AGCGGTGGCAGTAGGTCCGTTGGCGATGGTGAATGCGGATGAGGTATCGG
CATTGGGCTCGGCGACGAACGGTACCGAGGAGGGTGGGGAGCGGAGACGG
TCGAGCAGAGCGACAATGGAGAGGTTCCTAGCAGCGCTCGAGCGGGGTTT
TTACCGCAGCGATGGTGGTAATGGTGATGCTGGTACTGGTGCTGGTGCTG
AGAGGAGAGAAATAACTGGGGGCGGTAGTGGAGCTCCAGTTGCGAGGGCT
GTTGCACCACGGGCAACCGTTGGAGAAGTAGCCGCAGGACGGGCGGGGCA
TGGGAGTGTCGTGGTAAACGAGGTGCTGGAGGAAAGGGGTGGTGGAGGTG
TTGACGGCACCGGTGCTAGGAGTAATGAGAGGAACGAGACCTCGTATCCC
GCAGTAGGAGGTGATATGGAAGGGGACGAAGAGGGTTGGCGGCACGGCGG
GGTCGGCACCGGGTATGGAGGAGGAGAAGAAGGCAACGAGGGGCAGGTTG
GGCGTAGAAAGCCGGACCCAACGCATTTTTCGTTTTGGCTGGCCGCTAAC
CTTCCCCTCGATGACAGCGCGCGGCAGGAGCTTCTGGACATGGATTCGGT
GGTCTCGCGGCTCAGGTTAGACGTTAGCGGTAGATCCAGAGTGGTTGCTT
TTCGGTTATAAAGGGGTTTAGCTCTTTTGGTGGGATCGAAAGTTTAGGTG
CTACAACGGAAGTGTGTGCCCCCGAGAGGTGGGTATGTCGGGGTCGGACA
GTCCGACGTCTCCCGCCTCACCCTATATATGTGCAAACTCCCCTCCAAAA
ACACCATAGTCTACTTAACGTCTCATGAATCAGAATTGCTAGTTAACCTC
CAGGTATTGCATAACCGATTGGTATTAATGAACTATTTGTAGTACCAAAC
ACAGAATTCATTTTTCGTGGGTCTCGTCTGTTAGCATCATACCTGTACCT
GTTATTGGATGATGTACATACCGTTTTGTCCAGACGTTTACAGGTGGTAT
CCAGGTAACGTACAAGTCAATGAAAACGGTACACTAAGCATGCATCCTGA
TAATTGATGTATACTCACCACGTATCATAGTACTTTTTCTTGTATCTAAC
GAGAAAGTGCAGTAGCAGAGTAGTATGGTCAATATGTCACAAAACGACGC
ATAATAATACAACATTCAGGGTATATAATATATATGTTCACATTTTGTAA
CAGCTACGGTGGTAACGATCTCCGAAATTTTTTGTTATACTAAACAATAT
ATAGTGCTCCTTTGTAAATGGTGAAGTCGAGAGCTACATTGCTAGCAAGA
GCTCAATCTTATTCAAGGGTGCACGGGGTGCAGGGTGCAGGGGCTTGCTC
GTCCCCGAAAAAATGTTAAATTGAGTTTTTTTTTTCCCAAGTCATCAGAA
GCGTGATGATCAATATATCCGGTGGTAATGCCACCCTTC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig9398:2689..8327+

>mRNA_H-paniculata_contig9398.17159.1 ID=mRNA_H-paniculata_contig9398.17159.1|Name=mRNA_H-paniculata_contig9398.17159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2388bp|location=Sequence derived from alignment at H-paniculata_contig9398:2689..8327+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTTGGAACCATGACGGATGTCTTGGAACCATGACGGATCAGCCTCG
ATTGTGGGGGTGGGTACCGCCGCCGAGGTTCGTTGGCGTCACGAGGACGG
CGGCGAAGAAGGATACTTGCATCAAAGTGTGGCCGTCATGGCCCGCGGTC
GTCACCGGTTCCGGTTGTTGGATTGCCGTGGAATCATGAGATCAGCCTCG
ATTGTGGGGGTGGGTACCGCCGCCGAGGTTCGTTGGCGTCACGAGGACGG
CGGCGAAGAAGGATACTTGCATCAAAGTGTGGCCGTCATGGCCCGCGGTC
