mRNA_H-paniculata_contig12727.1715.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12727.1715.1
Unique NamemRNA_H-paniculata_contig12727.1715.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12727.1715.1 vs. uniprot
Match: A0A6D2IM54_9BRAS (Uncharacterized protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IM54_9BRAS)

HSP 1 Score: 176 bits (447), Expect = 4.120e-47
Identity = 99/239 (41.42%), Postives = 141/239 (59.00%), Query Frame = 1
Query:    1 HGRLGHVRNLST--------VSGQQDIRLSGKLGVCSACEKGKASKQLVKKYREERTTKSLELVHTDITG-LVDTSFGGCRFTIIFVDDYSRMREFYTLRQKSEALWALKQFDRDLARISGLRIKRLRLDQGEEYTGKPFRQFWSENFIKQKLSAAYILQQDGVAERS*RSIFEMARTKMITANMGHRCWEEAVCSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCMAYVMV 690
            H RLGH+ +           V+G   +  +G  G+C  C +GK +++ + K    R +++L+LVHTDI G +  TS  G R+ I F+DDYSR    + L +KSEAL A K+F     R  GL +  LR D+G EY    F+ +  EN IK++L+AAY  QQ+G+AER  RSI  MAR  M+  ++  R W EAV  AV+ LNR+P+      TP E+W    P ++H+RVFGC+AY +V
Sbjct:  439 HKRLGHLSHSGMQSLVEKKMVNGLPQLSHNGDGGLCDICMRGKQNRENIPKKSSWRASRALQLVHTDICGPIAPTSASGKRYIINFIDDYSRKCWSFLLAEKSEALRAFKEFKVAAEREMGLSLVSLRSDRGGEYNSAAFQDYCRENGIKRQLTAAYTPQQNGIAERKNRSIMNMARCMMLGMSVPRRFWPEAVQYAVHVLNRSPSAALGDVTPDERWSNHKPSVEHVRVFGCVAYALV 677          
BLAST of mRNA_H-paniculata_contig12727.1715.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA)

HSP 1 Score: 169 bits (429), Expect = 1.060e-44
Identity = 89/237 (37.55%), Postives = 135/237 (56.96%), Query Frame = 1
Query:    1 HGRLGHVR--NLSTVSGQQDIR----LSGKLGVCSACEKGKASKQLVKKYREERTTKSLELVHTDITG-LVDTSFGGCRFTIIFVDDYSRMREFYTLRQKSEALWALKQFDRDLARISGLRIKRLRLDQGEEYTGKPFRQFWSENFIKQKLSAAYILQQDGVAERS*RSIFEMARTKMITANMGHRCWEEAVCSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCMAYVMV 690
            H RLGH     L  +S    ++    +     +C  C+ GK  K    K    R T+ L+LVHTD+ G +  TS  G ++ ++F+DDY+RM   + L++KS+      +F   +   +GL++KRLR D G EYT   F++F  +  I+ +L+  Y  QQ+GV+ER  R++ EMAR  +    +    W EAV ++VY LN  PT+   G TP+E WHG TP ++HL+VFGC+ Y +V
Sbjct:  397 HKRLGHFSYSTLKRMSSNDLVKNLPAIQDNANLCDVCQYGKQRKLPFPKEASWRATEKLQLVHTDVCGPMSTTSLNGSKYFLLFIDDYTRMSWVFFLKKKSDVFANFLKFKFMVENETGLQVKRLRSDNGTEYTAGEFKKFCEQVGIQHQLTVPYTPQQNGVSERKNRTVMEMARCLLFEKGLPKTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCYALV 633          
BLAST of mRNA_H-paniculata_contig12727.1715.1 vs. uniprot
Match: A0A251T6N3_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251T6N3_HELAN)

