mRNA_H-paniculata_contig12727.1715.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig12727.1715.1 vs. uniprot
Match: A0A6D2IM54_9BRAS (Uncharacterized protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IM54_9BRAS) HSP 1 Score: 176 bits (447), Expect = 4.120e-47 Identity = 99/239 (41.42%), Postives = 141/239 (59.00%), Query Frame = 1
Query: 1 HGRLGHVRNLST--------VSGQQDIRLSGKLGVCSACEKGKASKQLVKKYREERTTKSLELVHTDITG-LVDTSFGGCRFTIIFVDDYSRMREFYTLRQKSEALWALKQFDRDLARISGLRIKRLRLDQGEEYTGKPFRQFWSENFIKQKLSAAYILQQDGVAERS*RSIFEMARTKMITANMGHRCWEEAVCSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCMAYVMV 690
H RLGH+ + V+G + +G G+C C +GK +++ + K R +++L+LVHTDI G + TS G R+ I F+DDYSR + L +KSEAL A K+F R GL + LR D+G EY F+ + EN IK++L+AAY QQ+G+AER RSI MAR M+ ++ R W EAV AV+ LNR+P+ TP E+W P ++H+RVFGC+AY +V
Sbjct: 439 HKRLGHLSHSGMQSLVEKKMVNGLPQLSHNGDGGLCDICMRGKQNRENIPKKSSWRASRALQLVHTDICGPIAPTSASGKRYIINFIDDYSRKCWSFLLAEKSEALRAFKEFKVAAEREMGLSLVSLRSDRGGEYNSAAFQDYCRENGIKRQLTAAYTPQQNGIAERKNRSIMNMARCMMLGMSVPRRFWPEAVQYAVHVLNRSPSAALGDVTPDERWSNHKPSVEHVRVFGCVAYALV 677
BLAST of mRNA_H-paniculata_contig12727.1715.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA) HSP 1 Score: 169 bits (429), Expect = 1.060e-44 Identity = 89/237 (37.55%), Postives = 135/237 (56.96%), Query Frame = 1
Query: 1 HGRLGHVR--NLSTVSGQQDIR----LSGKLGVCSACEKGKASKQLVKKYREERTTKSLELVHTDITG-LVDTSFGGCRFTIIFVDDYSRMREFYTLRQKSEALWALKQFDRDLARISGLRIKRLRLDQGEEYTGKPFRQFWSENFIKQKLSAAYILQQDGVAERS*RSIFEMARTKMITANMGHRCWEEAVCSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCMAYVMV 690
H RLGH L +S ++ + +C C+ GK K K R T+ L+LVHTD+ G + TS G ++ ++F+DDY+RM + L++KS+ +F + +GL++KRLR D G EYT F++F + I+ +L+ Y QQ+GV+ER R++ EMAR + + W EAV ++VY LN PT+ G TP+E WHG TP ++HL+VFGC+ Y +V
Sbjct: 397 HKRLGHFSYSTLKRMSSNDLVKNLPAIQDNANLCDVCQYGKQRKLPFPKEASWRATEKLQLVHTDVCGPMSTTSLNGSKYFLLFIDDYTRMSWVFFLKKKSDVFANFLKFKFMVENETGLQVKRLRSDNGTEYTAGEFKKFCEQVGIQHQLTVPYTPQQNGVSERKNRTVMEMARCLLFEKGLPKTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCYALV 633
BLAST of mRNA_H-paniculata_contig12727.1715.1 vs. uniprot
Match: A0A251T6N3_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251T6N3_HELAN) HSP 1 Score: 169 bits (428), Expect = 1.450e-44 Identity = 94/238 (39.50%), Postives = 140/238 (58.82%), Query Frame = 1
Query: 1 HGRLGHVRNLSTVS--GQQDI-----RLSGKLGVCSACEKGKASKQLVKKYREERTTKSLELVHTDITGLVDT-SFGGCRFTIIFVDDYSRMREFYTLRQKSEALWALKQFDRDLARISGLRIKRLRLDQGEEYTGKPFRQFWSENFIKQKLSAAYILQQDGVAERS*RSIFEMARTKMITANMGHRCWEEAVCSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCMAYVMV 690
H R GHV NL T++ G +DI ++S +C C GK ++++ + + TK L+L+H+DI G + T S GGCR+ I F+DDYSR Y L+ KSEAL K F S IK LR D+G EY GK F+++ + N I +L+ +Y QQ+GVAER R++ E++R+ + + ++ W EA+ Y LNR T+ TP+E W+G P ++HL+VFG +AYV +
