mRNA_H-paniculata_contig9351.17125.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9351.17125.1
Unique NamemRNA_H-paniculata_contig9351.17125.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9351.17125.1 vs. uniprot
Match: A0A6G0VZ61_APHCR (BED-type domain-containing protein (Fragment) n=1 Tax=Aphis craccivora TaxID=307492 RepID=A0A6G0VZ61_APHCR)

HSP 1 Score: 57.0 bits (136), Expect = 4.140e-7
Identity = 34/124 (27.42%), Postives = 57/124 (45.97%), Query Frame = -2 
Query:   27 VVEKKEFKDMVGVLNKQAKMPQRR--------------------GVVRRIEHPSLITDVWMSCANDSYQLLTMAYINDESKLVTLVLNCSKKEGSQTEEDMADAIQTFVKDHGLSGHVMTSNTD 338
            +VE KEFK ++ +LN    +P R+                     +     + SL TD W S  N++Y  +T+ +I+   +L + VL C+K     T E++ + +Q  +K+ GL   V    TD
Sbjct:  127 IVEDKEFKKLINMLNPGYSLPSRKTLSVSLLPILYNKIYNEVKLDIEVNAHYVSLTTDAWTSLKNENYMAVTVHFIDMSCQLKSYVLQCTKFPERHTSENIKNCLQNTIKNRGLKNKVAACTTD 250
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9351.17125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6G0VZ61_APHCR4.140e-727.42BED-type domain-containing protein (Fragment) n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9351contigH-paniculata_contig9351:5510..5851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931163.2323892-CDS-H-paniculata_contig9351:5509..58511622931163.2323892-CDS-H-paniculata_contig9351:5509..5851Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9351 5510..5851 +
1691481618.9285588-CDS-H-paniculata_contig9351:5509..58511691481618.9285588-CDS-H-paniculata_contig9351:5509..5851Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9351 5510..5851 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9351.17125.1prot_H-paniculata_contig9351.17125.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9351 5510..5851 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9351.17125.1

>prot_H-paniculata_contig9351.17125.1 ID=prot_H-paniculata_contig9351.17125.1|Name=mRNA_H-paniculata_contig9351.17125.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
PSFTIDSSQSVLLVITCPERPWSFTNVWIASAMSSSVCEPSFFEQLRTRV
TSFDSSLMYAMVSNWYESLAHDIHTSVIREGCSIRLTTPRRCGIFACLLS
TPTMSLNSFFSTTF
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mRNA from alignment at H-paniculata_contig9351:5510..5851+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9351.17125.1 ID=mRNA_H-paniculata_contig9351.17125.1|Name=mRNA_H-paniculata_contig9351.17125.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=342bp|location=Sequence derived from alignment at H-paniculata_contig9351:5510..5851+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCAGTTTCACCATCGACAGTTCGCAGTCCGTGTTGCTCGTCATCACATG
CCCCGAGAGGCCATGGTCCTTCACAAACGTCTGGATCGCATCTGCCATGT
CTTCTTCCGTTTGCGAGCCTTCCTTCTTCGAGCAGTTGAGGACGAGGGTG
ACCAGCTTCGACTCGTCGTTGATGTACGCCATGGTCAGCAACTGGTACGA
GTCGTTGGCGCACGACATCCATACATCCGTAATTAGGGAAGGGTGCTCTA
TTCGCCTGACGACGCCGCGTCGTTGCGGCATCTTCGCCTGTTTGTTGAGC
ACGCCCACCATGTCCTTGAACTCCTTTTTCTCCACCACCTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig9351:5510..5851+

>mRNA_H-paniculata_contig9351.17125.1 ID=mRNA_H-paniculata_contig9351.17125.1|Name=mRNA_H-paniculata_contig9351.17125.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig9351:5510..5851+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCAGTTTCACCATCGACAGTTCGCAGTCCGTGTTGCTCGTCATCACATG
CCCCGAGAGGCCATGGTCCTTCACAAACGTCTGGATCGCATCTGCCATGT
CTTCTTCCGTTTGCGAGCCTTCCTTCTTCGAGCAGTTGAGGACGAGGGTG
ACCAGCTTCGACTCGTCGTTGATGTACGCCATGGTCAGCAACTGGTACGA
GTCGTTGGCGCACGACATCCATACATCCGTAATTAGGGAAGGGTGCTCTA
TTCGCCTGACGACGCCGCGTCGTTGCGGCATCTTCGCCTGTTTGTTGAGC
ACGCCCACCATGTCCTTGAACTCCTTTTTCTCCACCACCTTCCCCAGTTT
CACCATCGACAGTTCGCAGTCCGTGTTGCTCGTCATCACATGCCCCGAGA
GGCCATGGTCCTTCACAAACGTCTGGATCGCATCTGCCATGTCTTCTTCC
GTTTGCGAGCCTTCCTTCTTCGAGCAGTTGAGGACGAGGGTGACCAGCTT
CGACTCGTCGTTGATGTACGCCATGGTCAGCAACTGGTACGAGTCGTTGG
CGCACGACATCCATACATCCGTAATTAGGGAAGGGTGCTCTATTCGCCTG
ACGACGCCGCGTCGTTGCGGCATCTTCGCCTGTTTGTTGAGCACGCCCAC
CATGTCCTTGAACTCCTTTTTCTCCACCACCTTC
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