mRNA_H-paniculata_contig9355.17130.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9355.17130.1
Unique NamemRNA_H-paniculata_contig9355.17130.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig9355.17130.1 vs. uniprot
Match: A0A6H5K1V2_9PHAE (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1V2_9PHAE)

HSP 1 Score: 391 bits (1005), Expect = 1.760e-126
Identity = 235/438 (53.65%), Postives = 281/438 (64.16%), Query Frame = 3
Query:   36 MGEFGGKACFYPGCRQHDFLPLRCSACGLVFCTNHSAI-TDHDCQHGEAYLSSREHHQTRSATNSHYHPLAWSKPSEVMAAVTSRFDGREGELNAEVAHYNIAKVSESQA---KAGSPDKLLKNAQIAVDKAMTAKGKRVSTQVHRMLLKSKAVGDKKLRMEDRFFLEVHYSGNEDDVHHLFFSRLWTVGRTLDDIIKTRRRYLRLKAGEEEQPLELAPAGSPHGFPLGVILQDLAPE-LTSFDVITVRPRSSHAVTTATTRAETTKTGESDTLPEMSKGVNKAPLVDPVTSSNAEVQSSIQGRGMDNEMGGSVAEVTPRAEKEEDCMQKAVASSDVSSGE---------------------MFIMIGHGKAIYELGGIQPQTCTVLDLKRRVELLTGVPFNCQKLLFKGILKDNDSIASTKIVDGAKVMLLGQAPGA 1271
            M EFG K C YPGCRQHDFLP  C+AC  VFC++H AI + H C HGE YL+SR     R A     H L+ SKPSEVM+AVTSRFDGRE ELNA   H+NI K SE +A    AG+PDKLL+N+Q+A+DKA T KGKRVSTQVHRMLLK+KAVGDKKLRMEDRFFLEVHY GN+ DVHHLFFSRLWTVGR LDDI+KTRRR+LRLKAGEE +PLELA  G+  G P G I  +L PE L  FD + VRPR+       ++ ++ +  G S      + G+N     D +  S   +    +         G V        K     ++AVA S V+S                       M I + HGK++YELGG+ P   +VLDLKRR+E +TGVPF  QKLLFKGIL+D D I +TKIV+GAKVMLLG A  A
Sbjct:    1 MAEFGAKLCSYPGCRQHDFLPYACAACRQVFCSDHMAIGSGHRCDHGEEYLASRNGKGGRIAAPGS-HRLSLSKPSEVMSAVTSRFDGREKELNAVTTHFNI-KASEGEAGEGSAGAPDKLLRNSQLAMDKAATEKGKRVSTQVHRMLLKAKAVGDKKLRMEDRFFLEVHYCGNDTDVHHLFFSRLWTVGRALDDILKTRRRHLRLKAGEEARPLELARVGASSGLPTGGIFTNLPPEQLQLFDAVMVRPRTLPRA--GSSASDISAEGGSSDSTVAAPGLNVESAPDDLKGSG--IGGDEEPSEQQQRQTGHVLSTCAVGAKSSG-FEEAVAGSGVTSAXXXXXXXXXXXXXXXXXXXXXGMTITVCHGKSVYELGGVMPDRMSVLDLKRRLEPITGVPFLRQKLLFKGILRDGDKIGATKIVEGAKVMLLGTAAAA 431          
BLAST of mRNA_H-paniculata_contig9355.17130.1 vs. uniprot
Match: D8LBN6_ECTSI (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBN6_ECTSI)

HSP 1 Score: 269 bits (688), Expect = 1.430e-80
Identity = 161/321 (50.16%), Postives = 197/321 (61.37%), Query Frame = 3
Query:  381 KLLKNAQIAVDKAMTAKGKRVSTQVHRMLLKSKAVGDKKLRMEDRFFLEVHYSGNEDDVHHLFFSRLWTVGRTLDDIIKTRRRYLRLKAGEEEQPLELAPAGSPHGFPLGVILQDLAPE-LTSFDVITVRPRSSHAVTTATTRAETTKTGESDTLPEMSKGVNKAPLVDPVTSSNAEVQSSIQGRGMDNEMGGSVAEVTPRAEKEEDCMQKAVASSDVSSGE--------------------MFIMIGHGKAIYELGGIQPQTCTVLDLKRRVELLTGVPFNCQKLLFKGILKDNDSIASTKIVDGAKVMLLGQAPGAGGK 1280
            +LLKN+Q+A+DKA T KGKR+STQVHRMLLK+KAVGDKKLRMEDRFFLEVHY GN+ DVHHLFFSRLWTVGR LD I+KTRRR++RLKAGEE +PLELA  G+  G P G IL +L PE L SFD + VRPR+       ++ ++T+  G S      + G+N     D +  S   +    +         G V        K   C +    S                           M I +GHGK++YELGG+ P   +VLDLKRR+E +TGVPF  QKLLFKGIL+D D I +TKIV+GAKVMLLG    A  K
Sbjct:   32 RLLKNSQLAMDKAATEKGKRMSTQVHRMLLKAKAVGDKKLRMEDRFFLEVHYCGNDTDVHHLFFSRLWTVGRALDHILKTRRRHMRLKAGEEARPLELARVGASSGLPTGGILNNLPPEQLQSFDAVMVRPRTLPPA--GSSASDTSAQGGSSDSAVAAPGLNVEGAPDDLKGSG--IGGDEEPNKQQQRQTGHVLSTCAVGAKASGCEEAGEGSGXXXXXXXXXXXXXXXXASEXXXXXXGMTITVGHGKSVYELGGVMPDRMSVLDLKRRLEPITGVPFLRQKLLFKGILRDGDKIGATKIVEGAKVMLLGTVAAAAKK 348          
BLAST of mRNA_H-paniculata_contig9355.17130.1 vs. uniprot
Match: A0A4D9CUT0_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUT0_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 7.180e-12
