mRNA_H-paniculata_contig937.17145.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig937.17145.1
Unique NamemRNA_H-paniculata_contig937.17145.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig937.17145.1 vs. uniprot
Match: A0A6H5L8G2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8G2_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.010e-9
Identity = 34/67 (50.75%), Postives = 40/67 (59.70%), Query Frame = 2 
Query:   86 MDIFILAGELRDAPIDAYRVKGLLIVVTHADSQSAGYLERGSATIDDSTAATSEVPKSAHYAQRGHV 286
            MDI I  G L  A   AYR KG+L+ VTHAD Q+  +L  G AT D + A  SE  K  HYA+ GHV
Sbjct:    1 MDIVIRPGALASASSPAYRHKGILLDVTHADPQAQVHLRNGGATSDGTAAQASEARKRQHYARPGHV 67
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig937.17145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L8G2_9PHAE1.010e-950.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig937contigH-paniculata_contig937:28482..28887 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size408
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931165.8615317-CDS-H-paniculata_contig937:28481..288861622931165.8615317-CDS-H-paniculata_contig937:28481..28886Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig937 28482..28886 +
1691481619.9931505-CDS-H-paniculata_contig937:28481..288861691481619.9931505-CDS-H-paniculata_contig937:28481..28886Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig937 28482..28886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig937.17145.1prot_H-paniculata_contig937.17145.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig937 28482..28886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig937.17145.1

>prot_H-paniculata_contig937.17145.1 ID=prot_H-paniculata_contig937.17145.1|Name=mRNA_H-paniculata_contig937.17145.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp
RNHATAGATGHQEHGRGRRLVYGGPGLPDGHIHPCRRAPRCSHRRLPRQG
SFDRRHARRFPVSRVPRARERYHRRLDRRHFRGAQKRALRSKRTRPSTRV
ISNLPPSRWKALGVWESAERRHLSRWHPPWWGNKG
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mRNA from alignment at H-paniculata_contig937:28482..28887+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig937.17145.1 ID=mRNA_H-paniculata_contig937.17145.1|Name=mRNA_H-paniculata_contig937.17145.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=406bp|location=Sequence derived from alignment at H-paniculata_contig937:28482..28887+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCAATCACGCGACTGCTGGAGCGACTGGGCATCAAGAGCACGGTAGAGG
AAGGAGACTCGTTTACGGCGGACCGGGACTACCGGATGGACATATTCATC
CTTGCAGGAGAGCTCCGAGATGCTCCCATCGACGCCTACCGCGTCAAGGG
TCTTTTGATCGTCGTCACGCACGCAGATTCCCAGTCAGCAGGGTACCTCG
AGCGCGGGAGCGCTACCATCGACGACTCGACCGCCGCCACTTCCGAGGTG
CCCAAAAGCGCGCACTACGCTCAAAGAGGACACGTCCTTCGACGAGAGTA
ATTTCAAACTTACCCCCCTCGCGGTGGAAAGCTTTAGGCGTCTGGGAAAG
TGCGGAGAGGAGGCACTTGAGCAGGTGGCATCCACCGTGGTGGGGGAACA
AGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig937:28482..28887+

>mRNA_H-paniculata_contig937.17145.1 ID=mRNA_H-paniculata_contig937.17145.1|Name=mRNA_H-paniculata_contig937.17145.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig937:28482..28887+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCAATCACGCGACTGCTGGAGCGACTGGGCATCAAGAGCACGGTAGAGG
AAGGAGACTCGTTTACGGCGGACCGGGACTACCGGATGGACATATTCATC
CTTGCAGGAGAGCTCCGAGATGCTCCCATCGACGCCTACCGCGTCAAGGG
TCTTTTGATCGTCGTCACGCACGCAGATTCCCAGTCAGCAGGGTACCTCG
AGCGCGGGAGCGCTACCATCGACGACTCGACCGCCGCCACTTCCGAGGTG
CCCAAAAGCGCGCACTACGCTCAAAGAGGACACGTCCTTCGACGAGAGTA
ATTTCAAACTTACCCCCCTCGCGGTGGAAAGCTTTAGGCGTCTGGGAAAG
TGCGGAGAGGAGGCACTTGAGCAGGTGGCATCCACCGTGGTGGGGGAACA
AGGGGCGCAATCACGCGACTGCTGGAGCGACTGGGCATCAAGAGCACGGT
AGAGGAAGGAGACTCGTTTACGGCGGACCGGGACTACCGGATGGACATAT
TCATCCTTGCAGGAGAGCTCCGAGATGCTCCCATCGACGCCTACCGCGTC
AAGGGTCTTTTGATCGTCGTCACGCACGCAGATTCCCAGTCAGCAGGGTA
CCTCGAGCGCGGGAGCGCTACCATCGACGACTCGACCGCCGCCACTTCCG
AGGTGCCCAAAAGCGCGCACTACGCTCAAAGAGGACACGTCCTTCGACGA
GAGTAATTTCAAACTTACCCCCCTCGCGGTGGAAAGCTTTAGGCGTCTGG
GAAAGTGCGGAGAGGAGGCACTTGAGCAGGTGGCATCCACCGTGGTGGGG
GAACAAGGGG
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