mRNA_H-paniculata_contig9364.17137.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-paniculata_contig9364.17137.1 vs. uniprot
Match: D8LIQ1_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIQ1_ECTSI) HSP 1 Score: 194 bits (492), Expect = 8.130e-56 Identity = 91/110 (82.73%), Postives = 100/110 (90.91%), Query Frame = 1 Query: 1 GKECTEDCVNNRVYVSGLPSTITEQDLVDKFSGIGIIARIRQKRGYKDQWPFSVRIYKDEATGKPKGDCIIKYEEATSAHAAMKWFDGCDFKGGKIGVVMAAKPTLN-RY 327 GK+C ++C NNRVYVSGLP+TITE DLV+KFS IGIIARIRQKRGYKDQWPFSVRIYKD+ TGKPKGDCIIKYEE SAHAA++WFDG DFKGGKIGV MAAKP+LN RY Sbjct: 49 GKDCGDECDNNRVYVSGLPTTITETDLVEKFSTIGIIARIRQKRGYKDQWPFSVRIYKDDNTGKPKGDCIIKYEEPNSAHAALRWFDGIDFKGGKIGVAMAAKPSLNNRY 158
BLAST of mRNA_H-paniculata_contig9364.17137.1 vs. uniprot
Match: A0A6H5L8L8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8L8_9PHAE) HSP 1 Score: 190 bits (482), Expect = 6.510e-52 Identity = 93/114 (81.58%), Postives = 99/114 (86.84%), Query Frame = 1 Query: 1 GKECTEDCVNNRVYVSGLPSTITEQDLVDKFSGIGIIARIRQ----KRGYKDQWPFSVRIYKDEATGKPKGDCIIKYEEATSAHAAMKWFDGCDFKGGKIGVVMAAKPTLN-RY 327 GK+C ++C NNRVYVSGLP+TITE DLVDKFS IGIIARIRQ KRGYKDQWPFSVRIYKD TGKPKGDCIIKYEE SAHAAM+WFDG DFKGGKIGV MAAKP+LN RY Sbjct: 233 GKDCGDECDNNRVYVSGLPTTITETDLVDKFSTIGIIARIRQARASKRGYKDQWPFSVRIYKDSNTGKPKGDCIIKYEEPNSAHAAMRWFDGIDFKGGKIGVAMAAKPSLNNRY 346
BLAST of mRNA_H-paniculata_contig9364.17137.1 vs. uniprot
Match: A0A2R5H0Z6_9STRA (RNA-binding protein, putative n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5H0Z6_9STRA) HSP 1 Score: 119 bits (298), Expect = 2.960e-26 Identity = 56/103 (54.37%), Postives = 76/103 (73.79%), Query Frame = 1 Query: 4 KECTEDCVNNRVYVSGLPSTITEQDLVDKFSGIGIIARIRQKRGYKDQWPFSVRIYKDEATGKPKGDCIIKYEEATSAHAAMKWFDGCDFKGGKIGVVMAAKP 312 ++ T+D N R+Y+SGLPS TEQ+L D F G+G+IAR +QKRGY DQWP+ + IY D+ GKPKGD +I YE+ +A +A ++F+G +FKG KI V AAKP Sbjct: 215 RDPTDD--NTRIYISGLPSDTTEQELADHFGGLGVIARKKQKRGYPDQWPYKITIYTDDQ-GKPKGDAVIGYEDPNAAQSAPEFFNGTEFKGCKINVESAAKP 314
BLAST of mRNA_H-paniculata_contig9364.17137.1 vs. uniprot
Match: A0A803KS81_CHEQI (RRM domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803KS81_CHEQI) HSP 1 Score: 114 bits (285), Expect = 1.750e-25 Identity = 49/102 (48.04%), Postives = 75/102 (73.53%), Query Frame = 1 Query: 4 KECTEDCVNNRVYVSGLPSTITEQDLVDKFSGIGIIARIRQKRGYKDQWPFSVRIYKDEATGKPKGDCIIKYEEATSAHAAMKWFDGCDFKGGKIGVVMAAK 309 + C + C N+R+Y+S LP + ++L + F IGI+ARI+QKRGYKDQWP+S+++Y D++ GK KGD ++ YE+ ++AH+A +F+G D +G KI V MA K Sbjct: 104 ENCGDSCDNSRIYISNLPPDVAIEELRELFGSIGIVARIKQKRGYKDQWPYSIKLYTDDS-GKNKGDGVLSYEDPSAAHSARGFFNGYDIRGHKINVTMAEK 204
