mRNA_H-paniculata_contig12720.1712.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12720.1712.1
Unique NamemRNA_H-paniculata_contig12720.1712.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12720.1712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12720contigH-paniculata_contig12720:5039..5405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size367
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928994.9039848-CDS-H-paniculata_contig12720:5038..54041622928994.9039848-CDS-H-paniculata_contig12720:5038..5404Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12720 5039..5404 +
1691480694.9092798-CDS-H-paniculata_contig12720:5038..54041691480694.9092798-CDS-H-paniculata_contig12720:5038..5404Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12720 5039..5404 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12720.1712.1prot_H-paniculata_contig12720.1712.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12720 5039..5404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12720.1712.1

>prot_H-paniculata_contig12720.1712.1 ID=prot_H-paniculata_contig12720.1712.1|Name=mRNA_H-paniculata_contig12720.1712.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
KSNERLILHSPWPGLTVDTIHHDTCLRALADHKTPHLSSIMGYVLETKYD
HCRKRTHTPHASSMAWTESSNHYISYVVPDPISGATVPQVFPSLLQIVLP
AHPTVCSRSHQVPPAHPAALAR
back to top

mRNA from alignment at H-paniculata_contig12720:5039..5405+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12720.1712.1 ID=mRNA_H-paniculata_contig12720.1712.1|Name=mRNA_H-paniculata_contig12720.1712.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=367bp|location=Sequence derived from alignment at H-paniculata_contig12720:5039..5405+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGTCGAACGAACGGTTGATTCTACACTCCCCTTGGCCAGGACTAACAGT
TGATACCATACACCACGACACATGTCTGCGGGCACTCGCGGACCACAAAA
CACCACATTTGTCATCAATCATGGGGTACGTCCTCGAAACGAAATACGAC
CATTGCAGGAAACGCACCCACACACCTCACGCCTCGTCGATGGCATGGAC
CGAGTCCAGCAATCATTACATCAGCTATGTGGTACCCGATCCCATATCCG
GCGCTACAGTACCCCAAGTCTTTCCTTCTCTACTGCAAATAGTCCTCCCC
GCTCACCCGACAGTTTGTTCCCGCTCACATCAAGTACCTCCAGCGCACCC
AGCTGCCCTAGCTCGGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig12720:5039..5405+

>mRNA_H-paniculata_contig12720.1712.1 ID=mRNA_H-paniculata_contig12720.1712.1|Name=mRNA_H-paniculata_contig12720.1712.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig12720:5039..5405+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGTCGAACGAACGGTTGATTCTACACTCCCCTTGGCCAGGACTAACAGT
TGATACCATACACCACGACACATGTCTGCGGGCACTCGCGGACCACAAAA
CACCACATTTGTCATCAATCATGGGGTACGTCCTCGAAACGAAATACGAC
CATTGCAGGAAACGCACCCACACACCTCACGCCTCGTCGATGGCATGGAC
CGAGTCCAGCAATCATTACATCAGCTATGTGGTACCCGATCCCATATCCG
GCGCTACAGTACCCCAAGTCTTTCCTTCTCTACTGCAAATAGTCCTCCCC
GCTCACCCGACAGTTTGTTCCCGCTCACATCAAGTACCTCCAGCGCACCC
AGCTGCCCTAGCTCGGAAGTCGAACGAACGGTTGATTCTACACTCCCCTT
GGCCAGGACTAACAGTTGATACCATACACCACGACACATGTCTGCGGGCA
CTCGCGGACCACAAAACACCACATTTGTCATCAATCATGGGGTACGTCCT
CGAAACGAAATACGACCATTGCAGGAAACGCACCCACACACCTCACGCCT
CGTCGATGGCATGGACCGAGTCCAGCAATCATTACATCAGCTATGTGGTA
CCCGATCCCATATCCGGCGCTACAGTACCCCAAGTCTTTCCTTCTCTACT
GCAAATAGTCCTCCCCGCTCACCCGACAGTTTGTTCCCGCTCACATCAAG
TACCTCCAGCGCACCCAGCTGCCCTAGCTCGG
back to top