Identity = 77/239 (32.22%), Postives = 105/239 (43.93%), Query Frame = 3
Query:   75 CRQHDFLPLRCSACGLVFCTNHSAITDHDCQHGEAYLSSREHHQTRSATNSHYHPLAWSKPSEVMAAVTSRFDGREGELNAEVAHYNIAKVSESQA----KAGSPDKLLKNAQIAVDKAMTA-KGKRVSTQVHRMLLKSKAVGDKKLRMEDRFFLEVHYSG---------------------------NEDDVHHLFFSRLWTVGRTLDDIIKTRRRYLRLKAGEEEQPLELAPAGSPH 695
            C ++DFLP RC+ C L+ CT+H A   H+C  G    +S++  Q      +    LA     E M  V  RFDG       E A     +V  SQA       + +K LK  +       T  KG +   +V +MLLKSKA G   L  +DRF+LEV   G                           + + V +LFFSRLW++GR LD+ I+  RR LR     +  P   +PA   H
Sbjct:   12 CGRNDFLPHRCTLCSLLHCTDHMAPFAHECA-GREDNTSKDRPQAFGLGRA----LA-----EEMDRVRRRFDGAS-----EWATKEHFRVQGSQAGLVASFRAENKYLKAYREQAKAGKTRHKGHKTREKVRQMLLKSKAQGRSSLHADDRFYLEVRIGGLDVEEKGTASPSSLPPSAPASTPSVASSAEVVDYLFFSRLWSLGRVLDETIEKHRRALR-----QIYPSHYSPASPSH 230          
BLAST of mRNA_H-paniculata_contig9355.17130.1 vs. uniprot
Match: UPI00148AD783 (AN1-type zinc finger protein 1 isoform X2 n=2 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148AD783)

HSP 1 Score: 69.3 bits (168), Expect = 2.760e-9
Identity = 59/200 (29.50%), Postives = 87/200 (43.50%), Query Frame = 3
Query:   36 MGEFG--GKACFYPGCRQHDFLPLRCSACGLVFCTNHSAITDHDCQHGEAYLSSREHHQTRSATNSHYHPLAWSKPSEVMAAVTSRFDGREGELNAEVAHYNIAKVSESQAKAGSPDKLL-----KNAQIAVDKAMTAKGKRVSTQVHRMLLKSKAVGDKKLRMEDRFFLEVHYSG---NEDDVHHLFFSRLWTVGRTLD 605
            M EF   G+ C   GC+Q DFLP  C+ C  VFC  H    DH C   ++     E+  TR+ + S        K  E+M  V  +        +     +N  K+ E      + + +      K   I   K    K  + + +V  M +K  AVGD K+   DR +L+V   G   ++     LFFS+ W+VGRT+D
Sbjct:    1 MAEFPNLGEHCSLDGCKQIDFLPFTCTKCQKVFCLEHKFPDDHSCTEFKSDTPHVEYTGTRAYSCS----FTECKARELMPVVCEKCSKNFCLGHRHQKDHNCEKLVEKITPTKTAEHVQQILASKKLNINPKKPRGKKSSKTAAKVALMKMKLHAVGDAKIPDFDRVYLQVVLPGGSVSKGPTKQLFFSKTWSVGRTID 196          
BLAST of mRNA_H-paniculata_contig9355.17130.1 vs. uniprot
Match: A0A7S3UX29_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX29_HETAK)

HSP 1 Score: 63.9 bits (154), Expect = 1.900e-7
Identity = 77/286 (26.92%), Postives = 128/286 (44.76%), Query Frame = 3
Query:  462 MLLKSKAVGDKKLRMEDRFFLEVHYSGNEDD-VHHLFFSRLWTVGRTLDDII----KTRRRYLRLKAGE---EEQPLELAPAGSPHGFPLGVILQDLAPELTSFDVIT----------VRPRSSHAVTTATTRAETTKTGESDTLPEMSKGVNKAPLVDPVTSSNAE--VQSSIQGRGMDNEMGGSVAEVTPRAEKEEDCMQKAVASSDVSSGEMFIMIGHGKAIYELGGIQPQTCTVLDLKRRVELLTGVPFNCQKLLFKGILKDNDSIASTKIVDGAKVMLLGQ 1259
            M +KSK+ G   +  +++FF+ V     + +   H++F RLWTVGR +D +I    +  RR +  KA E   E     ++     HG  L      +     +FD++            + ++S+A     TR       + D   +   G  +  L       N E  + SS  G  +  +M      + P +   E       ++   SS   ++ +G  K +Y +  +     TVLDLK ++E LTG+P   QKLL+KGIL+D+  I  T +  GAKV+L+ +
Sbjct:    1 MKIKSKSAGPAGVLNDNKFFVLVQLKTPDINWERHMYFPRLWTVGRAIDYVISFLSEEYRRAILGKALELYCERINSIVSKDTIIHGSKLEEFDTVILSFAGAFDLLLDGSCLDGEPDEKKQTSYAEHEGATRQS-----KMDKSIKADNGGEQTILASRDAKLNDEKCLISSSSGGPLSLQMNADSL-IPPSSPAHE-------SNPGTSSFTFYVKVG--KEMYSVADLDENANTVLDLKVKLEQLTGIPVQQQKLLYKGILQDSQVICGTAVKAGAKVILMSK 271          
BLAST of mRNA_H-paniculata_contig9355.17130.1 vs. uniprot
Match: A0A433PIH2_9FUNG (Ubiquitin-related domain-containing protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PIH2_9FUNG)

HSP 1 Score: 63.2 bits (152), Expect = 2.280e-7
Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 3
Query: 1056 IGHGKAIYELGGIQPQTCTVLDLKRRVELLTGVPFNCQKLLFKGILKDNDSIASTKIVDGAKVMLLG 1256
            + HGK  YE   I P++ T+L+LK+ +E  T +P   QKL++KG+LKD  +I S+KI DG KVML+G
Sbjct:   20 VTHGKTPYEFE-ISPES-TILELKQELEQRTQIPAAMQKLMYKGMLKDETTIESSKIKDGVKVMLIG 84          
BLAST of mRNA_H-paniculata_contig9355.17130.1 vs. uniprot
Match: A0A8H7PMB8_MORIS (Uncharacterized protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PMB8_MORIS)

HSP 1 Score: 62.4 bits (150), Expect = 8.950e-7
Identity = 29/76 (38.16%), Postives = 51/76 (67.11%), Query Frame = 3
Query: 1029 VSSGEMFIMIGHGKAIYELGGIQPQTCTVLDLKRRVELLTGVPFNCQKLLFKGILKDNDSIASTKIVDGAKVMLLG 1256
            +++  + + I    A+YEL     Q+ T+LDLK+ ++ LTGVP   QKL+FKG++K+  +++  K+  G+K+ML+G
Sbjct:    1 MTADNLSLQISFKGALYELNDRDSQS-TILDLKQHLQDLTGVPVERQKLMFKGLMKNEQTLSEAKVSQGSKIMLIG 75          
BLAST of mRNA_H-paniculata_contig9355.17130.1 vs. uniprot
Match: UPI00083BD08A (ubiquitin domain-containing protein UBFD1-like isoform X1 n=3 Tax=Nicrophorus vespilloides TaxID=110193 RepID=UPI00083BD08A)

HSP 1 Score: 62.0 bits (149), Expect = 9.740e-7
Identity = 32/87 (36.78%), Postives = 52/87 (59.77%), Query Frame = 3
Query:  996 DCMQKAVASSDVSSGEMFIMIGHGKAIYELGGIQPQTCTVLDLKRRVELLTGVPFNCQKLLFKGILKDNDSIASTKIVDGAKVMLLG 1256
            DC  KA   S+V      + + + K  Y +    P   T+ D K++++ L GVP + QKL++KG+L+DN ++ S+ I  GAK+ML+G
Sbjct:   54 DCENKAETPSEVIE----VKVVYNKNKYNVNA--PSNTTIADFKKQLQGLVGVPVSMQKLMYKGLLQDNQTLISSGITKGAKIMLVG 134          
BLAST of mRNA_H-paniculata_contig9355.17130.1 vs. uniprot
Match: A0A4P9W4T1_9FUNG (Ubiquitin-like domain-containing protein (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9W4T1_9FUNG)

HSP 1 Score: 59.7 bits (143), Expect = 2.280e-6
Identity = 29/64 (45.31%), Postives = 41/64 (64.06%), Query Frame = 3
Query: 1062 HGKAIYELGGIQPQTCTVLDLKRRVELLTGVPFNCQKLLFKGILKDNDSIASTKIVDGAKVMLL 1253
            HGK  +++    P +  V DLK  VE+ TGV  N QKLL+KG+L+D  ++A   + DG KVML+
Sbjct:    9 HGKTAHDIS--LPLSTCVADLKAHVEVKTGVHANMQKLLYKGVLRDEQTLAEANVKDGVKVMLM 70          
BLAST of mRNA_H-paniculata_contig9355.17130.1 vs. uniprot
Match: A0A7J7A3N9_9COLE (Ubiquitin-like domain-containing protein n=1 Tax=Lamprigera yunnana TaxID=370605 RepID=A0A7J7A3N9_9COLE)

HSP 1 Score: 59.7 bits (143), Expect = 5.310e-6
Identity = 30/80 (37.50%), Postives = 52/80 (65.00%), Query Frame = 3
Query: 1017 ASSDVSSGEMFIMIGHGKAIYELGGIQPQTCTVLDLKRRVELLTGVPFNCQKLLFKGILKDNDSIASTKIVDGAKVMLLG 1256
            A+S++    + + +   K  Y++    P + +V D K++++ L GVP + QKL++KG+L+DN S+AS  I  GAK+ML+G
Sbjct:   50 ATSEIKEELIEVKVVFNKNKYDVS--TPASSSVADFKKQLQGLLGVPDSMQKLMYKGLLQDNQSLASLGITKGAKIMLVG 127          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9355.17130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5K1V2_9PHAE1.760e-12653.65Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
D8LBN6_ECTSI1.430e-8050.16Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
A0A4D9CUT0_9STRA7.180e-1232.22Ubiquitin-like domain-containing protein n=1 Tax=N... [more]
UPI00148AD7832.760e-929.50AN1-type zinc finger protein 1 isoform X2 n=2 Tax=... [more]
A0A7S3UX29_HETAK1.900e-726.92Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A433PIH2_9FUNG2.280e-749.25Ubiquitin-related domain-containing protein n=1 Ta... [more]
