mRNA_H-paniculata_contig9353.17127.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9353.17127.1
Unique NamemRNA_H-paniculata_contig9353.17127.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9353.17127.1 vs. uniprot
Match: A0A6H5KWQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ8_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 4.860e-36
Identity = 93/200 (46.50%), Postives = 116/200 (58.00%), Query Frame = 1 
Query:  568 SMTRCGPTFTVAANATRRLRLGIRPGLLTDPLPVGVVEDGRAVPFDGFVALA-----CADNDVR--------EASMYDEQ--ESAETKIDEVRVPTVPDRVNFSDTMTWARCSVASQILPVLQQPQAS-HSPRLVKLVRTVGTYCRPRFDVVGPAAIDLGNVGHTASRRGRRRFNVTLRNLSDMPVPVGVAGMSPELEVI 1119
            S+TRCGP  ++ A AT  +RL IR G LT PLP   VE+G+AV FDG VA A     CA + V          A +Y++Q  E       + R   +P+RV          CS +         P     +P LVKL+R VGT+CRPRF+VVG   +DLGNVGHT SRRGRRRF V LR+L D  VPVG+ G+SPELEV+
Sbjct: 1626 SLTRCGPAVSLPARATAVVRLCIRTGELTAPLPTAAVENGKAVGFDGIVAFARIGGDCASSVVAANGTSAAARAGLYEQQFGERRAAVPGDTRALLLPERVY---------CSGSGATTGEEDNPSPEVRAPPLVKLLRAVGTFCRPRFEVVGTPNVDLGNVGHTKSRRGRRRFEVRLRSLCDTAVPVGMVGISPELEVV 1816
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BLAST of mRNA_H-paniculata_contig9353.17127.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 2.510e-34
Identity = 90/200 (45.00%), Postives = 112/200 (56.00%), Query Frame = 1 
Query:  568 SMTRCGPTFTVAANATRRLRLGIRPGLLTDPLPVGVVEDGRAVPFDGFVALA-----CADN--------DVREASMYDEQESAETKI--DEVRVPTVPDRVNFSDTMTWARCSVASQILPVLQQPQAS-HSPRLVKLVRTVGTYCRPRFDVVGPAAIDLGNVGHTASRRGRRRFNVTLRNLSDMPVPVGVAGMSPELEVI 1119
            S+TRCGP  ++ A AT  +RL IR G LT PLP   VE G+AV FDG VA A     CA +            A +Y++Q          + R   +P+RV          C   +        P     +P LVKL+R VGT+CRPRF+VVG   +DLGNVGHT SRRGRRRF V LR+L D  VPVG+ G+SPELEV+
Sbjct: 3358 SLTRCGPAVSLPARATAVVRLCIRTGELTAPLPTAAVESGKAVDFDGIVAFARIGGACASSVAVGNATAAAARAGLYEQQFGGRRAAVPGDTRALFLPERVYC--------CGSGATTDGEEDDPSPEVRAPPLVKLLRAVGTFCRPRFEVVGTPNVDLGNVGHTKSRRGRRRFEVRLRSLCDTAVPVGMVGISPELEVV 3549
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9353.17127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWQ8_9PHAE4.860e-3646.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHH6_ECTSI2.510e-3445.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9353contigH-paniculata_contig9353:3456..4636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.0
Seed ortholog evalue3.8e-32
Seed eggNOG ortholog2880.D8LHH6
Hectar predicted targeting categoryother localisation
EggNOG OGs28MMI@1,2QU5A@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size1181
Cds size1179
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931163.2849534-CDS-H-paniculata_contig9353:3455..46341622931163.2849534-CDS-H-paniculata_contig9353:3455..4634Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9353 3456..4634 +
