prot_H-paniculata_contig9392.17157.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig9392.17157.1
Unique Nameprot_H-paniculata_contig9392.17157.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length404
Homology
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BLAST of mRNA_H-paniculata_contig9392.17157.1 vs. uniprot
Match: D8LMB1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMB1_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 5.220e-6
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 0 
Query:    1 MVNVKNKTCFHKGCSKRPSFGLQSTRKAEFCVQHAKCGM 39
            MV+V N+ C H GC+KRPSFG   ++K EFC QHA  GM
Sbjct:    1 MVDVVNRRCRHPGCTKRPSFGQDGSKKQEFCAQHAHQGM 39
[Close]
BLAST of mRNA_H-paniculata_contig9392.17157.1 vs. uniprot
Match: D7FUJ6_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ6_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 1.980e-5
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 0 
Query:    1 MVNVKNKTCFHKGCSKRPSFGLQSTRKAEFCVQHAKCGMV 40
            MV+V +K C H GC+KRPS+G   ++KAE C QHA  GMV
Sbjct:    1 MVDVVSKRCGHPGCTKRPSYGNDGSKKAELCAQHALQGMV 40
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9392.17157.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMB1_ECTSI5.220e-658.97EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FUJ6_ECTSI1.980e-557.50EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9392contigH-paniculata_contig9392:4428..5639 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9392.17157.1mRNA_H-paniculata_contig9392.17157.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig9392 4407..6079 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig9392.17157.1 ID=prot_H-paniculata_contig9392.17157.1|Name=mRNA_H-paniculata_contig9392.17157.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=404bp
MVNVKNKTCFHKGCSKRPSFGLQSTRKAEFCVQHAKCGMVGVKNKRCSHE
DCSKVPSYGATGTRKTQFCAQHAEKGMVDVLSKRCSYEGCSKMPSYGAAG
TRKAEFCVRHAEEGMVNVKNKRCSHEGCSTHSSYGATGTRKAEFCVQHAK
DGMVDVVSKRCSHEGCLTKPSYGATGTRKAEYCAQHAEEGMVNVKNKMCF
HEGCSKRPSFGLQSTRKAEFCAQHAEEEMVDVLSRRCSYEDCSKMRSYGA
TGTRKVEFCVQHAEAGIVDVLSKRCLHEGCSTRPLNRATGTRKAECCAQH
AEEGMVNVRRSNSSSCGRRSKISTSRSDVKLEIPSVLSNIGSFTIIDSRS
AKRARMAGSLSISEELALRTSAVSILALDDRSSVKTELTVSRCSVSSPAP
QLL*
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