A0A8H7PMB8_MORIS8.950e-738.16Uncharacterized protein n=1 Tax=Mortierella isabel... [more]
UPI00083BD08A9.740e-736.78ubiquitin domain-containing protein UBFD1-like iso... [more]
A0A4P9W4T1_9FUNG2.280e-645.31Ubiquitin-like domain-containing protein (Fragment... [more]
A0A7J7A3N9_9COLE5.310e-637.50Ubiquitin-like domain-containing protein n=1 Tax=L... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9355contigH-paniculata_contig9355:725..8344 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score69.3
Seed ortholog evalue4.8e-09
Seed eggNOG ortholog5482.XP_002550463.1
KEGG koko:K07059
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019538,GO:0019941,GO:0030163,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0044877,GO:0046685,GO:0050896,GO:0051603,GO:0051716,GO:0070628,GO:0070887,GO:0071243,GO:0071704,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.AN1-like Zinc finger
EggNOG OGs39R5H@33154,3NZEC@4751,3QM20@4890,3RVAZ@4891,47C89@766764,KOG3183@1,KOG3183@2759
Ec32 ortholog descriptionAN1-type zinc finger and ubiquitin-like protein
Ec32 orthologEc-27_003310.1
COG Functional cat.S
Best tax levelDebaryomycetaceae
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons6
Model size2109
Cds size1251
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9355.17130.1prot_H-paniculata_contig9355.17130.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9355 1548..8309 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931163.6850476-UTR-H-paniculata_contig9355:724..15471622931163.6850476-UTR-H-paniculata_contig9355:724..1547Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9355 725..1547 -
1691481619.0391757-UTR-H-paniculata_contig9355:724..15471691481619.0391757-UTR-H-paniculata_contig9355:724..1547Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9355 725..1547 -
1622931163.8247864-UTR-H-paniculata_contig9355:8309..83441622931163.8247864-UTR-H-paniculata_contig9355:8309..8344Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9355 8310..8344 -
1691481619.1273708-UTR-H-paniculata_contig9355:8309..83441691481619.1273708-UTR-H-paniculata_contig9355:8309..8344Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9355 8310..8344 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931163.7083907-CDS-H-paniculata_contig9355:1547..17781622931163.7083907-CDS-H-paniculata_contig9355:1547..1778Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9355 1548..1778 -
1691481619.0540988-CDS-H-paniculata_contig9355:1547..17781691481619.0540988-CDS-H-paniculata_contig9355:1547..1778Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9355 1548..1778 -
1622931163.72348-CDS-H-paniculata_contig9355:2901..32481622931163.72348-CDS-H-paniculata_contig9355:2901..3248Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9355 2902..3248 -
1691481619.0764782-CDS-H-paniculata_contig9355:2901..32481691481619.0764782-CDS-H-paniculata_contig9355:2901..3248Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9355 2902..3248 -
1622931163.7374346-CDS-H-paniculata_contig9355:3895..40651622931163.7374346-CDS-H-paniculata_contig9355:3895..4065Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9355 3896..4065 -
