mRNA_H-paniculata_contig12721.1713.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig12721.1713.1 vs. uniprot
Match: A0A6H5JGP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP4_9PHAE) HSP 1 Score: 193 bits (491), Expect = 3.050e-46 Identity = 125/319 (39.18%), Postives = 170/319 (53.29%), Query Frame = 3
Query: 18 MVLLGSPMVDATLEDVQGLQTVIEVLKDEMGMI--AEGGEGAXXXXXXXXDGSRVVVTMPEDAPQNTHRTPWVQCDRCFKWRKMPWFVNTELLGDKFYCEDNRWNLEENSCEVDPEEITNEDVSQMSVIFSGTVKVDK-FAVGDWLDVWCRRTKIWYPAKVVRVDERLKRIKVHFHKWQKRFDEWVNMEDSDRIAKIHAHTQPVLATAKSIGLKKGGDAEPETA-----------SDGGEMSDNSRNSHGAAXXXXXXXXXXSKSKGAAQPPARSVTPTIASTESDYVYYGDGGLPGKRSMTREERTAARLSRRPPEDH 932
+VLLGSPMVDATLED QGL+ VIE+LK E G+ A G EGA + M ED PQN+ TPW QCDRC KWR++PW ++ E L + + CE+N W+ E SC+V EI +E+ + SVI + +K V W+DV+C +T WYPAKV++ D R+ V F W +R+++WV+ + DRI ++H HTQ V K + G + GG SD R + G+ S K A A++ TP +SD+VYY G P K S++REER AR +R P H
Sbjct: 2807 LVLLGSPMVDATLEDTQGLKEVIEILKRETGLSDGANGDEGAS------------TLRMEEDGPQNSTPTPWAQCDRCLKWRRIPWHIDPETLPELWTCENNTWDPETASCDV--AEIVDEEDMEASVIAGSAIVEEKALVVSSWIDVFCNQTHKWYPAKVIKEDREGDRVLVQFFGWSERYNQWVSKKSKDRIRRVHTHTQEVAPARKWLNKMYGRGSXXXXXXXXXXXXXXLPKKGG--SDGDRGASGSGCG--------SNGKRKAAVLAKTATP-----KSDFVYYD--GAP-KSSLSREERIVARRNRTPAGPH 3093
BLAST of mRNA_H-paniculata_contig12721.1713.1 vs. uniprot
Match: D8LRP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP6_ECTSI) HSP 1 Score: 188 bits (478), Expect = 1.110e-44 Identity = 97/224 (43.30%), Postives = 136/224 (60.71%), Query Frame = 3
Query: 18 MVLLGSPMVDATLEDVQGLQTVIEVLKDEMGMIAEGGEGAXXXXXXXXDGSRVVVTMPEDAPQNTHRTPWVQCDRCFKWRKMPWFVNTELLGDKFYCEDNRWNLEENSCEVDPEEITNEDVSQMSVIFSGTVKVDK-FAVGDWLDVWCRRTKIWYPAKVVRVDERLKRIKVHFHKWQKRFDEWVNMEDSDRIAKIHAHTQPVLATAKSI----GLKKGGDAEPE 674
+VLLGSPMVDATLED QGL+ VIE+LK E G+ +EG G D + + M ED PQN+ TPW QCDRC KWR++PW ++ E L + + CE+N W+ E SC+V E+ +E+ + SVI + +K V W+DV+C +T WYPAKV++ D R+ V F W +R+++WV+ + DRI ++H HTQ V K + G GG +E E
Sbjct: 2632 LVLLGSPMVDATLEDTQGLKEVIEILKRETGL-SEGANG---------DEGAITLRMEEDGPQNSTPTPWAQCDRCLKWRRIPWHIDPETLPELWTCENNTWDPETASCDV--AEVVDEEDMEASVIAGSAIVEEKALVVSSWIDVFCNQTHKWYPAKVIKEDREGDRVLVQFFGWSERYNQWVSKKSKDRIRRVHTHTQEVAPARKWLNKMYGPGSGGGSEAE 2843
BLAST of mRNA_H-paniculata_contig12721.1713.1 vs. uniprot
Match: A0A7S2ASC1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ASC1_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 8.010e-18 Identity = 65/184 (35.33%), Postives = 88/184 (47.83%), Query Frame = 3
Query: 69 GLQTVIEVLKDEMGMIAEGGEGAXXXXXXXXDGSRVVVTMPEDAPQNTHRTPWVQCDRCFKWRKMPWFVNTELLGDKFY--CED-NRWNLEEN-------SCEVDPEEITNEDVSQMSVIFSGTVKVDKFAVGDWLDVWCRRTKIWYPAKVVRVDERLKRIKVHFHKWQKRFDEWVNMEDSDRI 590
GLQTV E L +E+G+ G GS V+ D N WVQC++C KWR++PWFV+ E LG+ F C D N+WN ++ SC+ PE+ + + V G +D WC + WY AKVVR R I +HF W K DEW+ + DSDR+
Sbjct: 1 GLQTVTETLHEELGLDKVKSNGVNELKPMDT-GSDDVIDKALDEKTNN----WVQCEKCEKWRRLPWFVDLEELGENFSFTCSDGNKWNRGDSNKSSLTLSCDT-PEDGYDPSSEIVRAATGDRVPAGLLQAGLEVDAWCTKNMRWYEAKVVR--RRDDDILIHFKGWNKSADEWIAV-DSDRL 175
BLAST of mRNA_H-paniculata_contig12721.1713.1 vs. uniprot
Match: A0A836CJD9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJD9_9STRA) HSP 1 Score: 100 bits (248), Expect = 1.800e-17 Identity = 56/167 (33.53%), Postives = 84/167 (50.30%), Query Frame = 3
Query: 192 EDAPQNTHRTPWVQCDRCFKWRKMPWFVNTELLGDKFYCEDNRWNLEENSCEVDPEEITNEDVSQMSVIFSGTVKVDKFAVGD-------------------WLDVWCRRTKIWYPAKVVRVDERLKRIKVHFHKWQKRFDEWVNMEDSDRIAKIHAHTQPVLATAK 635
ED P++ ++ WVQCDRC +WR+MPW + + D F C DN W + SC+V+ EE + V TV + GD W+D +C +T+ WYPAK++ V+ R+KVHF+ W ++DEW+ + +HA T+ TAK
Sbjct: 1774 EDQPES--KSLWVQCDRCKRWRRMPWHCSEADVPDAFVCADNAWAPQFGSCDVEEEE-----EGEGEVWSDATVPAAEGDGGDMGGXXXXXXXXXXGLLEGLWIDAYCSKTEQWYPAKLLSVEPG--RVKVHFNMWNPKYDEWLQ-RGKGYLQDLHARTRTTRHTAK 1930
BLAST of mRNA_H-paniculata_contig12721.1713.1 vs. uniprot
Match: K0RQ88_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RQ88_THAOC) HSP 1 Score: 99.0 bits (245), Expect = 3.760e-17 Identity = 61/160 (38.12%), Postives = 87/160 (54.37%), Query Frame = 3
Query: 186 MPEDAPQNTHRTPWVQCD--RCFKWRKMPWFVNTELLGDKFYCEDNRWNLEENSCEVDPEEITNEDVSQMSVIFSGTVKVDKFAVGDWLDVWCRRTKIWYPAKVVRVD--ERLKRIKVHFHKWQKRFDEWVNMEDSDRIAKIHAHTQPVLATAKSIGLKK 653
MP A N WVQC+ +C KWRK+PW V+ +LL +KF+C+DN+WN + SCE PE+ + D+ V F D F +G W DV + ++ A+VV VD ++KR+K HF+K DEW+++ S RIA + Q A G K
Sbjct: 791 MPAQAVAN-----WVQCENPKCLKWRKLPWHVDVDLLPEKFFCKDNKWNPGKRSCES-PED--DWDMDDAPVKFD--TNNDNFEIGAWFDVQREKKISYHEAQVVAVDLKSKVKRVKFHFYKLSSERDEWIDI-GSPRIAPHPSFVQHSYTPAPRAGYGK 939
BLAST of mRNA_H-paniculata_contig12721.1713.1 vs. uniprot
Match: A0A7S2YL82_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YL82_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 3.690e-16 Identity = 72/229 (31.44%), Postives = 109/229 (47.60%), Query Frame = 3
Query: 9 GEAMVLLGSPMVDATLE-DVQGLQTVIEVLKDEMGMIAEGGEGAXXXXXXXXDGSRVVVTMPEDAPQNTHRTPWVQCDR--CFKWRKMPWFVNTELLGDKFYCEDNRWNLEENSCEVDPEEITNED--VSQMSVIFSGTVKVDKFA---------VGDWLDVW--CRRTKIWYPAKVVRVD--ERLKRIKVHFHKWQKRFDEWVNMEDSDRIAKIHAHTQPVLATAKSI 641
GE V GSP++D + D G+ V+E L D ++ GG+ A ++ ++ P WVQC+ C KWRKMPW V+ +LL +KF+C+DN+W+ N+CE ++ +D V + +K D+F VG DV R K + V VD ++KR+K H++K DEW+ S RIA +H+ T P+ K I
Sbjct: 153 GEISVRFGSPVLDFLVSGDESGIFAVLEEL-DADNKVSTGGDDAD-----------LLTSVDRGRPAQAV-CRWVQCENPDCLKWRKMPWHVDIDLLPEKFFCKDNKWDKLRNNCEAPEDDWDKDDKIVGSDGKVEGSPIKKDQFTSPSHEWSFRVGAKFDVLRQTRGAKKFCVGTVTHVDFSGKVKRVKFHYNKTPSESDEWIPF-GSKRIAPLHSKTTPISKKRKLI 367
BLAST of mRNA_H-paniculata_contig12721.1713.1 vs. uniprot
Match: A0A7S2KB67_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KB67_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 6.970e-15 Identity = 67/211 (31.75%), Postives = 105/211 (49.76%), Query Frame = 3
Query: 27 LGSPMVDATLEDV-QGLQTVIEVLKDEMGMIAEGGEGAXXXXXXXXDGSRVVVTMPEDAPQNTHRTPWVQCD--RCFKWRKMPWFVNTELLGDKFYCEDNRWNLEENSCEVDPEEITNEDVSQMSVIFSGTVKVDKFAVGDWLDVWCRRTKIWYP-AKVVRVD--ERLKRIKVHFHKWQKRFDEWVNMEDSDRIAKIHAHT-QPVLATAKS 638