GTCACCGGTTCCGGTTGTTGGATTGCCGTGGAATCATGAGAGGCGACGTG
TGGTATTACAAGGTGGTCATCTGCCCGGACCTTTGTCCGCCTGCCCCTTT
GCGAGCTCCCGTACCTCGGCTGTTGCGCGACATGACCAGCGGAGACAAAA
ACGGTAGCATGGGCAGCATGAACTGTAGAAAGCGCGAATATGGGTGCGTA
GGCGGCGGCAGCGGTGAGGAGGGCAGGCGGGCGGCAAAGGAGGCAGGGAG
AAGAGGTTCGTGCCGTCACTGGGTAATGTCAATCCCGCGGTTCGTCGTGG
CCATTAACTCTCCCGACGCGCTCGCAGCGAGAGCTGGTCACCTCCTTCGG
GAAGCGCGGGAGTCGCCCAGACTCCAGCCGTCAGCTACCAACGCTCATCC
AGCAGCGGTGGCAGTAGGTCCGTTGGCGATGGTGAATGCGGATGAGGTAT
CGGCATTGGGCTCGGCGACGAACGGTACCGAGGAGGGTGGGGAGCGGAGA
CGGTCGAGCAGAGCGACAATGGAGAGGTTCCTAGCAGCGCTCGAGCGGGG
TTTTTACCGCAGCGATGGTGGTAATGGTGATGCTGGTACTGGTGCTGGTG
CTGAGAGGAGAGAAATAACTGGGGGCGGTAGTGGAGCTCCAGTTGCGAGG
GCTGTTGCACCACGGGCAACCGTTGGAGAAGTAGCCGCAGGACGGGCGGG
GCATGGGAGTGTCGTGGTAAACGAGGTGCTGGAGGAAAGGGGTGGTGGAG
GTGTTGACGGCACCGGTGCTAGGAGTAATGAGAGGAACGAGACCTCGTAT
CCCGCAGTAGGAGGTGATATGGAAGGGGACGAAGAGGGTTGGCGGCACGG
CGGGGTCGGCACCGGGTATGGAGGAGGAGAAGAAGGCAACGAGGGGCAGG
TTGGGCGTAGAAAGCCGGACCCAACGCATTTTTCGTTTTGGCTGGCCGCT
AACCTTCCCCTCGATGACAGCGCGCGGCAGGAGCTTCTGGACATGGATTC
GGTGGTCTCGCGGCTCAGGTTAGACGTTAGCGGTAGATCCAGAGTGGTTG
CTTTTCGGTTATAAAGGCGACGTGTGGTATTACAAGGTGGTCATCTGCCC
GGACCTTTGTCCGCCTGCCCCTTTGCGAGCTCCCGTACCTCGGCTGTTGC
GCGACATGACCAGCGGAGACAAAAACGGTAGCATGGGCAGCATGAACTGT
AGAAAGCGCGAATATGGGTGCGTAGGCGGCGGCAGCGGTGAGGAGGGCAG
GCGGGCGGCAAAGGAGGCAGGGAGAAGAGGTTCGTGCCGTCACTGGGTAA
TGTCAATCCCGCGGTTCGTCGTGGCCATTAACTCTCCCGACGCGCTCGCA
GCGAGAGCTGGTCACCTCCTTCGGGAAGCGCGGGAGTCGCCCAGACTCCA
GCCGTCAGCTACCAACGCTCATCCAGCAGCGGTGGCAGTAGGTCCGTTGG
CGATGGTGAATGCGGATGAGGTATCGGCATTGGGCTCGGCGACGAACGGT
ACCGAGGAGGGTGGGGAGCGGAGACGGTCGAGCAGAGCGACAATGGAGAG
GTTCCTAGCAGCGCTCGAGCGGGGTTTTTACCGCAGCGATGGTGGTAATG
GTGATGCTGGTACTGGTGCTGGTGCTGAGAGGAGAGAAATAACTGGGGGC
GGTAGTGGAGCTCCAGTTGCGAGGGCTGTTGCACCACGGGCAACCGTTGG
AGAAGTAGCCGCAGGACGGGCGGGGCATGGGAGTGTCGTGGTAAACGAGG
TGCTGGAGGAAAGGGGTGGTGGAGGTGTTGACGGCACCGGTGCTAGGAGT
AATGAGAGGAACGAGACCTCGTATCCCGCAGTAGGAGGTGATATGGAAGG
GGACGAAGAGGGTTGGCGGCACGGCGGGGTCGGCACCGGGTATGGAGGAG
GAGAAGAAGGCAACGAGGGGCAGGTTGGGCGTAGAAAGCCGGACCCAACG
CATTTTTCGTTTTGGCTGGCCGCTAACCTTCCCCTCGATGACAGCGCGCG
GCAGGAGCTTCTGGACATGGATTCGGTGGTCTCGCGGCTCAGGTTAGACG
TTAGCGGTAGATCCAGAGTGGTTGCTTTTCGGTTATAA
back to top