1691481619.0866325-CDS-H-paniculata_contig9355:3895..40651691481619.0866325-CDS-H-paniculata_contig9355:3895..4065Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9355 3896..4065 -
1622931163.761836-CDS-H-paniculata_contig9355:4938..50941622931163.761836-CDS-H-paniculata_contig9355:4938..5094Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9355 4939..5094 -
1691481619.0953815-CDS-H-paniculata_contig9355:4938..50941691481619.0953815-CDS-H-paniculata_contig9355:4938..5094Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9355 4939..5094 -
1622931163.7785673-CDS-H-paniculata_contig9355:7261..74521622931163.7785673-CDS-H-paniculata_contig9355:7261..7452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9355 7262..7452 -
1691481619.1050801-CDS-H-paniculata_contig9355:7261..74521691481619.1050801-CDS-H-paniculata_contig9355:7261..7452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9355 7262..7452 -
1622931163.804291-CDS-H-paniculata_contig9355:8153..83091622931163.804291-CDS-H-paniculata_contig9355:8153..8309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9355 8154..8309 -
1691481619.1140578-CDS-H-paniculata_contig9355:8153..83091691481619.1140578-CDS-H-paniculata_contig9355:8153..8309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9355 8154..8309 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9355.17130.1

>prot_H-paniculata_contig9355.17130.1 ID=prot_H-paniculata_contig9355.17130.1|Name=mRNA_H-paniculata_contig9355.17130.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=417bp
MGEFGGKACFYPGCRQHDFLPLRCSACGLVFCTNHSAITDHDCQHGEAYL
SSREHHQTRSATNSHYHPLAWSKPSEVMAAVTSRFDGREGELNAEVAHYN
IAKVSESQAKAGSPDKLLKNAQIAVDKAMTAKGKRVSTQVHRMLLKSKAV
GDKKLRMEDRFFLEVHYSGNEDDVHHLFFSRLWTVGRTLDDIIKTRRRYL
RLKAGEEEQPLELAPAGSPHGFPLGVILQDLAPELTSFDVITVRPRSSHA
VTTATTRAETTKTGESDTLPEMSKGVNKAPLVDPVTSSNAEVQSSIQGRG
MDNEMGGSVAEVTPRAEKEEDCMQKAVASSDVSSGEMFIMIGHGKAIYEL
GGIQPQTCTVLDLKRRVELLTGVPFNCQKLLFKGILKDNDSIASTKIVDG
AKVMLLGQAPGAGGKK*
back to top

mRNA from alignment at H-paniculata_contig9355:725..8344-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9355.17130.1 ID=mRNA_H-paniculata_contig9355.17130.1|Name=mRNA_H-paniculata_contig9355.17130.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7620bp|location=Sequence derived from alignment at H-paniculata_contig9355:725..8344- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTCGACAGAGCAGTTATGTCGTCGGTTGGTTGTAATGGGCGAATTCGGT GGGAAAGCATGCTTCTATCCTGGGTGCCGACAGCACGATTTTCTTCCTCT TAGATGCTCGGCATGTGGCCTTGTTTTTTGCACGAACCATTCAGCTATCA CCGATCATGATTGTCAACATGGTGAAGCCTACTTGAGCTCGGTGAGTATA ATGCTGTCTGTACAACACAGATATATATATATATCATGTCCATATAGTGT CCAACAGGGAGATACTCGTGGCTAGCTATAGGCTCGGCCACCTGATATAT TGATAGCGGCACTTGAGCATGTGGTATGTCGTCGCAATCTATCGTTTTCA GCAACTTCTAGACGTCACGCAGTTTTTGCTGCACCATTCGCCCTGACTTA CTCTCGTCTATAGTATTCCTTTATTATTACACGCAATGTCGTAGCACTGT ATATATTGATGTGGGTATTGTGTGGTTTGACCCCAATAGCCCAGCCCGTG CTAGCGCAACGAATAGTCTCAAGTGGTCGGTCTTCTTGTTTCTAGAGCAA TTGACATCACTTCAACAGACTCGGCTTGTCAGCTTGTCATTATCTGCAGC CCGAAAAATGCTGCCATTTTTCCGAGGTCCAGGTTACTCTACACAGACAA CAAAATTCTGAAGAGATATCGGTTTCGAGTCACCGTGTCGCTGACGCTCA AACTGAGGTACCTTACTGAGATGTATGTGTACATGCCTTTGATGATGTCG GGTTCCTACTCCACACCTTCGGGGTTGGTTTCATTGCGCATCAAAGCGCC GAGGTGACGGCACCAGTGTGGAACAAGTCGGGTGTGTGGAGCAGCAGCAG CAGCAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGGAGCA TCACCAAACGAGATCCGCAACGAACTCGCACTACCACCCTCTGGCGTGGA GTAAACCGTCGGAAGTCATGGCAGCCGTCACGTCGAGGTTCGACGGTCGG GAGGGTGAGCTGAATGCTGAAGTCGCCCATTACAACATCGCCAAGGTGTC AGAATCGCAGGCTAAAGCGGGGTCGCCGGACAAGTAAGAAATGCGTTGGG GTTTTGTTGAGAATTGACCGTAAATCATCGGTTAGTTCTTGAGCACAGTC CCCCTCCCCCTTCGTTTTAACAAGCGGTGTAAGCATGGATGTATGCATAG ATGTGTGAGCTACAACAACAAACGTGGGTCTTCACACCACTGCTTTCCCT GTGACCATTTTTTTAGCTTGCCCCATAGCACACATCAAGGCAAAACTGAG AATTGCAGCCGCGGAATTTGCTTGGACCTTTTGGAGTTGTGACCAAGATG GGACAGAAAAGTGCACCTGTCATGTTCTCACCATGTGCCAGCTTCACCCC ATGTTGAACATGGGGTATAGATTGCAATGTGGTTGCTGGATAAGTAGATG TTGGGTTAACTCGAGCCCCCCCTCGGAGATGCCGAAGGAGGCAGAAAAAC TAAGCGTTTTGGTTCCACATCGCGTCAAGTCGTATGAAAAGAGTGGCCTC TAGTATCTTTGTAAGTCTTCAGCATGCTATCTGAGCGCAACTAATACTGG TGTGTACAAGCATCAAATATTTACTGTCAAGTCAGCGTTTCAATACAAGC GTAGCAAGTAAAGTGGGAGTAATCTTACAGCTGTTGTTCCAGCCACCCGG GATCGCATTTAATTCGCATGCCGACGGCAGGTATTTTCGGCAACGTTTTA TCGCAACATGTTCTACCTTGTCCTGCGGTGGAAATCACTGGATGTTCAGC AAACCTGGCACATATCCAAAACATTTAGGAGACACTATAAGTAAATGTGT ACGAATCCTGCGACATAATTTTATATAAACATACTGTACAGCACGCAGCT GATGCTGGCAGTTGATCAGATCTCCAAATATATCAATCGGCGTGACGATG ACTATTTAGCAGACACCAATCAGCAACAATCCGTCTTCGAGACCGCCGTC GAGATCATTCATAAAGCCATCGGCTTTTCTCAGAATCGCTGTGATCATCA GCGCTTCTCATTGGGAGAGCTCATAGCGTGGCGTGGTTGGGTATTTAGCA ATCACTGGAAGTTGGATACTGCTGGAGGCTCGCTCCAGCGAGCGAGCCGG AAATGGTAAACATTGGAAAATAACTGGATAATTGGGATTCTCACAAGTCA GTGTCCAGCTATACCGGTTCACAAGCCTAACTTCGCCCCTTTCCATTGAT GAACCTGGCAAGGAGAAACGCATCACCACACGGTATCGAAGCAGTGCGAG TAATGGGGCAGAAGGGAAAGTGACCGAACCCTCATCAGCACAGAGTAACT CCGCGTAGCACGACTAAAAATCAGTTTTTGAGTGACTTCGAGCCATGATG CATTTAGCATGGTGCCATCCATTAGTGCGGAAAGGCTGGTGCTGGGGCAT CGACTGTTTCTGTGGTGGACCGAGGCTGGAGTTGACCAACGACTTTGTAC CCTTTGGTGCCTGCATGGATATCCATGGATGTATGGAACAGTTCCTCGGC TTGTGGCCGAAGCCCGGGTTTTCAATGTGGCTTGAATTTCTCACCTGAAA ACATGCCTGCCTCAATATTTCGGGAGGGCCGATCATGTACAGCGGCGGGG ACGAAATATAGCAGCTAACTGGACCCTCTTCGTGCTTTTTAAAGAGGCTG TTTCGGAAGAAAAAATTGTTTTTATTGGTGAGAAGTAAATGCTGAGCGCT GCAGTCATCGTTGTGAGGTAGAACCATGCCAAAGGCCTGTCCACGCTGTA TGCAGTGTCTATTCTCGACTGTCTGTCTGAACAGCGGCGGCTCCTTATCC CTGTTATCATGTCATATGGGTGTCGTCTTTCCCTGTTCTTAGGAGGTGGC GATTATTAGAGAGGGGTTAAATCAAAGTAGCGCCAAAAGAAGCTAAACTG AATGCTAAATAGTAGTTGAAGGTCAACTTCCCAGAGCGGTAGTGCCAAGC GGTGCTAAGAAGAAGAGGCAAGAGGCGGGTTGGGGTCTTTCATGCTGGCC GCTCTAGTCTTGTGTGCCATTCGGCCGTGAATGTGATCGTTGCGCTCAGC CATGCCGAGGAGGGAGATACGATTGCGTTTACACTGACAGTGTACGTATA ATATGATATTCATGGAATTGCTTGCAAGAAAGGTATTTGCAAAATAGAGA ATGGACACGCTAAAACGTGAAATGCAGTACTTGCATCTGTGGCACCTCAG GCTGCTGAAGAATGCTCAAATAGCCGTTGACAAAGCGATGACGGCAAAGG GAAAGCGGGTTTCGACGCAAGTCCACCGGATGTTACTCAAGTCCAAAGCG GTGGGGGACAAGAAATTGCGAATGGAGGACCGTTTCTTCCTTGAGGTGCA CTACAGGTGACGAAGCCACAACACGACTCAGGGAAGAGATCAATCGTAGC CAGTGTTTACGGGTCACGATAGCAGCAGAATTGCCAATTTCCGGGTACTG CTGTTGTTCCTGGACTCGTACCGAGAGTCAACTCACGTGTATCATCATCG TCTGTCACAGGAGATGAAGCAATTTATTCCCGCTCTTGGCTGCGTCTACT AATTCATGTGAACGGTTTAATGTCACCGTGCTCTTGCGTAATAGACTGCA CGCAGTTGACGGCGTCTTTTTTTTTGTTGGGAAGCTGTGAGAGCCAAGCC TAACTAGGATCCTAGAGACGAGCGCGCACCGTGCTTATTTTACTGCGCGC TTGACCATAGCGAGAGAAACGGATTGTGATGGAACAATACGTCAAGTGTA GCATCGCCAAAAACAGCGACTGGTGTCTTACCTGCCCCTATTGGCCATCT TTCGTCTTTGTTTCCGCGTGTTATGGCAATTGCGGTTATCCGTTTCGAAA CATTTTTACACGTTGGTATATTTTATGTTCTTTTGATGCGTGTGCGACAT GAGCATTCCCAGAGCGCACCGACCTTTTGGTGGAGAGACAGATACCCTAT ATAATCGTAGCCGTGGGGAAACAGCAGTAGTTCTTAGTAAAATGGAAGAT GGTGGGCGCCCGGCTGTTGCGCGCCTTCTTCCTTTGTAGTCGCGGTAGTT