+GSP++D + + + ++ + LK + E + R+ T+ E P WVQC+ +C KWRK+PW V+ +LL DKFYC+DN WN +C+ ++ D+ + F F VG W DV R KI Y A+VV +D +KR+K F++ + DEWV + S RIA H++T +P + A +
Sbjct: 1330 MGSPIIDYLITGMDENIKKISAALKGK----EEESDETKSKRSKLSTSDRLQSTVDEGMPAQAVAN-WVQCEDPKCLKWRKLPWHVDVDLLPDKFYCKDNVWNPNRQTCDSTEDDW---DMDDAPIKFDSN---QNFEVGAWFDVQ-REGKIGYSEAQVVELDFNSNVKRVKFTFYRLKNDRDEWVEV-GSPRIAPHHSYTPRPFIGGAST 1527
BLAST of mRNA_H-paniculata_contig12721.1713.1 vs. uniprot
Match: B7FW59_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FW59_PHATC) HSP 1 Score: 85.1 bits (209), Expect = 7.020e-13 Identity = 68/230 (29.57%), Postives = 109/230 (47.39%), Query Frame = 3
Query: 3 GAGEAMVLL-GSPMVD--ATLEDVQGLQTVIEVLKDEMGMIAEGGEGAXXXXXXXXDGSRVVVTMPEDAPQNTHRTPWVQCDR--CFKWRKMPWFVNTELLGDKFYCEDNRWNLEENSCEVDPEEITNED--VSQMSVIFSGTVKVDK-----------FAVGDWLDVWCRRTKIWYPAKVVRVD--ERLKRIKVHFHKWQKRFDEWVNMEDSDRIAKIHAHTQPVLATA 632
G+ A +LL GSP++D AT ++ ++++VL G+ S V+++ + + WVQC+ C KWRK+PW V+ +LL +KFYC+DN WN NSC ++ N D V + + ++ K F G D+ R + + +VV+VD ++KRI HF K ++DEW+ S RI+ +H+ P A A
Sbjct: 1717 GSSSAQLLLFGSPVIDFLATGDE----SSILDVL----------GDLNSDNKIESKSASAVMLSSVDKGRPAQAISTWVQCENPVCLKWRKVPWHVDVDLLPEKFYCKDNAWNPNANSCTKAEDDWDNADAMVGRDGKVEGSPIRKKKHSELSPIEESSFTAGARFDIL--RKEKYVVGRVVKVDFSGKVKRILFHFLKKHSKYDEWIEF-GSPRISSLHSKIAPRAAKA 1929
BLAST of mRNA_H-paniculata_contig12721.1713.1 vs. uniprot
Match: X6NEB3_RETFI (Mastermind n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NEB3_RETFI) HSP 1 Score: 57.8 bits (138), Expect = 5.830e-5 Identity = 24/42 (57.14%), Postives = 32/42 (76.19%), Query Frame = 3
Query: 225 WVQCDRCFKWRKMPWFVNTELLGDK-FYCEDNRWNLEENSCE 347
W+QCDRCFKWR++P V+ E LG+K +YCE N W+ N+CE
Sbjct: 157 WIQCDRCFKWRRIPNTVSDEELGEKAWYCELNLWDPLHNACE 198 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12721.1713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12721.1713.1 >prot_H-paniculata_contig12721.1713.1 ID=prot_H-paniculata_contig12721.1713.1|Name=mRNA_H-paniculata_contig12721.1713.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=827bp MVLLGSPMVDATLEDVQGLQTVIEVLKDEMGMIAEGGEGAGAGAGAGGDGback to top mRNA from alignment at H-paniculata_contig12721:624..7451+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig12721.1713.1 ID=mRNA_H-paniculata_contig12721.1713.1|Name=mRNA_H-paniculata_contig12721.1713.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6828bp|location=Sequence derived from alignment at H-paniculata_contig12721:624..7451+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig12721:624..7451+ >mRNA_H-paniculata_contig12721.1713.1 ID=mRNA_H-paniculata_contig12721.1713.1|Name=mRNA_H-paniculata_contig12721.1713.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4962bp|location=Sequence derived from alignment at H-paniculata_contig12721:624..7451+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |