prot_H-paniculata_contig9364.17137.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig9364.17137.1
Unique Name	prot_H-paniculata_contig9364.17137.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	110

Homology

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BLAST of mRNA_H-paniculata_contig9364.17137.1 vs. uniprot
Match: D8LIQ1_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIQ1_ECTSI)

HSP 1 Score: 196 bits (497), Expect = 2.220e-62
Identity = 91/110 (82.73%), Postives = 100/110 (90.91%), Query Frame = 0

Query:    1 GKECTEDCVNNRVYVSGLPSTITEQDLVDKFSGIGIIARIRQKRGYKDQWPFSVRIYKDEATGKPKGDCIIKYEEATSAHAAMKWFDGCDFKGGKIGVVMAAKPTLN-RY 109
            GK+C ++C NNRVYVSGLP+TITE DLV+KFS IGIIARIRQKRGYKDQWPFSVRIYKD+ TGKPKGDCIIKYEE  SAHAA++WFDG DFKGGKIGV MAAKP+LN RY
Sbjct:   49 GKDCGDECDNNRVYVSGLPTTITETDLVEKFSTIGIIARIRQKRGYKDQWPFSVRIYKDDNTGKPKGDCIIKYEEPNSAHAALRWFDGIDFKGGKIGVAMAAKPSLNNRY 158

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BLAST of mRNA_H-paniculata_contig9364.17137.1 vs. uniprot
Match: A0A6H5L8L8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8L8_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 2.040e-58
Identity = 93/114 (81.58%), Postives = 99/114 (86.84%), Query Frame = 0

Query:    1 GKECTEDCVNNRVYVSGLPSTITEQDLVDKFSGIGIIARIRQ----KRGYKDQWPFSVRIYKDEATGKPKGDCIIKYEEATSAHAAMKWFDGCDFKGGKIGVVMAAKPTLN-RY 109
            GK+C ++C NNRVYVSGLP+TITE DLVDKFS IGIIARIRQ    KRGYKDQWPFSVRIYKD  TGKPKGDCIIKYEE  SAHAAM+WFDG DFKGGKIGV MAAKP+LN RY
Sbjct:  233 GKDCGDECDNNRVYVSGLPTTITETDLVDKFSTIGIIARIRQARASKRGYKDQWPFSVRIYKDSNTGKPKGDCIIKYEEPNSAHAAMRWFDGIDFKGGKIGVAMAAKPSLNNRY 346

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BLAST of mRNA_H-paniculata_contig9364.17137.1 vs. uniprot
Match: A0A2R5H0Z6_9STRA (RNA-binding protein, putative n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5H0Z6_9STRA)

HSP 1 Score: 120 bits (302), Expect = 4.570e-31
Identity = 56/103 (54.37%), Postives = 76/103 (73.79%), Query Frame = 0

Query:    2 KECTEDCVNNRVYVSGLPSTITEQDLVDKFSGIGIIARIRQKRGYKDQWPFSVRIYKDEATGKPKGDCIIKYEEATSAHAAMKWFDGCDFKGGKIGVVMAAKP 104
            ++ T+D  N R+Y+SGLPS  TEQ+L D F G+G+IAR +QKRGY DQWP+ + IY D+  GKPKGD +I YE+  +A +A ++F+G +FKG KI V  AAKP
Sbjct:  215 RDPTDD--NTRIYISGLPSDTTEQELADHFGGLGVIARKKQKRGYPDQWPYKITIYTDDQ-GKPKGDAVIGYEDPNAAQSAPEFFNGTEFKGCKINVESAAKP 314

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BLAST of mRNA_H-paniculata_contig9364.17137.1 vs. uniprot
Match: A0A803KS81_CHEQI (RRM domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803KS81_CHEQI)

HSP 1 Score: 115 bits (289), Expect = 4.010e-30
Identity = 49/104 (47.12%), Postives = 75/104 (72.12%), Query Frame = 0

Query:    2 KECTEDCVNNRVYVSGLPSTITEQDLVDKFSGIGIIARIRQKRGYKDQWPFSVRIYKDEATGKPKGDCIIKYEEATSAHAAMKWFDGCDFKGGKIGVVMAAKPT 105
            + C + C N+R+Y+S LP  +  ++L + F  IGI+ARI+QKRGYKDQWP+S+++Y D++ GK KGD ++ YE+ ++AH+A  +F+G D +G KI V MA K  
Sbjct:  104 ENCGDSCDNSRIYISNLPPDVAIEELRELFGSIGIVARIKQKRGYKDQWPYSIKLYTDDS-GKNKGDGVLSYEDPSAAHSARGFFNGYDIRGHKINVTMAEKSA 206

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BLAST of mRNA_H-paniculata_contig9364.17137.1 vs. uniprot
Match: A0A176VKP4_MARPO (RRM domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VKP4_MARPO)

HSP 1 Score: 116 bits (291), Expect = 1.110e-29
Identity = 53/103 (51.46%), Postives = 73/103 (70.87%), Query Frame = 0

Query:    3 ECTEDCVNNRVYVSGLPSTITEQDLVDKFSGIGIIARIRQKRGYKDQWPFSVRIYKDEATGKPKGDCIIKYEEATSAHAAMKWFDGCDFKGGKIGVVMAAKPT 105
            EC + C N R+Y+SGLP  +T  +L + F GIG +ARI+QKRGYKDQWP++V+IY DEA GK KGD ++ YE+ ++AH+A  +F+    +G KI V MA K  
Sbjct:  142 ECGDTCDNTRIYISGLPLDVTVDELRELFGGIGQVARIKQKRGYKDQWPWNVKIYTDEA-GKNKGDAVLTYEDPSAAHSAGSFFNDHSLRGNKIKVTMAEKSA 243

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BLAST of mRNA_H-paniculata_contig9364.17137.1 vs. uniprot
Match: A0A1Y1IL69_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IL69_KLENI)

HSP 1 Score: 116 bits (290), Expect = 3.460e-29
Identity = 52/103 (50.49%), Postives = 73/103 (70.87%), Query Frame = 0

Query:    3 ECTEDCVNNRVYVSGLPSTITEQDLVDKFSGIGIIARIRQKRGYKDQWPFSVRIYKDEATGKPKGDCIIKYEEATSAHAAMKWFDGCDFKGGKIGVVMAAKPT 105
            +C + C N R+Y+SGLP   TE ++ + FSGIG I RIRQKRGYKDQWP++++IY D+A GK KGD ++ YE+  +AH+A  +F+G   +G K+ V MA K  
Sbjct:  169 KCGDSCDNARIYISGLPDNTTEDEIRELFSGIGQIGRIRQKRGYKDQWPWNIKIYTDDA-GKQKGDGVLTYEDPAAAHSAGGFFNGHSLRGSKLTVTMAQKSA 270

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BLAST of mRNA_H-paniculata_contig9364.17137.1 vs. uniprot
Match: A9T0V1_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9T0V1_PHYPA)

HSP 1 Score: 115 bits (289), Expect = 5.590e-29
Identity = 50/104 (48.08%), Postives = 75/104 (72.12%), Query Frame = 0

Query:    2 KECTEDCVNNRVYVSGLPSTITEQDLVDKFSGIGIIARIRQKRGYKDQWPFSVRIYKDEATGKPKGDCIIKYEEATSAHAAMKWFDGCDFKGGKIGVVMAAKPT 105
            + C + C N R+Y+SGLP  + E +L + F GIG +AR++QKRGYKDQWP++++IY+DE+ GK KGD ++ YE+  +AH+A  +F+  + +G KI V MAAK  
Sbjct:  200 ENCGDSCDNARIYISGLPLDVKEDELQELFGGIGQVARVKQKRGYKDQWPYNIKIYQDES-GKNKGDAVLSYEDPHAAHSAGGFFNDYEMRGHKIKVAMAAKSA 302

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BLAST of mRNA_H-paniculata_contig9364.17137.1 vs. uniprot
Match: A0A2K1JP98_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JP98_PHYPA)

HSP 1 Score: 115 bits (289), Expect = 5.890e-29
Identity = 51/104 (49.04%), Postives = 75/104 (72.12%), Query Frame = 0

Query:    2 KECTEDCVNNRVYVSGLPSTITEQDLVDKFSGIGIIARIRQKRGYKDQWPFSVRIYKDEATGKPKGDCIIKYEEATSAHAAMKWFDGCDFKGGKIGVVMAAKPT 105
            + C + C N R+Y+SGLP  + E +L + F GIG +ARI+QKRGYKDQWP++++IY+DE+ GK KGD ++ YE+  +AH+A  +F+  + +G KI V MAAK  
Sbjct:  203 ENCGDSCDNARIYISGLPLDVKEDELRELFGGIGQVARIKQKRGYKDQWPYNIKIYQDES-GKNKGDAVLSYEDPHAAHSAGGFFNDYEMRGHKIKVAMAAKSA 305

[Close]

BLAST of mRNA_H-paniculata_contig9364.17137.1 vs. uniprot
Match: A0A803LCU5_CHEQI (RRM domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LCU5_CHEQI)

HSP 1 Score: 115 bits (289), Expect = 6.520e-29
Identity = 49/104 (47.12%), Postives = 75/104 (72.12%), Query Frame = 0

Query:    2 KECTEDCVNNRVYVSGLPSTITEQDLVDKFSGIGIIARIRQKRGYKDQWPFSVRIYKDEATGKPKGDCIIKYEEATSAHAAMKWFDGCDFKGGKIGVVMAAKPT 105
            + C + C N+R+Y+S LP  +  ++L + F  IGI+ARI+QKRGYKDQWP+S+++Y D++ GK KGD ++ YE+ ++AH+A  +F+G D +G KI V MA K  
Sbjct:  203 ENCGDSCDNSRIYISNLPPDVAIEELRELFGSIGIVARIKQKRGYKDQWPYSIKLYTDDS-GKNKGDGVLSYEDPSAAHSARGFFNGYDIRGHKINVTMAEKSA 305

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BLAST of mRNA_H-paniculata_contig9364.17137.1 vs. uniprot
Match: A0A1J3IQ37_NOCCA (Transcription initiation factor TFIID subunit 15b n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3IQ37_NOCCA)

HSP 1 Score: 112 bits (280), Expect = 1.020e-28
Identity = 49/103 (47.57%), Postives = 70/103 (67.96%), Query Frame = 0

Query:    3 ECTEDCVNNRVYVSGLPSTITEQDLVDKFSGIGIIARIRQKRGYKDQWPFSVRIYKDEATGKPKGDCIIKYEEATSAHAAMKWFDGCDFKGGKIGVVMAAKPT 105
            +C + C N R+Y+S LP  +T  +L D F GIG + RI+QKRGYKDQWP++++IY DE  G  KGD  + YE+ ++AH+A  +F+  + +G KI V MAAK  
Sbjct:   69 DCDDTCDNARIYISNLPPDVTTDELKDLFGGIGQVGRIKQKRGYKDQWPYNIKIYTDEK-GNNKGDAALAYEDPSAAHSAGGFFNNYEMRGNKISVTMAAKSA 170

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig9364.17137.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig9364.17137.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LIQ1_ECTSI	2.220e-62	82.73	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6H5L8L8_9PHAE	2.040e-58	81.58	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A2R5H0Z6_9STRA	4.570e-31	54.37	RNA-binding protein, putative n=1 Tax=Hondaea ferm...	[more]
A0A803KS81_CHEQI	4.010e-30	47.12	RRM domain-containing protein n=1 Tax=Chenopodium ...	[more]
A0A176VKP4_MARPO	1.110e-29	51.46	RRM domain-containing protein n=2 Tax=Marchantia p...	[more]
A0A1Y1IL69_KLENI	3.460e-29	50.49	Uncharacterized protein n=1 Tax=Klebsormidium nite...	[more]
A9T0V1_PHYPA	5.590e-29	48.08	Predicted protein n=1 Tax=Physcomitrium patens Tax...	[more]
A0A2K1JP98_PHYPA	5.890e-29	49.04	Uncharacterized protein n=2 Tax=Physcomitrium pate...	[more]
A0A803LCU5_CHEQI	6.520e-29	47.12	RRM domain-containing protein n=1 Tax=Chenopodium ...	[more]
A0A1J3IQ37_NOCCA	1.020e-28	47.57	Transcription initiation factor TFIID subunit 15b ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 12..99 e-value: 4.7E-10 score: 49.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 13..43 e-value: 1.8E-5 score: 24.5 coord: 53..95 e-value: 2.3E-4 score: 20.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 11..103 score: 12.492
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 10..101 e-value: 9.4E-19 score: 69.4
IPR033109	RNA-binding protein EWS	PANTHER	PTHR23238:SF3	RNA-BINDING PROTEIN EWS	coord: 3..105
IPR034870	TAF15/EWS/TLS family	PANTHER	PTHR23238	RNA BINDING PROTEIN	coord: 3..105
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..105

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig9364	contig	H-paniculata_contig9364:5089..9089 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig9364.17137.1	mRNA_H-paniculata_contig9364.17137.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig9364 3777..9089 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig9364.17137.1 ID=prot_H-paniculata_contig9364.17137.1|Name=mRNA_H-paniculata_contig9364.17137.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
GKECTEDCVNNRVYVSGLPSTITEQDLVDKFSGIGIIARIRQKRGYKDQW
PFSVRIYKDEATGKPKGDCIIKYEEATSAHAAMKWFDGCDFKGGKIGVVM
AAKPTLNRY*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR033109	EWSR1
IPR034870	TET_fam
IPR035979	RBD_domain_sf