TGTATTTTCTCGATCAGGGAAGCTGCGCCTGGTGGCAGCATCGGCAACCT CGCTCAGCTGAACCCGTAAAATAAACATGCATGCCTTATTTGTCTGGTAG ATTGGCCCACGATGTCACTTTTTCGTCTTTCCACTGGCGCGATTTTTTGT TGTTTTTTATCATATTTTGCCAAGTACAGTGGAAACGAAGACGACGTACA TCACTTGTTTTTCTCGCGACTATGGACGGTAGGGCGAACGTTGGATGACA TCATCAAGACTAGGCGACGATATCTCAGGCTAAAGGCGGGAGAGGAGGAG CAACCGCTCGAGCTTGCCCCTGCAGGTTCGCCTCACGGTTTCCCGTTGGG TGAGAGACCGGCTAGGTTAAATTTCTCTGTACAGAGAGCCATGTCTTTTG TGCGTAACCGACTGCTTTGGGTCGACCAACTGAGTTGAAAGCAGAATTTC GAGACCGCTTCCAACATGATCCAAAAGTTGTTTTCGCCTTTGAAGGGAGT GGTGGCTTTTTTGTGTTTCCCACTGCTTTGCTTCGACCAAATCTCGACAA CGGTCCAACATGACCCGAGAATTGTTTGCGTCAACGCGCTGCGTGCTTGG CTGGGGCGGGCCGGGAAAAATGGGGACAACTCACTGTCAACGGTGGTAAC TGCCTACTTTTGGTCCCTGCTCTCTCATGTTTGCAGGGCATTGCTCGCCT ATGGTATATTCACTGCGTATGTCTCGGATAAGTCTAGCACTTTATCGCGC TTACATGTGTCGCGCCAAGTACCCATCCTGTCTTATGTGCATGACGCTAC AAGAGTAGTCCGCATCACCATCTTGTCCAAGATGCCCCCCCTCCTCTATT GATCTAATCTTGCTGATAAGTGTACACAGCTCAAATTTGAGGTCAGCTGC ATTACCTCAACATGGGTACAACTGAGTTAATATATGAGCGTTAGAGCTTA CTTCTACTACCCCTCCCGCGGTCCGGTGCCGTGTGTCATCTCGCAGGGGT AATTTTGCAAGATTTAGCGCCAGAATTAACGTCGTTTGACGTCATCACAG TGCGCCCGCGATCAAGTCATGCCGTGACCACCGCTACCACTCGAGCAGAA ACCACCAAGACAGGAGAGAGCGACACCTTGCCAGAGATGTCTAAAGGGGT AAACAAAGCACCTCTCGTAGATCCCGTTACCTCATCGAACGCTGAGGTGC AGAGTTCGATCCAGGGTCGAGGAATGGATAACGAGATGGGAGGCAGTGTG GCGGAGGTGACGCCACGAGCAGAGAAGGAAGAAGATTGTATGCAGAAAGC TGTTGCTTCGTCGGATGTCTCTTCGGGGGAAATGTTCATCATGGTAAGAC ATGTAGCTGCGACGACATGTGCTGTAAAGGTCGAAACACGACGGGCGTAA TCTCGATAAGTCTTTCTACGCCTGCTTGAATCCTCCCCGTTTCGCCGATA CGCTTCGGATTCGTACGAAATAAGCATGACTTTGACCTGAGGGATAGTAT TGCCCACGAATAGTATCTCCACCGTAGACCTGATCTCAAAATGCCGATAT TCTTTGCCGTGGCTGTCTCGAGGCGCGATGCAACTCGAACGAGGGTCAAG GCGCAGTTTCGCTGTTTTGTTGTGTATTAACGATTGTTACTAACATCGGC GCTTCCGTGTTAGTTTCGCGCGATAATCGATTTTGTTTGTTCTGGAGGGA GGCGTGCTTATGTTTTGCGTGCTGTAGTTGTTGAACGATTGACCACGCAT CCTCGAGATTCGTTGGGTGGGCAGTTTCAGCACAACCCAGGCTCGTCAAG GTCACATTAGGTAGTGCTTGAGGCGGGAGCCCTGTATCATGGATTTATTG GACGTGAGTTAGATAAGAAACGAGACAATTAGAAGCGAATTTACGTGCGG GGGTGGGGGTTCAAACACTCCCCACAACCACAATACAGCGTCCAGGCTCA ACAGCAGTTACCCCAACTTCGTGTATAAATCCACACGGGATTCAAGGTCT TTTGGCAGAAAACAGTGCGGCAACACCATTTTCGACCATCTGCTCTAGAG AGACCATTTCCAATTGGTGAGGTTCCTGCGCCATTTTACGATAAATATTT CAATCCAACAGAAGGTTACTACGAGTCGTTTAGACGAAAGCTCAAGAGTA TTCGCCTGATGGTTTAGCATGAGCGCGTTTGTTCTGTATGTGCCACGGAC CATCTACGACTGCTCCGAACGATGGGTGAAACGAATGAATAGAGTTCAAC ACTTGAATATATATTCCTACACATGACGAGACTGAGGAGAATACGATTTT TTTCTTGTCGTGAATATTTCAAGGTATTCGCGTTTGTCCGGGGGAGTGAA AGATTTAAAGATTTCGTCTGTGGGTGAAGCGTAGCACTTTGTTTTACACG TCTCCTTCGTGTTTGTTGTTTTGTTCTCTTCCCATCCGTTGCACACCGCC TTACCTTGTGTCGTAGATAGGGCATGGAAAAGCTATCTACGAGCTTGGCG GAATACAGCCCCAAACTTGCACCGTGCTGGATCTGAAGAGACGTGTAGAG CTCCTGACTGGTGTGCCTTTTAACTGCCAAAAGTTACTTTTCAAAGGCAT ACTGAAAGACAATGATAGCATAGCCTCAACAAAGATCGTTGACGGCGCAA AGGTCATGCTTCTTGGGCAAGCCCCTGGTGCCGGCGGCAAAAAGTAGGTA CCCAGCCAGCATTTAATAGAGTGCATTCTAGTCTAATATTTAAATAGGCC TCCAGCCAAGGAGGACTTTTGACGCTTGGCGGAGGTGGCGCCAAGCCCCT CCGGCGGGTCGTGGGTGCTGCCGGAGGGATGCATTTGGAGGGGTCAAGCG CTCTCTTCTTCGATTTGCCTTTTTCACGGTACCCTGTGCAACAGATGATC CACCCGATCGACTCACTGACCAGCAGTCTGCAAAACACACCCAAATGATT ACATTTTTTTTGCCGAAAACCTCATCACCTGGAGGTGGTATTTGACGCGG GATAGTATACTCCGTATCCCCGGTGATGGTATCTTGTCTAAATGTCGGTG ATATCACTCGAGGAGTGATAAGTGTGGGAGGTGATGGAATGACAAGTGGT ACGATGACTCACCTCCATGCAGGCAGCAGGGGGTGTTGATAAGTAGGGAG CTGGTAGCATGCCGTGCGGCACGGTGTTCGTTTGTCATCACACACATTAA GACGACAGCAGAGGGAGGATATGGGTGATACGGTGGGTTTTACCTCACCG TCTACGGATGCTCACTGTTTTTTTGTTGATATTGACCGAAAGCTAAAATG CGATAAATTCATATGAGCCATTCCGAAGTGTAATCCAATTTGTTTTACCG ATTTTCAAGTTTCCCTGTTGAAAAATATCAGAACGGGCAAAATATGGACA TTTTCCGGCCAGTTTCGTTTTTCCCTGTGCTCGCCCCCGACGGACGCTAA TTTCCGCAATGTTTTTGGGGGTCAGCCTCAAAACCTTATCGAGTTCTGAT AAGAAAAAAGTAGATTGCTT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig9355:725..8344-