BLAST of mRNA_H-paniculata_contig9364.17137.1 vs. uniprot
Match: A0A176VKP4_MARPO (RRM domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VKP4_MARPO) HSP 1 Score: 115 bits (287), Expect = 5.220e-25 Identity = 53/101 (52.48%), Postives = 73/101 (72.28%), Query Frame = 1 Query: 7 ECTEDCVNNRVYVSGLPSTITEQDLVDKFSGIGIIARIRQKRGYKDQWPFSVRIYKDEATGKPKGDCIIKYEEATSAHAAMKWFDGCDFKGGKIGVVMAAK 309 EC + C N R+Y+SGLP +T +L + F GIG +ARI+QKRGYKDQWP++V+IY DEA GK KGD ++ YE+ ++AH+A +F+ +G KI V MA K Sbjct: 142 ECGDTCDNTRIYISGLPLDVTVDELRELFGGIGQVARIKQKRGYKDQWPWNVKIYTDEA-GKNKGDAVLTYEDPSAAHSAGSFFNDHSLRGNKIKVTMAEK 241
BLAST of mRNA_H-paniculata_contig9364.17137.1 vs. uniprot
Match: A0A1Y1IL69_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IL69_KLENI) HSP 1 Score: 114 bits (286), Expect = 1.590e-24 Identity = 52/101 (51.49%), Postives = 73/101 (72.28%), Query Frame = 1 Query: 7 ECTEDCVNNRVYVSGLPSTITEQDLVDKFSGIGIIARIRQKRGYKDQWPFSVRIYKDEATGKPKGDCIIKYEEATSAHAAMKWFDGCDFKGGKIGVVMAAK 309 +C + C N R+Y+SGLP TE ++ + FSGIG I RIRQKRGYKDQWP++++IY D+A GK KGD ++ YE+ +AH+A +F+G +G K+ V MA K Sbjct: 169 KCGDSCDNARIYISGLPDNTTEDEIRELFSGIGQIGRIRQKRGYKDQWPWNIKIYTDDA-GKQKGDGVLTYEDPAAAHSAGGFFNGHSLRGSKLTVTMAQK 268
BLAST of mRNA_H-paniculata_contig9364.17137.1 vs. uniprot
Match: A9T0V1_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9T0V1_PHYPA) HSP 1 Score: 114 bits (285), Expect = 2.500e-24 Identity = 50/102 (49.02%), Postives = 75/102 (73.53%), Query Frame = 1 Query: 4 KECTEDCVNNRVYVSGLPSTITEQDLVDKFSGIGIIARIRQKRGYKDQWPFSVRIYKDEATGKPKGDCIIKYEEATSAHAAMKWFDGCDFKGGKIGVVMAAK 309 + C + C N R+Y+SGLP + E +L + F GIG +AR++QKRGYKDQWP++++IY+DE+ GK KGD ++ YE+ +AH+A +F+ + +G KI V MAAK Sbjct: 200 ENCGDSCDNARIYISGLPLDVKEDELQELFGGIGQVARVKQKRGYKDQWPYNIKIYQDES-GKNKGDAVLSYEDPHAAHSAGGFFNDYEMRGHKIKVAMAAK 300
BLAST of mRNA_H-paniculata_contig9364.17137.1 vs. uniprot
Match: A0A2K1JP98_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JP98_PHYPA) HSP 1 Score: 114 bits (285), Expect = 2.640e-24 Identity = 51/102 (50.00%), Postives = 75/102 (73.53%), Query Frame = 1 Query: 4 KECTEDCVNNRVYVSGLPSTITEQDLVDKFSGIGIIARIRQKRGYKDQWPFSVRIYKDEATGKPKGDCIIKYEEATSAHAAMKWFDGCDFKGGKIGVVMAAK 309 + C + C N R+Y+SGLP + E +L + F GIG +ARI+QKRGYKDQWP++++IY+DE+ GK KGD ++ YE+ +AH+A +F+ + +G KI V MAAK Sbjct: 203 ENCGDSCDNARIYISGLPLDVKEDELRELFGGIGQVARIKQKRGYKDQWPYNIKIYQDES-GKNKGDAVLSYEDPHAAHSAGGFFNDYEMRGHKIKVAMAAK 303