HSP 1 Score: 169 bits (428), Expect = 1.450e-44
Identity = 94/238 (39.50%), Postives = 140/238 (58.82%), Query Frame = 1
Query:    1 HGRLGHVRNLSTVS--GQQDI-----RLSGKLGVCSACEKGKASKQLVKKYREERTTKSLELVHTDITGLVDT-SFGGCRFTIIFVDDYSRMREFYTLRQKSEALWALKQFDRDLARISGLRIKRLRLDQGEEYTGKPFRQFWSENFIKQKLSAAYILQQDGVAERS*RSIFEMARTKMITANMGHRCWEEAVCSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCMAYVMV 690
            H R GHV NL T++  G +DI     ++S    +C  C  GK ++++     + + TK L+L+H+DI G + T S GGCR+ I F+DDYSR    Y L+ KSEAL   K F       S   IK LR D+G EY GK F+++ + N I  +L+ +Y  QQ+GVAER  R++ E++R+ +    + ++ W EA+    Y LNR  T+     TP+E W+G  P ++HL+VFG +AYV +
Sbjct:  411 HKRYGHV-NLDTLADMGNKDIVYGLPKISRDTSICEGCVSGKQARKVFPNKTKWQATKPLQLIHSDICGPMRTESIGGCRYFITFIDDYSRKTWVYFLKLKSEALSYFKLFKALSENQSDHTIKTLRTDRGGEYCGKSFQEYLNANGIHHQLTNSYSPQQNGVAERKNRTLMELSRSMLSMKKLPNKFWAEAIACTTYILNRTVTKTRPNVTPFEAWNGRKPNVEHLKVFGSVAYVHI 647          
BLAST of mRNA_H-paniculata_contig12727.1715.1 vs. uniprot
Match: Q9LH44_ARATH (Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9LH44_ARATH)

HSP 1 Score: 168 bits (426), Expect = 2.730e-44
Identity = 91/239 (38.08%), Postives = 138/239 (57.74%), Query Frame = 1
Query:    1 HGRLGHVRNLSTVSGQQDIRLSGKL-------GVCSACEKGKASKQLVKKYREERTTKSLELVHTDITGLVDT-SFGGCRFTIIFVDDYSRMREFYTLRQKSEALWALKQFDRDLARISGLRIKRLRLDQGEEYTGKPFRQFWSENFIKQKLSAAYILQQDGVAERS*RSIFEMARTKMITANMGHRCWEEAVCSAVYCLNRAPTRP-HNGGTPYEKWHGETPKLDHLRVFGCMAYVMV 690
            H R GHV N   +   Q +++  KL       G+C+ACE GK S++   K  +  T K+LEL+H+D+ G + T S  G R+ + F+DD+SRM   Y L+ KSE +   K F   +   S  RIKRLR D G E+  + F +   E+ I  +++  Y  QQ+GVAER  R++ EMAR+ +    + ++ W EA+ ++ Y  NR P++    G TP E W G+ P +DHL+VFGC+ Y+ +
Sbjct:  458 HKRFGHV-NYDKIETMQTLKIVEKLPKFEVIKGICAACEMGKQSRRSFPKKSQSNTNKTLELIHSDVCGPMQTESINGSRYFLTFIDDFSRMTWVYFLKNKSEVITKFKIFKPYVENQSESRIKRLRTDGGGEFLSREFIKLCQESGIHHEITTPYSPQQNGVAERRNRTLVEMARSMIEEKKLSNKFWAEAIATSTYLQNRLPSKSLEKGVTPMEIWSGKKPSVDHLKVFGCVCYIHI 695          
BLAST of mRNA_H-paniculata_contig12727.1715.1 vs. uniprot
Match: A0A3S3RF48_9ACAR (Retrovirus-related Pol polyprotein from transposon TNT 1-94-like protein (Fragment) n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3RF48_9ACAR)