>mRNA_H-paniculata_contig9355.17130.1 ID=mRNA_H-paniculata_contig9355.17130.1|Name=mRNA_H-paniculata_contig9355.17130.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2502bp|location=Sequence derived from alignment at H-paniculata_contig9355:725..8344- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCGAATTCGGTGGGAAAGCATGCTTCTATCCTGGGTGCCGACAGCA
CGATTTTCTTCCTCTTAGATGCTCGGCATGTGGCCTTGTTTTTTGCACGA
ACCATTCAGCTATCACCGATCATGATTGTCAACATGGTGAAGCCTACTTG
AGCTCGATGGGCGAATTCGGTGGGAAAGCATGCTTCTATCCTGGGTGCCG
ACAGCACGATTTTCTTCCTCTTAGATGCTCGGCATGTGGCCTTGTTTTTT
GCACGAACCATTCAGCTATCACCGATCATGATTGTCAACATGGTGAAGCC
TACTTGAGCTCGCGGGAGCATCACCAAACGAGATCCGCAACGAACTCGCA
CTACCACCCTCTGGCGTGGAGTAAACCGTCGGAAGTCATGGCAGCCGTCA
CGTCGAGGTTCGACGGTCGGGAGGGTGAGCTGAATGCTGAAGTCGCCCAT
TACAACATCGCCAAGGTGTCAGAATCGCAGGCTAAAGCGGGGTCGCCGGA
CAACGGGAGCATCACCAAACGAGATCCGCAACGAACTCGCACTACCACCC
TCTGGCGTGGAGTAAACCGTCGGAAGTCATGGCAGCCGTCACGTCGAGGT
TCGACGGTCGGGAGGGTGAGCTGAATGCTGAAGTCGCCCATTACAACATC
GCCAAGGTGTCAGAATCGCAGGCTAAAGCGGGGTCGCCGGACAAGCTGCT
GAAGAATGCTCAAATAGCCGTTGACAAAGCGATGACGGCAAAGGGAAAGC
GGGTTTCGACGCAAGTCCACCGGATGTTACTCAAGTCCAAAGCGGTGGGG
GACAAGAAATTGCGAATGGAGGACCGTTTCTTCCTTGAGGTGCACTACAG
GCTGCTGAAGAATGCTCAAATAGCCGTTGACAAAGCGATGACGGCAAAGG
GAAAGCGGGTTTCGACGCAAGTCCACCGGATGTTACTCAAGTCCAAAGCG
GTGGGGGACAAGAAATTGCGAATGGAGGACCGTTTCTTCCTTGAGGTGCA
CTACAGTGGAAACGAAGACGACGTACATCACTTGTTTTTCTCGCGACTAT
GGACGGTAGGGCGAACGTTGGATGACATCATCAAGACTAGGCGACGATAT
CTCAGGCTAAAGGCGGGAGAGGAGGAGCAACCGCTCGAGCTTGCCCCTGC
AGGTTCGCCTCACGGTTTCCCGTTGGTGGAAACGAAGACGACGTACATCA
CTTGTTTTTCTCGCGACTATGGACGGTAGGGCGAACGTTGGATGACATCA
TCAAGACTAGGCGACGATATCTCAGGCTAAAGGCGGGAGAGGAGGAGCAA
CCGCTCGAGCTTGCCCCTGCAGGTTCGCCTCACGGTTTCCCGTTGGGGGT
AATTTTGCAAGATTTAGCGCCAGAATTAACGTCGTTTGACGTCATCACAG
TGCGCCCGCGATCAAGTCATGCCGTGACCACCGCTACCACTCGAGCAGAA
ACCACCAAGACAGGAGAGAGCGACACCTTGCCAGAGATGTCTAAAGGGGT
AAACAAAGCACCTCTCGTAGATCCCGTTACCTCATCGAACGCTGAGGTGC
AGAGTTCGATCCAGGGTCGAGGAATGGATAACGAGATGGGAGGCAGTGTG
GCGGAGGTGACGCCACGAGCAGAGAAGGAAGAAGATTGTATGCAGAAAGC
TGTTGCTTCGTCGGATGTCTCTTCGGGGGAAATGTTCATCATGGGGTAAT
TTTGCAAGATTTAGCGCCAGAATTAACGTCGTTTGACGTCATCACAGTGC
GCCCGCGATCAAGTCATGCCGTGACCACCGCTACCACTCGAGCAGAAACC
ACCAAGACAGGAGAGAGCGACACCTTGCCAGAGATGTCTAAAGGGGTAAA
CAAAGCACCTCTCGTAGATCCCGTTACCTCATCGAACGCTGAGGTGCAGA
GTTCGATCCAGGGTCGAGGAATGGATAACGAGATGGGAGGCAGTGTGGCG
GAGGTGACGCCACGAGCAGAGAAGGAAGAAGATTGTATGCAGAAAGCTGT
TGCTTCGTCGGATGTCTCTTCGGGGGAAATGTTCATCATGATAGGGCATG
GAAAAGCTATCTACGAGCTTGGCGGAATACAGCCCCAAACTTGCACCGTG
CTGGATCTGAAGAGACGTGTAGAGCTCCTGACTGGTGTGCCTTTTAACTG
CCAAAAGTTACTTTTCAAAGGCATACTGAAAGACAATGATAGCATAGCCT
CAACAAAGATCGTTGACGGCGCAAAGGTCATGCTTCTTGGGCAAGCCCCT
GGTGCCGGCGGCAAAAAGTAGATAGGGCATGGAAAAGCTATCTACGAGCT
TGGCGGAATACAGCCCCAAACTTGCACCGTGCTGGATCTGAAGAGACGTG
TAGAGCTCCTGACTGGTGTGCCTTTTAACTGCCAAAAGTTACTTTTCAAA
GGCATACTGAAAGACAATGATAGCATAGCCTCAACAAAGATCGTTGACGG
CGCAAAGGTCATGCTTCTTGGGCAAGCCCCTGGTGCCGGCGGCAAAAAGT
AG
back to top