1691481618.942897-CDS-H-paniculata_contig9353:3455..46341691481618.942897-CDS-H-paniculata_contig9353:3455..4634Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9353 3456..4634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9353.17127.1prot_H-paniculata_contig9353.17127.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9353 3456..4634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9353.17127.1

>prot_H-paniculata_contig9353.17127.1 ID=prot_H-paniculata_contig9353.17127.1|Name=mRNA_H-paniculata_contig9353.17127.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=393bp
DSEGPQGKGAGLRGNGDEEEEDDDDDDRELEDSDRPWSGGEPFELSPVNV
LRRLSVTDEMAQGDQEAGDEFEDDPAAATTSDLEFRVTNRLNRPVVLASY
SNLPLRIAPVARRRKIDADRDFAGFSVSFSDEDSGPNWGHGGSRHRRNKS
PGVCRTKETSYVDGWEQEQGTPVTTPTEWKQQHLRDSELSMTRCGPTFTV
AANATRRLRLGIRPGLLTDPLPVGVVEDGRAVPFDGFVALACADNDVREA
SMYDEQESAETKIDEVRVPTVPDRVNFSDTMTWARCSVASQILPVLQQPQ
ASHSPRLVKLVRTVGTYCRPRFDVVGPAAIDLGNVGHTASRRGRRRFNVT
LRNLSDMPVPVGVAGMSPELEVIDGSIATGEITESQRSATLSS
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mRNA from alignment at H-paniculata_contig9353:3456..4636+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9353.17127.1 ID=mRNA_H-paniculata_contig9353.17127.1|Name=mRNA_H-paniculata_contig9353.17127.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1181bp|location=Sequence derived from alignment at H-paniculata_contig9353:3456..4636+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACAGCGAGGGTCCGCAGGGAAAAGGGGCGGGGCTTCGGGGAAACGGAGA
CGAAGAAGAGGAGGACGACGACGACGATGACCGCGAGCTGGAAGACAGTG
ATCGACCGTGGTCCGGTGGAGAACCATTCGAGCTTTCCCCTGTTAACGTA
CTGCGTCGCCTGAGCGTTACGGACGAGATGGCTCAAGGCGACCAAGAAGC
TGGGGACGAGTTTGAGGATGACCCTGCTGCTGCCACCACCAGCGATCTGG
AGTTTCGAGTGACCAACCGCCTGAATCGGCCTGTTGTTCTGGCTTCTTAC
TCGAATCTTCCCCTGCGCATCGCACCGGTAGCGCGTCGACGCAAGATCGA
TGCTGACCGCGACTTCGCTGGCTTCAGTGTTTCGTTTTCGGATGAGGATA
GTGGCCCAAACTGGGGACACGGTGGCAGTAGACATCGGCGGAATAAGTCG
CCTGGTGTCTGCAGGACGAAAGAGACTTCTTATGTCGATGGGTGGGAGCA
AGAGCAAGGAACGCCCGTGACAACGCCGACCGAATGGAAACAACAACACT
TGCGGGATTCGGAGCTTTCGATGACGAGGTGCGGCCCGACCTTCACCGTC
GCGGCCAACGCCACGAGGAGATTAAGACTTGGCATTCGGCCAGGTTTACT
AACGGATCCGCTGCCGGTAGGAGTGGTGGAGGACGGGCGGGCGGTGCCGT
TCGATGGTTTTGTTGCATTGGCATGCGCGGATAACGATGTACGAGAAGCG
TCGATGTATGATGAGCAGGAGAGCGCAGAAACAAAAATTGATGAGGTGCG
AGTGCCAACAGTGCCAGACCGGGTGAACTTCTCTGACACGATGACCTGGG
CTCGCTGTTCAGTAGCTTCTCAAATTCTGCCGGTGCTTCAACAACCACAA
GCTTCTCACTCACCACGGCTGGTGAAGCTTGTCCGAACCGTCGGCACCTA
CTGCCGGCCGAGATTTGACGTCGTGGGACCAGCCGCCATCGACCTGGGCA
ACGTTGGCCACACGGCGTCCAGGCGCGGCCGCCGCCGGTTTAACGTAACG
CTGCGGAACCTGTCCGATATGCCCGTTCCGGTGGGCGTGGCCGGTATGTC
TCCGGAGCTTGAAGTCATCGATGGCAGCATTGCCACTGGTGAAATAACTG
AATCCCAGAGGTCGGCAACGCTCAGCAGCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig9353:3456..4636+