BLAST of mRNA_H-paniculata_contig9364.17137.1 vs. uniprot
Match: A0A803LCU5_CHEQI (RRM domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LCU5_CHEQI) HSP 1 Score: 114 bits (285), Expect = 2.930e-24 Identity = 49/102 (48.04%), Postives = 75/102 (73.53%), Query Frame = 1 Query: 4 KECTEDCVNNRVYVSGLPSTITEQDLVDKFSGIGIIARIRQKRGYKDQWPFSVRIYKDEATGKPKGDCIIKYEEATSAHAAMKWFDGCDFKGGKIGVVMAAK 309 + C + C N+R+Y+S LP + ++L + F IGI+ARI+QKRGYKDQWP+S+++Y D++ GK KGD ++ YE+ ++AH+A +F+G D +G KI V MA K Sbjct: 203 ENCGDSCDNSRIYISNLPPDVAIEELRELFGSIGIVARIKQKRGYKDQWPYSIKLYTDDS-GKNKGDGVLSYEDPSAAHSARGFFNGYDIRGHKINVTMAEK 303
BLAST of mRNA_H-paniculata_contig9364.17137.1 vs. uniprot
Match: A0A1J3IQ37_NOCCA (Transcription initiation factor TFIID subunit 15b n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3IQ37_NOCCA) HSP 1 Score: 110 bits (276), Expect = 3.410e-24 Identity = 49/101 (48.51%), Postives = 70/101 (69.31%), Query Frame = 1 Query: 7 ECTEDCVNNRVYVSGLPSTITEQDLVDKFSGIGIIARIRQKRGYKDQWPFSVRIYKDEATGKPKGDCIIKYEEATSAHAAMKWFDGCDFKGGKIGVVMAAK 309 +C + C N R+Y+S LP +T +L D F GIG + RI+QKRGYKDQWP++++IY DE G KGD + YE+ ++AH+A +F+ + +G KI V MAAK Sbjct: 69 DCDDTCDNARIYISNLPPDVTTDELKDLFGGIGQVGRIKQKRGYKDQWPYNIKIYTDEK-GNNKGDAALAYEDPSAAHSAGGFFNNYEMRGNKISVTMAAK 168 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9364.17137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9364.17137.1 >prot_H-paniculata_contig9364.17137.1 ID=prot_H-paniculata_contig9364.17137.1|Name=mRNA_H-paniculata_contig9364.17137.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp GKECTEDCVNNRVYVSGLPSTITEQDLVDKFSGIGIIARIRQKRGYKDQWback to top mRNA from alignment at H-paniculata_contig9364:3777..9089- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9364.17137.1 ID=mRNA_H-paniculata_contig9364.17137.1|Name=mRNA_H-paniculata_contig9364.17137.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5313bp|location=Sequence derived from alignment at H-paniculata_contig9364:3777..9089- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9364:3777..9089- >mRNA_H-paniculata_contig9364.17137.1 ID=mRNA_H-paniculata_contig9364.17137.1|Name=mRNA_H-paniculata_contig9364.17137.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig9364:3777..9089- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |