prot_H-paniculata_contig9398.17158.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig9398.17158.1
Unique Nameprot_H-paniculata_contig9398.17158.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length238
Homology
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BLAST of mRNA_H-paniculata_contig9398.17158.1 vs. uniprot
Match: A0A6H5KP54_9PHAE (CULT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP54_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 5.380e-11
Identity = 42/67 (62.69%), Postives = 47/67 (70.15%), Query Frame = 0 
Query:  156 LAPPSIHAYLGEACP-QTVRSRADLEVGSVVELPIFPLPGVVLFPGESLPLRLRPDSPYANLVRSML 221
            L  P+ HAYLGEA    +  SR DLE GS VE+PI  LPGVVLFPGESLPLRL  +  YA+LV S L
Sbjct:  109 LPTPATHAYLGEATTGSSSLSRKDLEEGSTVEIPILALPGVVLFPGESLPLRLH-NPAYADLVGSFL 174
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BLAST of mRNA_H-paniculata_contig9398.17158.1 vs. uniprot
Match: D8LLP2_ECTSI (Protein cereblon n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLP2_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 2.390e-10
Identity = 40/61 (65.57%), Postives = 44/61 (72.13%), Query Frame = 0 
Query:  162 HAYLGEACP-QTVRSRADLEVGSVVELPIFPLPGVVLFPGESLPLRLRPDSPYANLVRSML 221
            HAYLGEA    +  SR DLE GS VE+PI  LPGVVLFPGESLPLRL  +  YA+LV S L
Sbjct:   56 HAYLGEATTGSSSLSRKDLEEGSTVEIPILALPGVVLFPGESLPLRLH-NPAYADLVESFL 115
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9398.17158.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KP54_9PHAE5.380e-1162.69CULT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LLP2_ECTSI2.390e-1065.57Protein cereblon n=1 Tax=Ectocarpus siliculosus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.130.40coord: 170..228
e-value: 1.1E-7
score: 33.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9398contigH-paniculata_contig9398:1966..2679 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9398.17158.1mRNA_H-paniculata_contig9398.17158.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig9398 1860..2679 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig9398.17158.1 ID=prot_H-paniculata_contig9398.17158.1|Name=mRNA_H-paniculata_contig9398.17158.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=238bp
MDRHDNEEETAAVLPLVALQEEGEAGQSAINTDESAVPVGTMDLPVRDPG
NTSNRIIREDQPLLLLPPPPPPPPQATIALSRGPRRRHGNPHISDASVAQ
RQDEPPADEEYKESLPGEELKSESESESESESESESESESESFPSSSSPP
PQPRQLAPPSIHAYLGEACPQTVRSRADLEVGSVVELPIFPLPGVVLFPG
ESLPLRLRPDSPYANLVRSMLSDDDGNGDERRGQRGAA
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