prot_H-paniculata_contig9392.17157.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig9392.17157.1
Unique Name	prot_H-paniculata_contig9392.17157.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	404

Homology

[Close]

BLAST of mRNA_H-paniculata_contig9392.17157.1 vs. uniprot
Match: D8LMB1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMB1_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 5.220e-6
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 0

Query:    1 MVNVKNKTCFHKGCSKRPSFGLQSTRKAEFCVQHAKCGM 39
            MV+V N+ C H GC+KRPSFG   ++K EFC QHA  GM
Sbjct:    1 MVDVVNRRCRHPGCTKRPSFGQDGSKKQEFCAQHAHQGM 39

[Close]

BLAST of mRNA_H-paniculata_contig9392.17157.1 vs. uniprot
Match: D7FUJ6_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ6_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 1.980e-5
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 0

Query:    1 MVNVKNKTCFHKGCSKRPSFGLQSTRKAEFCVQHAKCGMV 40
            MV+V +K C H GC+KRPS+G   ++KAE C QHA  GMV
Sbjct:    1 MVDVVSKRCGHPGCTKRPSYGNDGSKKAELCAQHALQGMV 40

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig9392.17157.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig9392.17157.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D8LMB1_ECTSI	5.220e-6	58.97	EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
D7FUJ6_ECTSI	1.980e-5	57.50	EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig9392	contig	H-paniculata_contig9392:4428..5639 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig9392.17157.1	mRNA_H-paniculata_contig9392.17157.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig9392 4407..6079 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig9392.17157.1 ID=prot_H-paniculata_contig9392.17157.1|Name=mRNA_H-paniculata_contig9392.17157.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=404bp
MVNVKNKTCFHKGCSKRPSFGLQSTRKAEFCVQHAKCGMVGVKNKRCSHE
DCSKVPSYGATGTRKTQFCAQHAEKGMVDVLSKRCSYEGCSKMPSYGAAG
TRKAEFCVRHAEEGMVNVKNKRCSHEGCSTHSSYGATGTRKAEFCVQHAK
DGMVDVVSKRCSHEGCLTKPSYGATGTRKAEYCAQHAEEGMVNVKNKMCF
HEGCSKRPSFGLQSTRKAEFCAQHAEEEMVDVLSRRCSYEDCSKMRSYGA
TGTRKVEFCVQHAEAGIVDVLSKRCLHEGCSTRPLNRATGTRKAECCAQH
AEEGMVNVRRSNSSSCGRRSKISTSRSDVKLEIPSVLSNIGSFTIIDSRS
AKRARMAGSLSISEELALRTSAVSILALDDRSSVKTELTVSRCSVSSPAP
QLL*