>mRNA_H-paniculata_contig9353.17127.1 ID=mRNA_H-paniculata_contig9353.17127.1|Name=mRNA_H-paniculata_contig9353.17127.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2358bp|location=Sequence derived from alignment at H-paniculata_contig9353:3456..4636+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACAGCGAGGGTCCGCAGGGAAAAGGGGCGGGGCTTCGGGGAAACGGAGA
CGAAGAAGAGGAGGACGACGACGACGATGACCGCGAGCTGGAAGACAGTG
ATCGACCGTGGTCCGGTGGAGAACCATTCGAGCTTTCCCCTGTTAACGTA
CTGCGTCGCCTGAGCGTTACGGACGAGATGGCTCAAGGCGACCAAGAAGC
TGGGGACGAGTTTGAGGATGACCCTGCTGCTGCCACCACCAGCGATCTGG
AGTTTCGAGTGACCAACCGCCTGAATCGGCCTGTTGTTCTGGCTTCTTAC
TCGAATCTTCCCCTGCGCATCGCACCGGTAGCGCGTCGACGCAAGATCGA
TGCTGACCGCGACTTCGCTGGCTTCAGTGTTTCGTTTTCGGATGAGGATA
GTGGCCCAAACTGGGGACACGGTGGCAGTAGACATCGGCGGAATAAGTCG
CCTGGTGTCTGCAGGACGAAAGAGACTTCTTATGTCGATGGGTGGGAGCA
AGAGCAAGGAACGCCCGTGACAACGCCGACCGAATGGAAACAACAACACT
TGCGGGATTCGGAGCTTTCGATGACGAGGTGCGGCCCGACCTTCACCGTC
GCGGCCAACGCCACGAGGAGATTAAGACTTGGCATTCGGCCAGGTTTACT
AACGGATCCGCTGCCGGTAGGAGTGGTGGAGGACGGGCGGGCGGTGCCGT
TCGATGGTTTTGTTGCATTGGCATGCGCGGATAACGATGTACGAGAAGCG
TCGATGTATGATGAGCAGGAGAGCGCAGAAACAAAAATTGATGAGGTGCG
AGTGCCAACAGTGCCAGACCGGGTGAACTTCTCTGACACGATGACCTGGG
CTCGCTGTTCAGTAGCTTCTCAAATTCTGCCGGTGCTTCAACAACCACAA
GCTTCTCACTCACCACGGCTGGTGAAGCTTGTCCGAACCGTCGGCACCTA
CTGCCGGCCGAGATTTGACGTCGTGGGACCAGCCGCCATCGACCTGGGCA
ACGTTGGCCACACGGCGTCCAGGCGCGGCCGCCGCCGGTTTAACGTAACG
CTGCGGAACCTGTCCGATATGCCCGTTCCGGTGGGCGTGGCCGGTATGTC
TCCGGAGCTTGAAGTCATCGATGGCAGCATTGCCACTGGTGAAATAACTG
AATCCCAGAGGTCGGCAACGCTCAGCAGCGACAGCGAGGGTCCGCAGGGA
AAAGGGGCGGGGCTTCGGGGAAACGGAGACGAAGAAGAGGAGGACGACGA
CGACGATGACCGCGAGCTGGAAGACAGTGATCGACCGTGGTCCGGTGGAG
AACCATTCGAGCTTTCCCCTGTTAACGTACTGCGTCGCCTGAGCGTTACG
GACGAGATGGCTCAAGGCGACCAAGAAGCTGGGGACGAGTTTGAGGATGA
CCCTGCTGCTGCCACCACCAGCGATCTGGAGTTTCGAGTGACCAACCGCC
TGAATCGGCCTGTTGTTCTGGCTTCTTACTCGAATCTTCCCCTGCGCATC
GCACCGGTAGCGCGTCGACGCAAGATCGATGCTGACCGCGACTTCGCTGG
CTTCAGTGTTTCGTTTTCGGATGAGGATAGTGGCCCAAACTGGGGACACG
GTGGCAGTAGACATCGGCGGAATAAGTCGCCTGGTGTCTGCAGGACGAAA
GAGACTTCTTATGTCGATGGGTGGGAGCAAGAGCAAGGAACGCCCGTGAC
AACGCCGACCGAATGGAAACAACAACACTTGCGGGATTCGGAGCTTTCGA
TGACGAGGTGCGGCCCGACCTTCACCGTCGCGGCCAACGCCACGAGGAGA
TTAAGACTTGGCATTCGGCCAGGTTTACTAACGGATCCGCTGCCGGTAGG
AGTGGTGGAGGACGGGCGGGCGGTGCCGTTCGATGGTTTTGTTGCATTGG
CATGCGCGGATAACGATGTACGAGAAGCGTCGATGTATGATGAGCAGGAG
AGCGCAGAAACAAAAATTGATGAGGTGCGAGTGCCAACAGTGCCAGACCG
GGTGAACTTCTCTGACACGATGACCTGGGCTCGCTGTTCAGTAGCTTCTC
AAATTCTGCCGGTGCTTCAACAACCACAAGCTTCTCACTCACCACGGCTG
GTGAAGCTTGTCCGAACCGTCGGCACCTACTGCCGGCCGAGATTTGACGT
CGTGGGACCAGCCGCCATCGACCTGGGCAACGTTGGCCACACGGCGTCCA
GGCGCGGCCGCCGCCGGTTTAACGTAACGCTGCGGAACCTGTCCGATATG
CCCGTTCCGGTGGGCGTGGCCGGTATGTCTCCGGAGCTTGAAGTCATCGA
TGGCAGCATTGCCACTGGTGAAATAACTGAATCCCAGAGGTCGGCAACGC
TCAGCAGC
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