HSP 1 Score: 163 bits (413), Expect = 5.780e-44
Identity = 96/238 (40.34%), Postives = 133/238 (55.88%), Query Frame = 1
Query:    1 HGRLGHV-----RNLSTVSGQQDIRLSG--KLGVCSACEKGKASKQLVKKYREERTTKSLELVHTDITGLVDT-SFGGCRFTIIFVDDYSRMREFYTLRQKSEALWALKQFDRDLARISGLRIKRLRLDQGEEYTGKPFRQFWSENFIKQKLSAAYILQQDGVAERS*RSIFEMARTKMITANMGHRCWEEAVCSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCMAYVMV 690
            H RLGH+     R++ T      +  S   K  VC  C KGK S++        R+TK+L+LVHTD+ G + T +F G R+ + F+DDYSR    Y L  KSE      + +  +  ++  RIK LR D+G EY  K F  F     I Q+ +A+Y  QQ+GVAER  R+I E AR  +  A + ++ W+EAV +AVY  NR+ T+     TPYE W G+ P L +LRVFGC AY  +
Sbjct:  117 HHRLGHISKDTIRHMMTNKMVDGLSYSDITKDTVCEGCAKGKMSRRPFPNTSTNRSTKTLQLVHTDVCGPMQTKTFSGKRYFLTFIDDYSRFTVCYLLEHKSEVYDKFVECEALVTNMTSNRIKMLRSDEGCEYRSKKFNAFCKGKGIIQQFTASYTPQQNGVAERMNRTIVEAARCMLQAAQLDNKYWDEAVQTAVYLQNRSSTKALTNITPYEAWFGKKPDLSNLRVFGCQAYAHI 354          
BLAST of mRNA_H-paniculata_contig12727.1715.1 vs. uniprot
Match: A0A2Z7BCE9_9LAMI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BCE9_9LAMI)

HSP 1 Score: 164 bits (416), Expect = 2.030e-43
Identity = 92/239 (38.49%), Postives = 137/239 (57.32%), Query Frame = 1
Query:    1 HGRLGHVRNLST--------VSGQQDIRLSGKLGVCSACEKGKASKQLVKKYREERTTKSLELVHTDITGLVDT-SFGGCRFTIIFVDDYSRMREFYTLRQKSEALWALKQFDRDLARISGLRIKRLRLDQGEEYTGKPFRQFWSENFIKQKLSAAYILQQDGVAERS*RSIFEMARTKMITANMGHRCWEEAVCSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCMAYVMV 690
            H R GH+             V G   I + G   VC  C  GK SK+     +  R T+ LELVH D+ G + T + GG ++ ++FVDDYSRM   Y L+ KSEA     +F   + +  G  +K LR D+G E+T   F Q+  ++ I ++L+A Y  +Q+GVAER  R+I EMAR+ + +  + +  W EAV +AVY +N +PT+     TPYE W G+ P ++HL++FGC+ YV++
Sbjct:  291 HLRYGHLHTAGLRLLNQKEMVRGLPRIDVDG--AVCEGCMYGKQSKRSFPVGQSWRATEPLELVHADLCGPMRTETLGGSKYFLLFVDDYSRMSWVYFLKFKSEAFGQFFKFKALVEKQKGSNLKILRTDRGGEFTSMEFNQYCEKHGIHKELTAPYTPEQNGVAERKNRTIVEMARSMLKSKGLPYNFWAEAVTTAVYLINLSPTKAVMNKTPYEAWSGKRPSVEHLKIFGCIVYVLI 527          
BLAST of mRNA_H-paniculata_contig12727.1715.1 vs. uniprot
Match: A0A0A1WGJ2_ZEUCU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Zeugodacus cucurbitae TaxID=28588 RepID=A0A0A1WGJ2_ZEUCU)

HSP 1 Score: 165 bits (418), Expect = 2.480e-43
Identity = 95/236 (40.25%), Postives = 131/236 (55.51%), Query Frame = 1
Query:    1 HGRLGHVR--------NLSTVSGQQDIRLSGKLGVCSACEKGKASKQLVKKYREERTTKSLELVHTDITGLVDT-SFGGCRFTIIFVDDYSRMREFYTLRQKSEALWALKQFDRDLARISGLRIKRLRLDQGEEYTGKPFRQFWSENFIKQKLSAAYILQQDGVAERS*RSIFEMARTKMITANMGHRCWEEAVCSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCMAY 681
            H R GH+         + + V G   I ++ K   C  C K K       K  E  T + LELVHTD+ G ++  S GG R+ + F+DD+SRM   Y++++KSE     K F   +   +   IK+LR D G EYT   F +F  E  IK++L+  Y  QQ+GVAER  R+I EMAR+ ++ AN+    W EAV +AVY  NRAPT+     TPYE W+ + P + HLRVFG  A+
Sbjct:  404 HNRYGHINFESLKQIVDNNLVRGLNKIDINSKTN-CDTCNKSKICAVPFPKKCERETKQILELVHTDVCGPINVKSVGGARYFLTFIDDFSRMIFIYSIKEKSEVFEKFKTFKNMVENQTQKTIKKLRSDNGTEYTNNKFSEFLKECGIKRQLTVPYTPQQNGVAERVNRTIVEMARSLLVHANLKEELWGEAVHTAVYIRNRAPTKLLKHTTPYEVWYNKKPSVKHLRVFGARAF 638          
BLAST of mRNA_H-paniculata_contig12727.1715.1 vs. uniprot
Match: A0A0A1X768_ZEUCU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Zeugodacus cucurbitae TaxID=28588 RepID=A0A0A1X768_ZEUCU)

HSP 1 Score: 165 bits (418), Expect = 3.170e-43
Identity = 95/236 (40.25%), Postives = 131/236 (55.51%), Query Frame = 1
Query:    1 HGRLGHVR--------NLSTVSGQQDIRLSGKLGVCSACEKGKASKQLVKKYREERTTKSLELVHTDITGLVDT-SFGGCRFTIIFVDDYSRMREFYTLRQKSEALWALKQFDRDLARISGLRIKRLRLDQGEEYTGKPFRQFWSENFIKQKLSAAYILQQDGVAERS*RSIFEMARTKMITANMGHRCWEEAVCSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCMAY 681
            H R GH+         + + V G   I ++ K   C  C K K       K  E  T + LELVHTD+ G ++  S GG R+ + F+DD+SRM   Y++++KSE     K F   +   +   IK+LR D G EYT   F +F  E  IK++L+  Y  QQ+GVAER  R+I EMAR+ ++ AN+    W EAV +AVY  NRAPT+     TPYE W+ + P + HLRVFG  A+
Sbjct:  404 HNRYGHINFESLKQIVDNNLVRGLNKIDINSKTN-CDTCNKSKICAVPFPKKCERETKQILELVHTDVCGPINVKSVGGARYFLTFIDDFSRMIFIYSIKEKSEVFEKFKTFKNMVENQTQKTIKKLRSDNGTEYTNNKFSEFLKECGIKRQLTVPYTPQQNGVAERVNRTIVEMARSLLVHANLKEELWGEAVHTAVYIRNRAPTKLLKHTTPYEVWYNKKPSVKHLRVFGARAF 638          
BLAST of mRNA_H-paniculata_contig12727.1715.1 vs. uniprot
Match: A0A251SFG3_HELAN (Putative ribonuclease H-like domain-containing protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251SFG3_HELAN)

HSP 1 Score: 164 bits (415), Expect = 8.240e-43
Identity = 95/239 (39.75%), Postives = 134/239 (56.07%), Query Frame = 1
Query:    1 HGRLGHV--------RNLSTVSGQQDIRLSGKLGVCSACEKGKASKQLVKKYREERTTKSLELVHTDITGLVDT-SFGGCRFTIIFVDDYSRMREFYTLRQKSEALWALKQFDRDLARISGLRIKRLRLDQGEEYTGKPFRQFWSENFIKQKLSAAYILQQDGVAERS*RSIFEMARTKMITANMGHRCWEEAVCSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCMAYVMV 690
            H R GHV        +N   V G   IR       C  C  GK +++   K    + T+ L+LVH+DI G + T S GGCR+ I F+DDY+R    Y L+ KSEAL+  K F     + S   IK LR D+G EY  K F+++   N I+ +L+ +Y  QQ+GVAER  R++ E++R+ M    + +  W EAV    Y LNR  T+     TPYE W+G+ P ++HLRVFGC+AY ++
Sbjct:  693 HRRYGHVNMDTLIDMKNKDLVIGLPKIRKDD--STCEGCISGKHARKPFHKKMVWQATEPLQLVHSDICGPMRTESIGGCRYFITFIDDYTRKTWVYFLKFKSEALYHFKNFRVLNEKQSNHVIKTLRTDRGGEYCSKAFQEYLRLNGIRHQLTNSYTPQQNGVAERKNRTLMELSRSMMNIKQLPNCYWAEAVACTTYILNRTITKTRPNITPYEAWNGQKPNVEHLRVFGCLAYALI 929          
BLAST of mRNA_H-paniculata_contig12727.1715.1 vs. uniprot
Match: Q9C7Y1_ARATH (Copia-type polyprotein, putative; 28768-32772 n=3 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9C7Y1_ARATH)

HSP 1 Score: 164 bits (414), Expect = 1.090e-42
Identity = 94/239 (39.33%), Postives = 139/239 (58.16%), Query Frame = 1
Query:    1 HGRLGHV-----RNLST---VSGQQDIRLSGKLGVCSACEKGKASKQLVKKYREERTTKSLELVHTDITGLVD-TSFGGCRFTIIFVDDYSRMREFYTLRQKSEALWALKQFDRDLARISGLRIKRLRLDQGEEYTGKPFRQFWSENFIKQKLSAAYILQQDGVAERS*RSIFEMARTKMITANMGHRCWEEAVCSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCMAYVMV 690
            H R GH+     R+L+    V G     L  +  VC  C KGK  ++ + K    ++T+ L+LVHTDI G ++  S  G R+ + F+DD+SR    Y L +KSE     K+F  ++ R SG ++  LR D+G EY  + F ++  E  IK++L+AAY  QQ+GVAER  RS+  M R  ++  ++  + W EAV  AVY LNR+P++  N  TP EKW    P ++HLR+FG +AY +V
Sbjct:  436 HKRFGHLNHQGLRSLAEKEMVKGLPKFDLGEEEAVCDICLKGKQIRESIPKESAWKSTQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCWTYLLSEKSETFQFFKEFKAEVERESGKKLVCLRSDRGGEYNSREFDEYCKEFGIKRQLTAAYTPQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQYAVYILNRSPSKALNDITPEEKWSSWKPSVEHLRIFGSLAYALV 674          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12727.1715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6D2IM54_9BRAS4.120e-4741.42Uncharacterized protein n=2 Tax=Microthlaspi errat... [more]
A0A151T355_CAJCA1.060e-4437.55Retrovirus-related Pol polyprotein from transposon... [more]
A0A251T6N3_HELAN1.450e-4439.50Putative zinc finger, CCHC-type n=1 Tax=Helianthus... [more]
Q9LH44_ARATH2.730e-4438.08Copia-like retrotransposable element n=1 Tax=Arabi... [more]
A0A3S3RF48_9ACAR5.780e-4440.34Retrovirus-related Pol polyprotein from transposon... [more]
A0A2Z7BCE9_9LAMI2.030e-4338.49Retrovirus-related Pol polyprotein from transposon... [more]
A0A0A1WGJ2_ZEUCU2.480e-4340.25Retrovirus-related Pol polyprotein from transposon... [more]
A0A0A1X768_ZEUCU3.170e-4340.25Retrovirus-related Pol polyprotein from transposon... [more]
A0A251SFG3_HELAN8.240e-4339.75Putative ribonuclease H-like domain-containing pro... [more]
Q9C7Y1_ARATH1.090e-4239.33Copia-type polyprotein, putative; 28768-32772 n=3 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12727contigH-paniculata_contig12727:3589..4278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size690
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12727.1715.1prot_H-paniculata_contig12727.1715.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12727 3799..4029 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928995.473755-UTR-H-paniculata_contig12727:3588..37981622928995.473755-UTR-H-paniculata_contig12727:3588..3798Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12727 3589..3798 -
1691480695.0308914-UTR-H-paniculata_contig12727:3588..37981691480695.0308914-UTR-H-paniculata_contig12727:3588..3798Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12727 3589..3798 -
1622928995.5352285-UTR-H-paniculata_contig12727:4029..42781622928995.5352285-UTR-H-paniculata_contig12727:4029..4278Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12727 4030..4278 -
1691480695.050306-UTR-H-paniculata_contig12727:4029..42781691480695.050306-UTR-H-paniculata_contig12727:4029..4278Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12727 4030..4278 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928995.5031347-CDS-H-paniculata_contig12727:3798..40291622928995.5031347-CDS-H-paniculata_contig12727:3798..4029Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12727 3799..4029 -
1691480695.0410671-CDS-H-paniculata_contig12727:3798..40291691480695.0410671-CDS-H-paniculata_contig12727:3798..4029Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12727 3799..4029 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12727.1715.1

>prot_H-paniculata_contig12727.1715.1 ID=prot_H-paniculata_contig12727.1715.1|Name=mRNA_H-paniculata_contig12727.1715.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
MREFYTLRQKSEALWALKQFDRDLARISGLRIKRLRLDQGEEYTGKPFRQ
FWSENFIKQKLSAAYILQQDGVAERS*
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mRNA from alignment at H-paniculata_contig12727:3589..4278-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12727.1715.1 ID=mRNA_H-paniculata_contig12727.1715.1|Name=mRNA_H-paniculata_contig12727.1715.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=690bp|location=Sequence derived from alignment at H-paniculata_contig12727:3589..4278- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACGGGCGACTTGGGCATGTTCGAAACCTTTCCACAGTCTCGGGGCAACA AGACATAAGGTTAAGTGGGAAGCTCGGTGTCTGCTCGGCGTGTGAGAAGG GGAAAGCGTCAAAGCAGCTTGTGAAAAAATATCGAGAAGAGCGGACGACC AAGTCGCTGGAGCTGGTGCACACCGACATAACCGGACTGGTGGACACGTC CTTCGGAGGATGCCGCTTCACCATCATCTTCGTCGACGACTACAGCCGAA TGCGCGAATTCTATACCTTGCGACAAAAGTCTGAGGCGCTATGGGCCCTG AAGCAATTCGACAGGGATCTAGCGAGGATAAGCGGTTTGCGGATTAAGCG CCTTCGGTTGGATCAGGGAGAAGAATATACTGGGAAGCCTTTTAGGCAAT TCTGGTCCGAAAATTTCATCAAGCAGAAGTTGTCTGCCGCCTATATATTG CAACAAGACGGTGTGGCGGAGCGCAGCTAGCGCAGCATTTTCGAGATGGC AAGAACCAAGATGATCACCGCCAACATGGGTCATCGATGCTGGGAGGAAG CTGTGTGCTCGGCAGTGTACTGCCTAAATCGCGCCCCGACGCGACCGCAC AATGGAGGAACACCGTACGAAAAATGGCACGGCGAGACACCGAAGTTAGA CCACCTTCGCGTCTTCGGCTGCATGGCGTATGTTATGGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig12727:3589..4278-

>mRNA_H-paniculata_contig12727.1715.1 ID=mRNA_H-paniculata_contig12727.1715.1|Name=mRNA_H-paniculata_contig12727.1715.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig12727:3589..4278- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCGAATTCTATACCTTGCGACAAAAGTCTGAGGCGCTATGGGCCCT
GAAGCAATTCGACAGGGATCTAGCGAGGATAAGCGGTTTGCGGATTAAGC
GCCTTCGGTTGGATCAGGGAGAAGAATATACTGGGAAGCCTTTTAGGCAA
TTCTGGTCCGAAAATTTCATCAAGCAGAAGTTGTCTGCCGCCTATATATT
GCAACAAGACGGTGTGGCGGAGCGCAGCTAGATGCGCGAATTCTATACCT
TGCGACAAAAGTCTGAGGCGCTATGGGCCCTGAAGCAATTCGACAGGGAT
CTAGCGAGGATAAGCGGTTTGCGGATTAAGCGCCTTCGGTTGGATCAGGG
AGAAGAATATACTGGGAAGCCTTTTAGGCAATTCTGGTCCGAAAATTTCA
TCAAGCAGAAGTTGTCTGCCGCCTATATATTGCAACAAGACGGTGTGGCG
GAGCGCAGCTAG
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