Sbjct: 411 HKRYGHV-NLDTLADMGNKDIVYGLPKISRDTSICEGCVSGKQARKVFPNKTKWQATKPLQLIHSDICGPMRTESIGGCRYFITFIDDYSRKTWVYFLKLKSEALSYFKLFKALSENQSDHTIKTLRTDRGGEYCGKSFQEYLNANGIHHQLTNSYSPQQNGVAERKNRTLMELSRSMLSMKKLPNKFWAEAIACTTYILNRTVTKTRPNVTPFEAWNGRKPNVEHLKVFGSVAYVHI 647
BLAST of mRNA_H-paniculata_contig12727.1715.1 vs. uniprot
Match: Q9LH44_ARATH (Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9LH44_ARATH) HSP 1 Score: 168 bits (426), Expect = 2.730e-44 Identity = 91/239 (38.08%), Postives = 138/239 (57.74%), Query Frame = 1
Query: 1 HGRLGHVRNLSTVSGQQDIRLSGKL-------GVCSACEKGKASKQLVKKYREERTTKSLELVHTDITGLVDT-SFGGCRFTIIFVDDYSRMREFYTLRQKSEALWALKQFDRDLARISGLRIKRLRLDQGEEYTGKPFRQFWSENFIKQKLSAAYILQQDGVAERS*RSIFEMARTKMITANMGHRCWEEAVCSAVYCLNRAPTRP-HNGGTPYEKWHGETPKLDHLRVFGCMAYVMV 690
H R GHV N + Q +++ KL G+C+ACE GK S++ K + T K+LEL+H+D+ G + T S G R+ + F+DD+SRM Y L+ KSE + K F + S RIKRLR D G E+ + F + E+ I +++ Y QQ+GVAER R++ EMAR+ + + ++ W EA+ ++ Y NR P++ G TP E W G+ P +DHL+VFGC+ Y+ +
Sbjct: 458 HKRFGHV-NYDKIETMQTLKIVEKLPKFEVIKGICAACEMGKQSRRSFPKKSQSNTNKTLELIHSDVCGPMQTESINGSRYFLTFIDDFSRMTWVYFLKNKSEVITKFKIFKPYVENQSESRIKRLRTDGGGEFLSREFIKLCQESGIHHEITTPYSPQQNGVAERRNRTLVEMARSMIEEKKLSNKFWAEAIATSTYLQNRLPSKSLEKGVTPMEIWSGKKPSVDHLKVFGCVCYIHI 695
BLAST of mRNA_H-paniculata_contig12727.1715.1 vs. uniprot
Match: A0A3S3RF48_9ACAR (Retrovirus-related Pol polyprotein from transposon TNT 1-94-like protein (Fragment) n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3RF48_9ACAR) HSP 1 Score: 163 bits (413), Expect = 5.780e-44 Identity = 96/238 (40.34%), Postives = 133/238 (55.88%), Query Frame = 1
Query: 1 HGRLGHV-----RNLSTVSGQQDIRLSG--KLGVCSACEKGKASKQLVKKYREERTTKSLELVHTDITGLVDT-SFGGCRFTIIFVDDYSRMREFYTLRQKSEALWALKQFDRDLARISGLRIKRLRLDQGEEYTGKPFRQFWSENFIKQKLSAAYILQQDGVAERS*RSIFEMARTKMITANMGHRCWEEAVCSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCMAYVMV 690
H RLGH+ R++ T + S K VC C KGK S++ R+TK+L+LVHTD+ G + T +F G R+ + F+DDYSR Y L KSE + + + ++ RIK LR D+G EY K F F I Q+ +A+Y QQ+GVAER R+I E AR + A + ++ W+EAV +AVY NR+ T+ TPYE W G+ P L +LRVFGC AY +
Sbjct: 117 HHRLGHISKDTIRHMMTNKMVDGLSYSDITKDTVCEGCAKGKMSRRPFPNTSTNRSTKTLQLVHTDVCGPMQTKTFSGKRYFLTFIDDYSRFTVCYLLEHKSEVYDKFVECEALVTNMTSNRIKMLRSDEGCEYRSKKFNAFCKGKGIIQQFTASYTPQQNGVAERMNRTIVEAARCMLQAAQLDNKYWDEAVQTAVYLQNRSSTKALTNITPYEAWFGKKPDLSNLRVFGCQAYAHI 354
BLAST of mRNA_H-paniculata_contig12727.1715.1 vs. uniprot
Match: A0A2Z7BCE9_9LAMI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BCE9_9LAMI) HSP 1 Score: 164 bits (416), Expect = 2.030e-43 Identity = 92/239 (38.49%), Postives = 137/239 (57.32%), Query Frame = 1
Query: 1 HGRLGHVRNLST--------VSGQQDIRLSGKLGVCSACEKGKASKQLVKKYREERTTKSLELVHTDITGLVDT-SFGGCRFTIIFVDDYSRMREFYTLRQKSEALWALKQFDRDLARISGLRIKRLRLDQGEEYTGKPFRQFWSENFIKQKLSAAYILQQDGVAERS*RSIFEMARTKMITANMGHRCWEEAVCSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCMAYVMV 690
H R GH+ V G I + G VC C GK SK+ + R T+ LELVH D+ G + T + GG ++ ++FVDDYSRM Y L+ KSEA +F + + G +K LR D+G E+T F Q+ ++ I ++L+A Y +Q+GVAER R+I EMAR+ + + + + W EAV +AVY +N +PT+ TPYE W G+ P ++HL++FGC+ YV++
Sbjct: 291 HLRYGHLHTAGLRLLNQKEMVRGLPRIDVDG--AVCEGCMYGKQSKRSFPVGQSWRATEPLELVHADLCGPMRTETLGGSKYFLLFVDDYSRMSWVYFLKFKSEAFGQFFKFKALVEKQKGSNLKILRTDRGGEFTSMEFNQYCEKHGIHKELTAPYTPEQNGVAERKNRTIVEMARSMLKSKGLPYNFWAEAVTTAVYLINLSPTKAVMNKTPYEAWSGKRPSVEHLKIFGCIVYVLI 527
BLAST of mRNA_H-paniculata_contig12727.1715.1 vs. uniprot
Match: A0A0A1WGJ2_ZEUCU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Zeugodacus cucurbitae TaxID=28588 RepID=A0A0A1WGJ2_ZEUCU) HSP 1 Score: 165 bits (418), Expect = 2.480e-43 Identity = 95/236 (40.25%), Postives = 131/236 (55.51%), Query Frame = 1
Query: 1 HGRLGHVR--------NLSTVSGQQDIRLSGKLGVCSACEKGKASKQLVKKYREERTTKSLELVHTDITGLVDT-SFGGCRFTIIFVDDYSRMREFYTLRQKSEALWALKQFDRDLARISGLRIKRLRLDQGEEYTGKPFRQFWSENFIKQKLSAAYILQQDGVAERS*RSIFEMARTKMITANMGHRCWEEAVCSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCMAY 681
H R GH+ + + V G I ++ K C C K K K E T + LELVHTD+ G ++ S GG R+ + F+DD+SRM Y++++KSE K F + + IK+LR D G EYT F +F E IK++L+ Y QQ+GVAER R+I EMAR+ ++ AN+ W EAV +AVY NRAPT+ TPYE W+ + P + HLRVFG A+
Sbjct: 404 HNRYGHINFESLKQIVDNNLVRGLNKIDINSKTN-CDTCNKSKICAVPFPKKCERETKQILELVHTDVCGPINVKSVGGARYFLTFIDDFSRMIFIYSIKEKSEVFEKFKTFKNMVENQTQKTIKKLRSDNGTEYTNNKFSEFLKECGIKRQLTVPYTPQQNGVAERVNRTIVEMARSLLVHANLKEELWGEAVHTAVYIRNRAPTKLLKHTTPYEVWYNKKPSVKHLRVFGARAF 638
BLAST of mRNA_H-paniculata_contig12727.1715.1 vs. uniprot
Match: A0A0A1X768_ZEUCU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Zeugodacus cucurbitae TaxID=28588 RepID=A0A0A1X768_ZEUCU) HSP 1 Score: 165 bits (418), Expect = 3.170e-43 Identity = 95/236 (40.25%), Postives = 131/236 (55.51%), Query Frame = 1
Query: 1 HGRLGHVR--------NLSTVSGQQDIRLSGKLGVCSACEKGKASKQLVKKYREERTTKSLELVHTDITGLVDT-SFGGCRFTIIFVDDYSRMREFYTLRQKSEALWALKQFDRDLARISGLRIKRLRLDQGEEYTGKPFRQFWSENFIKQKLSAAYILQQDGVAERS*RSIFEMARTKMITANMGHRCWEEAVCSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCMAY 681
H R GH+ + + V G I ++ K C C K K K E T + LELVHTD+ G ++ S GG R+ + F+DD+SRM Y++++KSE K F + + IK+LR D G EYT F +F E IK++L+ Y QQ+GVAER R+I EMAR+ ++ AN+ W EAV +AVY NRAPT+ TPYE W+ + P + HLRVFG A+
Sbjct: 404 HNRYGHINFESLKQIVDNNLVRGLNKIDINSKTN-CDTCNKSKICAVPFPKKCERETKQILELVHTDVCGPINVKSVGGARYFLTFIDDFSRMIFIYSIKEKSEVFEKFKTFKNMVENQTQKTIKKLRSDNGTEYTNNKFSEFLKECGIKRQLTVPYTPQQNGVAERVNRTIVEMARSLLVHANLKEELWGEAVHTAVYIRNRAPTKLLKHTTPYEVWYNKKPSVKHLRVFGARAF 638
BLAST of mRNA_H-paniculata_contig12727.1715.1 vs. uniprot
Match: A0A251SFG3_HELAN (Putative ribonuclease H-like domain-containing protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251SFG3_HELAN) HSP 1 Score: 164 bits (415), Expect = 8.240e-43 Identity = 95/239 (39.75%), Postives = 134/239 (56.07%), Query Frame = 1
Query: 1 HGRLGHV--------RNLSTVSGQQDIRLSGKLGVCSACEKGKASKQLVKKYREERTTKSLELVHTDITGLVDT-SFGGCRFTIIFVDDYSRMREFYTLRQKSEALWALKQFDRDLARISGLRIKRLRLDQGEEYTGKPFRQFWSENFIKQKLSAAYILQQDGVAERS*RSIFEMARTKMITANMGHRCWEEAVCSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCMAYVMV 690
H R GHV +N V G IR C C GK +++ K + T+ L+LVH+DI G + T S GGCR+ I F+DDY+R Y L+ KSEAL+ K F + S IK LR D+G EY K F+++ N I+ +L+ +Y QQ+GVAER R++ E++R+ M + + W EAV Y LNR T+ TPYE W+G+ P ++HLRVFGC+AY ++
Sbjct: 693 HRRYGHVNMDTLIDMKNKDLVIGLPKIRKDD--STCEGCISGKHARKPFHKKMVWQATEPLQLVHSDICGPMRTESIGGCRYFITFIDDYTRKTWVYFLKFKSEALYHFKNFRVLNEKQSNHVIKTLRTDRGGEYCSKAFQEYLRLNGIRHQLTNSYTPQQNGVAERKNRTLMELSRSMMNIKQLPNCYWAEAVACTTYILNRTITKTRPNITPYEAWNGQKPNVEHLRVFGCLAYALI 929
BLAST of mRNA_H-paniculata_contig12727.1715.1 vs. uniprot
Match: Q9C7Y1_ARATH (Copia-type polyprotein, putative; 28768-32772 n=3 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9C7Y1_ARATH) HSP 1 Score: 164 bits (414), Expect = 1.090e-42 Identity = 94/239 (39.33%), Postives = 139/239 (58.16%), Query Frame = 1
Query: 1 HGRLGHV-----RNLST---VSGQQDIRLSGKLGVCSACEKGKASKQLVKKYREERTTKSLELVHTDITGLVD-TSFGGCRFTIIFVDDYSRMREFYTLRQKSEALWALKQFDRDLARISGLRIKRLRLDQGEEYTGKPFRQFWSENFIKQKLSAAYILQQDGVAERS*RSIFEMARTKMITANMGHRCWEEAVCSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCMAYVMV 690
H R GH+ R+L+ V G L + VC C KGK ++ + K ++T+ L+LVHTDI G ++ S G R+ + F+DD+SR Y L +KSE K+F ++ R SG ++ LR D+G EY + F ++ E IK++L+AAY QQ+GVAER RS+ M R ++ ++ + W EAV AVY LNR+P++ N TP EKW P ++HLR+FG +AY +V
Sbjct: 436 HKRFGHLNHQGLRSLAEKEMVKGLPKFDLGEEEAVCDICLKGKQIRESIPKESAWKSTQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCWTYLLSEKSETFQFFKEFKAEVERESGKKLVCLRSDRGGEYNSREFDEYCKEFGIKRQLTAAYTPQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQYAVYILNRSPSKALNDITPEEKWSSWKPSVEHLRIFGSLAYALV 674 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12727.1715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12727.1715.1 >prot_H-paniculata_contig12727.1715.1 ID=prot_H-paniculata_contig12727.1715.1|Name=mRNA_H-paniculata_contig12727.1715.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp MREFYTLRQKSEALWALKQFDRDLARISGLRIKRLRLDQGEEYTGKPFRQback to top mRNA from alignment at H-paniculata_contig12727:3589..4278- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig12727.1715.1 ID=mRNA_H-paniculata_contig12727.1715.1|Name=mRNA_H-paniculata_contig12727.1715.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=690bp|location=Sequence derived from alignment at H-paniculata_contig12727:3589..4278- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig12727:3589..4278- >mRNA_H-paniculata_contig12727.1715.1 ID=mRNA_H-paniculata_contig12727.1715.1|Name=mRNA_H-paniculata_contig12727.1715.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig12727:3589..4278- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |