prot_H-paniculata_contig12727.1715.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig12727.1715.1
Unique Nameprot_H-paniculata_contig12727.1715.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length77
Homology
BLAST of mRNA_H-paniculata_contig12727.1715.1 vs. uniprot
Match: A0A6G0JTE1_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0JTE1_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.920e-10
Identity = 29/71 (40.85%), Postives = 48/71 (67.61%), Query Frame = 0
Query:    5 YTLRQKSEALWALKQFDRDLARISGLRIKRLRLDQGEEYTGKPFRQFWSENFIKQKLSAAYILQQDGVAER 75
            Y +++K+E L   K+F+ D+   +G +IKRLR D G EYTG+ F+++ S+  I+ + +  Y  QQ+G+AER
Sbjct:   80 YFMKKKAEVLEKFKKFEADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAER 150          
BLAST of mRNA_H-paniculata_contig12727.1715.1 vs. uniprot
Match: A0A6A3LQ24_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3LQ24_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 5.130e-10
Identity = 29/71 (40.85%), Postives = 46/71 (64.79%), Query Frame = 0
Query:    5 YTLRQKSEALWALKQFDRDLARISGLRIKRLRLDQGEEYTGKPFRQFWSENFIKQKLSAAYILQQDGVAER 75
            Y +++K+E L   K F  D+   +G +IKRLR D G EYTG+ F+++ S+  I+ + +  Y  QQ+G+AER
Sbjct:   56 YFMKKKAEVLEKFKMFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAER 126          
BLAST of mRNA_H-paniculata_contig12727.1715.1 vs. uniprot
Match: A0A6A4CGC1_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4CGC1_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.230e-9
Identity = 29/71 (40.85%), Postives = 48/71 (67.61%), Query Frame = 0
Query:    5 YTLRQKSEALWALKQFDRDLARISGLRIKRLRLDQGEEYTGKPFRQFWSENFIKQKLSAAYILQQDGVAER 75
            Y +++K+E L   K+F+ D+   +G +IKRLR D G EYTG+ F+++ S+  I+ + +  Y  QQ+G+AER
Sbjct:   56 YFMKKKAEVLEKFKKFEADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAER 126          
BLAST of mRNA_H-paniculata_contig12727.1715.1 vs. uniprot
Match: A0A6A3GPC9_9STRA (Integrase catalytic domain-containing protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GPC9_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.370e-9
Identity = 29/71 (40.85%), Postives = 48/71 (67.61%), Query Frame = 0
Query:    5 YTLRQKSEALWALKQFDRDLARISGLRIKRLRLDQGEEYTGKPFRQFWSENFIKQKLSAAYILQQDGVAER 75
            Y +++K+E L   K+F+ D+   +G +IKRLR D G EYTG+ F+++ S+  I+ + +  Y  QQ+G+AER
Sbjct:  131 YFMKKKAEVLEKFKKFEADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAER 201          
BLAST of mRNA_H-paniculata_contig12727.1715.1 vs. uniprot
Match: A0A6A3V8J0_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3V8J0_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.420e-9
Identity = 29/71 (40.85%), Postives = 47/71 (66.20%), Query Frame = 0
Query:    5 YTLRQKSEALWALKQFDRDLARISGLRIKRLRLDQGEEYTGKPFRQFWSENFIKQKLSAAYILQQDGVAER 75
            Y +++K+E L   K F+ D+   +G +IKRLR D G EYTG+ F+++  +  I+ + +  Y LQQ+G+AER
Sbjct:   80 YFMKKKAEVLEKFKMFEADMENATGRKIKRLRSDNGGEYTGRLFKEYLFKQGIRHEKTVPYTLQQNGLAER 150          
BLAST of mRNA_H-paniculata_contig12727.1715.1 vs. uniprot
Match: A0A6A3GFE6_9STRA (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GFE6_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.640e-9
Identity = 30/71 (42.25%), Postives = 46/71 (64.79%), Query Frame = 0
Query:    5 YTLRQKSEALWALKQFDRDLARISGLRIKRLRLDQGEEYTGKPFRQFWSENFIKQKLSAAYILQQDGVAER 75
            Y +++KSE L   K F  D+   +G +IKRLR D G EYTG+ F+++ S+  I+ + +  Y  QQ+G+AER
Sbjct:  212 YFMKKKSEVLEKFKMFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAER 282          
BLAST of mRNA_H-paniculata_contig12727.1715.1 vs. uniprot
Match: A0A6A4B1T5_9STRA (Integrase catalytic domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4B1T5_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.650e-9
Identity = 29/71 (40.85%), Postives = 47/71 (66.20%), Query Frame = 0
Query:    5 YTLRQKSEALWALKQFDRDLARISGLRIKRLRLDQGEEYTGKPFRQFWSENFIKQKLSAAYILQQDGVAER 75
            Y +++K+E L   K+F  D+   +G +IKRLR D G EYTG+ F+++ S+  I+ + +  Y  QQ+G+AER
Sbjct:   29 YFMKKKAEVLDKFKKFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAER 99          
BLAST of mRNA_H-paniculata_contig12727.1715.1 vs. uniprot
Match: A0A6A4AZQ8_9STRA (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4AZQ8_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.850e-9
Identity = 30/71 (42.25%), Postives = 46/71 (64.79%), Query Frame = 0
Query:    5 YTLRQKSEALWALKQFDRDLARISGLRIKRLRLDQGEEYTGKPFRQFWSENFIKQKLSAAYILQQDGVAER 75
            Y +++KSE L   K F  D+   +G +IKRLR D G EYTG+ F+++ S+  I+ + +  Y  QQ+G+AER
Sbjct:   20 YFMKKKSEVLEKFKMFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAER 90          
BLAST of mRNA_H-paniculata_contig12727.1715.1 vs. uniprot
Match: A0A6A3K0I1_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3K0I1_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.110e-9
Identity = 29/71 (40.85%), Postives = 46/71 (64.79%), Query Frame = 0
Query:    5 YTLRQKSEALWALKQFDRDLARISGLRIKRLRLDQGEEYTGKPFRQFWSENFIKQKLSAAYILQQDGVAER 75
            Y +++K+E L   K F  D+   +G +IKRLR D G EYTG+ F+++ S+  I+ + +  Y  QQ+G+AER
Sbjct:   29 YFMKKKAEVLEKFKMFKADMENATGRKIKRLRSDNGREYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAER 99          
BLAST of mRNA_H-paniculata_contig12727.1715.1 vs. uniprot
Match: A0A6G0MD97_9STRA (Integrase catalytic domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6G0MD97_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.620e-9
Identity = 29/71 (40.85%), Postives = 47/71 (66.20%), Query Frame = 0
Query:    5 YTLRQKSEALWALKQFDRDLARISGLRIKRLRLDQGEEYTGKPFRQFWSENFIKQKLSAAYILQQDGVAER 75
            Y +++K+E L   K F  D+   +G +IKRLR D G EYTG+ F+++ S+  I+ + +  Y+ QQ+G+AER
Sbjct:  221 YFMKKKAEVLEKFKMFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYMPQQNGLAER 291          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12727.1715.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0JTE1_9STRA4.920e-1040.85Integrase catalytic domain-containing protein n=3 ... [more]
A0A6A3LQ24_9STRA5.130e-1040.85Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A4CGC1_9STRA1.230e-940.85Integrase catalytic domain-containing protein n=3 ... [more]
A0A6A3GPC9_9STRA1.370e-940.85Integrase catalytic domain-containing protein n=7 ... [more]
A0A6A3V8J0_9STRA1.420e-940.85Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3GFE6_9STRA1.640e-942.25Integrase catalytic domain-containing protein (Fra... [more]
A0A6A4B1T5_9STRA1.650e-940.85Integrase catalytic domain-containing protein n=4 ... [more]
A0A6A4AZQ8_9STRA1.850e-942.25Integrase catalytic domain-containing protein (Fra... [more]
A0A6A3K0I1_9STRA2.110e-940.85Integrase catalytic domain-containing protein n=1 ... [more]
A0A6G0MD97_9STRA2.620e-940.85Integrase catalytic domain-containing protein n=6 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 7..75
e-value: 3.5E-8
score: 33.7
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..76
e-value: 1.5E-8
score: 36.1
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 3..75

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12727contigH-paniculata_contig12727:3799..4029 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12727.1715.1mRNA_H-paniculata_contig12727.1715.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig12727 3589..4278 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig12727.1715.1 ID=prot_H-paniculata_contig12727.1715.1|Name=mRNA_H-paniculata_contig12727.1715.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
MREFYTLRQKSEALWALKQFDRDLARISGLRIKRLRLDQGEEYTGKPFRQ
FWSENFIKQKLSAAYILQQDGVAERS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf