mRNA_H-paniculata_contig9347.17119.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9347.17119.1
Unique NamemRNA_H-paniculata_contig9347.17119.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9347.17119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9347contigH-paniculata_contig9347:3318..9222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue2.8e-07
Seed eggNOG ortholog2880.D8LJ34
Hectar predicted targeting categoryother localisation
EggNOG OGs28NV4@1,2QVF4@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_006020.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size466
Cds size465
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9347.17119.1prot_H-paniculata_contig9347.17119.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9347 3318..9222 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931162.3229945-CDS-H-paniculata_contig9347:3317..34291622931162.3229945-CDS-H-paniculata_contig9347:3317..3429Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9347 3318..3429 +
1691481618.5210156-CDS-H-paniculata_contig9347:3317..34291691481618.5210156-CDS-H-paniculata_contig9347:3317..3429Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9347 3318..3429 +
1622931162.3476765-CDS-H-paniculata_contig9347:4895..50061622931162.3476765-CDS-H-paniculata_contig9347:4895..5006Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9347 4896..5006 +
1691481618.5332568-CDS-H-paniculata_contig9347:4895..50061691481618.5332568-CDS-H-paniculata_contig9347:4895..5006Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9347 4896..5006 +
1622931162.3649726-CDS-H-paniculata_contig9347:8980..92221622931162.3649726-CDS-H-paniculata_contig9347:8980..9222Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9347 8981..9222 +
1691481618.5437326-CDS-H-paniculata_contig9347:8980..92221691481618.5437326-CDS-H-paniculata_contig9347:8980..9222Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9347 8981..9222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9347.17119.1

>prot_H-paniculata_contig9347.17119.1 ID=prot_H-paniculata_contig9347.17119.1|Name=mRNA_H-paniculata_contig9347.17119.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=155bp
AATLESVFGGVDASACINDQTDGRRDGGADGQSAQLRAMASQSGGDFLGR
DGSAGMIRGYSLGLGAMFDQGFAPAPSVMTDSCIGGGTTNSGSGNWAGTP
GSKGPLSRSVSVAPFLPPRRGLTPAEKHAYFIMLPATNDPAPGASHAAGD
TPGKA
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mRNA from alignment at H-paniculata_contig9347:3318..9222+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9347.17119.1 ID=mRNA_H-paniculata_contig9347.17119.1|Name=mRNA_H-paniculata_contig9347.17119.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5905bp|location=Sequence derived from alignment at H-paniculata_contig9347:3318..9222+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGCTACGTTGGAAAGTGTTTTCGGTGGGGTGGACGCGAGCGCATGTAT
AAATGATCAAACCGACGGTAGGAGGGACGGTGGTGCTGACGGACAGTCAG
CACAACTTCGAGGTGATGGATGATGATGATGATGATGATGATGATGATGA
TGATGATGATGATGATGACATAAGAAAAATATTTTTTTATTCAATTTTTT
AGTAGAGATTTTTTTTCACCCCGCGGACAAATACAAACGGAGTATTCGCT
ACTATCTCAAACTACCATTACTTGTCTAGGGTAAAACACGTGTTTTCATT
CGTTTACAAGTCTGTGAATGGTCACTCTACAGATGGTGAGCAGGTGGTCG
TATACCCCGGCGAATAGTCACAAATGCGGGTCCTGTTTATTTTCCGGATG
GTACTGTACTGATTGAATACTCTATCTGCCCGAGCTTTTCGATGCCCCAT
GGTATATCCAGTACAATGCATATTATTCGCGTCATATTCCCCCAACCTGA
ACATTTTTCTCATATTTATTCGGGTCTTGTATTCGTATTTGTCCGGGAGG
TGAGATGTTTTTCAAAGTGAATACGAGTCAAGATAACAAACAATAATCGT
GTACAACAAACACACAAAGTAAGAGAGGAGAGCACGTTCCTGAAGCATGC
TCTGCCTGCAAGGTTTTTTGTTACGTGACCAGCACGTTGTAATAGACACG
TGAACGAATGTGTGCACACTCAAGATTCAAGACGACAAGTACCGTTACAC
GGTGGATATGCATTGTAGGGGTGGCGGGGTAAGCGGGTGAATGACGGGGG
GGGGGGTACTTATGTGTGTATGGTAAGTAAACGTGCAACTTTTTTCACAG
GATTTTTTTTTCAATCCCTAAAATAGTCTCCATATTTCACCCATCGCGAT
AATCCCTCCCACTTGCCAAAGTTAGCAGGACTTAGCTATAATGCTCTATG
ACAACTCGATCATCGCATCCATGTTAAAGTAACCTAGGTCACCTCAAATT
CCAGTTGTGTCCATTTTGTCAAAATCATTGGATAATGACCAATAGGGGGT
GTGTACTCATGTATTGCATGCCGTAGTTGTTAGAACATCCATGACGCCTC
CTCGGAAGGACTGATGCATGCGAGGGGGTAGAGATCTTTTATTTGGTTTG
ACTATAATCGTGACATTTGTTGTGATTATTTCCTTCTTTTTTTTTCTTGA
TTTTTTTCTCATGACTATATTTAAGAAATGATAAATGGATGAGGACAAGA
TCCAGGTCTAATATCAAGAAGGAGTCATCACTATCGCTGCCTTGAAACGT
GTACCTGTTTCGGGGTACCAAACTCCATCCTTTTTTATTGCTCCTTTTGT
TACGATATACTATCGCAGCTCGACCGAATTGCCACTTAAATTGCGCCCAC
GGGTCTGAGAGATCGGCCTAATATGTAACAACAGTAAGTGGAAAAATATA
TATATTTGAAAGACTTTTTGTTCCCGGCAGTTTAGAAGCAATGCGTGACC
CACTGTCCTTCAACCAACCGTATACGCATGCTACGTACGTGTCGAAATCG
ACAAATCGGACACGACACTCGCTGATAGCCATGGCTTCGCAAAGCGGGGG
AGATTTTTTGGGCAGGGATGGAAGCGCAGGCATGATTAGAGGCTACAGCC
TCGGACTGGGAGCCATGTTTGACCAGGGCTTCGCTCCTGGTAAGAGATTT
CTTCCGTATTTTGGCGTTTCTACTTGAGGTTCCGGGGGAAATGGTATTGG
CTGCCGCATGGGTGGCCGTTTGATTGGGGTTTTTTTTCCCGACGTTTCAA
GCACTGTGAGATATCTGTGTGTGTGTGTGTGTGTGTAATGCATGTACATT
TTCCATGCACCACCGAACGGGCAAAATATACGAAGTATGGAAATACTATG
TCGCTGCCTAAGCTTAAAGAGGATGAGTGTGGAGGGTGATTGTGTGTAAA
CATGAGAGGTTTCCCCGCATTGAGGTCAAATTTCACGTTACATTGTGTGC
CCTGCTCAGTAGTTTAGCGTGAGCTCTTGTTTGCATCTCATTTGTCTCGT
GCTATTCATTTTTTTTTTACAGTTGAAGGAGAATAAATATATATATATAC
GAGCTGGTTCATGCATATGGTGCTCTTCACATCATTTCCAGTAACCCAAC
TTGTGAGCTACGTACTAGTGCACAACGTATCGGATCTGCAAAGCTGCAAG
TGTCTGGAAATTCCCCCCCAAAAATGGCGTCACGGCTTCATTTTCATTCT
GGAAGATCCCAAATGTAACTTTACACTTTCGTTGCCAAACTCGGAAGGAC
GTCGGCTCTAATCCAAAAAAAAAAATCTTCGACTTCGCGACCCGTACTGA
AGGCAATGTAATAAGACATTCGACCGCGGTGGCGACTCCTGTTGATAGAT
AGTCATGGATTTTCTCATGCCAATTTTTTCGATTTTTTTGTACGAATTAT
CATACATGTGTACCTTAGTTTGTTCCCTATGTCGACGCGTCGTTGCCGGT
TATAGTGACGATTTCCCTCACCGGTTTTCCGGCGTCCTCTGTCACCATAC
TGTCTAAAAATGCCTTGGGAACCCCCCCCCCAAAAAAAAAATAAAAACAT
CGGTGGAACAATGTGCGATGAGTACAAGCGACAAGCCTTCAACTTGGGAA
TTTTCATCCCGTATGAGAATTTTCGTTCCTTAAGTCACATTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTAACGCTGGCGCGGCCTATTCTGATGTCAGTG
TATAATAACGGATTTGGCCGCAGCCGTGAGCCCTCGTTATGGTTCTCAGA
TTTCTCTTTCGGTTTTCTCAAGTTTTTGGATGAAGCTTCGCGCAGGTGTT
CCTTGCTTGGTGCCCGAGGTCACCCGTTGTGGTCCTCTTTTTCTTTCGGT
TTTTGTGACCGGTTTTCTGGGGTTCTCATGTATTTTTTTCGGCCTAAAGC
TGGTCTCCAAAATTAAAAGAAAAAAAAAATACCAACATGGGGGTGACATC
GGGCACGAAGCAAAGTTTCGTCCAAAAACCCGAGAAAACCGAAAGGGAAA
TGTGAAAGCCAACCATTCTGGATTTGCGTCGTGAACCATCCTGTATTATG
CCGAACAATTATGAAAATTGTAGCAAAAATAACTTTGTAAGTTAGTTATA
GAGGGTCATTTCTACTGAACTAGGAACTTTTGGAGGGGCGCATATTTCAA
ATTTGAGCACTTTGGATCATTTCTTATGATTAAAATATGAAAAAAAAGTT
GTGGCGGATGAATAATATCCCATTTAATTTTATTTTTTTTCAGAATTCAT
TCAAAATCTACGGAATTTTTGTCGGCTCTTGACGTCCGTCCCTCCGAAAT
TTCAATTTTTCGTCACTTTCAAATATTTTCAAGCGCAATGCGCCCCATCA
ACCTTGGACAACAGGTGCCAGCCACAGCGGTTGGGGTCCTTGTGACCTTC
GTACTTGAAGGAGCACTGGACCAACACCAGCAAGTCCGACTTTCCAAAGA
ACTGTTGTGTGCGTGTTTGGGGGTGCTTTAGTTCGGTGCCTGTATCGTCT
GAACAATGCGCGTCTTTAGTGCTGCTAATTTAGAACTGCAGGCGCTTTTT
TGAATCCCTCGCTATCGACAAGAGCCGCTTCTTTTATGGGGGTGCAAGAT
TCAACGCTTGTATCTTTTATGGTACTAATTCAACGATACAGTCTGCGAAG
AGTTTAGCCAATTTTGGACAAATTTGAGGAATTCTCGCGGCAGACGCCAT
TTATCGAGCGCGACGCGACGCGCCCAATATTTTGGAATTCCTGCAAGAAT
GATGGTTGCAGAAATGAAATAATGGCCCTGGTCTGTAATTATGGCGAGAC
TTTGGAACATTTTTTCAATTTATATATACATTTGTGTTCGAAGTTTTGTC
GCAATTTTTGTTCGTGTAATTTTTTCATTTTTTTTTTTTTCCCACTTAGC
CATGTCACAATCTGAACAATCCGCAGTACGGCACATATTTACTTGTACTA
GAGATATTTTTCACGTTCGATTTATGGTACTCCTATTCGACCCGCTTAAG
TGGCTGACTGTGTGCAAAGGCACTCGAGTGTATAAAGAGGTTTCTGTTGA
TGTATCACAAGAGCTGACTGTGCATTACTGTGTATTATTGTAACTGAATA
TGCTGCCTGTGTTAGTACCTATATAGTTGGGTGTGCTGCATCAGTAGTAC
GGTGCTATGTGACTGTATGTGCTGGAGTGGGGGATGCCGCGTGCTTTCCT
ATGGTGCGTGTTGTCGTCATTGACACCGTGCGGTATATTGCGGTTTCTTG
CACTGTACTTTCGTCCTCCACACTATTTTACTGCAATAATAACGGTCATT
ATTTGTGCCTCACCATGAAGATGCGTACATCCCGCCCAGGAATAACCAAC
ATGCAAAATATTGACACATGAACGAGGATACAACAAGCGCTTCAAAATGA
CAACCTTTTGCTCTTCAACAAGATAAGACAAGACAAGCGCGGCGTGTGAC
AAATTTGGATGATGACATCAAGGTCCAAGATCACACTACTTTTTTTTTTT
TTTAACATAGATGACTTTCTTTTTTTTTTAACCCTCGGAAGGCTAAGGCA
AAAAACCTCTATCCGATGCTTCCATACTTCAGTATTTTTTACCGAAGTAT
GTCTACATTTCCTTTAACAGAACAGAGTTATTTATTCCTCTGTGGGGTAG
GCGCCACCCCGGTTCGGCCGAACCAGATAGGCAGTGTGGGGGTTGCACCC
ACTAAAAGACCTCTGACTAGACTTCCAGTCATGCTCAGTTCACGAGCTAC
CCTACCCGTTCGGGCGTAGGTTCGTGGATAGGTGACTTGTACTCCGAATT
GCCTTTTTATTCCCCCGCATCGTGACGAAGATGGATAATGGATATCTTGT
ATAATGGATATCTTGTATAATGGATATCTTGTATAATGGATATCTTGTAT
AATGGATATCTTGTATAATGGATATCTTGTATAATGGATATCTTGTATAA
CGGATATCTTGTATAACGGATATCTTGTATAATGGATATCTTGTATATCC
CCCACACCTTGCATAACTGGAAAACAACCTCTGATGCGATCACATCTTGG
ACTTGTTTTGTCTCTGGCACTCTTTGGATTATAATTGCTTACTCTTTCTC
CCCCCCCCCCGCGTGTGCTTAATTTGGTGCATCTATCAATAAATCGGTGG
AGAATATGAAACATTACTGGTGAGAAGCCTCTTTGTCACTGAATTGCAGT
TCTTTTCTCTCTCTTGTGTTGTTGTGTTATCAATATCGTCTCTTTGCACA
AGCGTGCCTCTTGTGTCACTTGCTGTAAAGGACCTATCCATACCTACTGA
CCGTTGTTGTTGCGGTGTAGTGCACCTGATGACGTGTAGAAGTGAATCCT
GCTCCTACATTTGCCTTCTGCATGAAATACCTAACGCTTGACGCGACAAA
AACGTTCATGTTGTATTTATTAATAATCACGGGTCACAGTAAAAACCCTC
AAAATGTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAA
AATGACTCCAGTATACAGTATATATGAAACGCCCCCCTCTCCTGGCGATT
TGTCTTGTTTGAAACGGTAACAAACCAAAACCACACCGAACCGAACCGAA
CCGAATCAAACAGCCCCCAGCGTGATGACCGACAGCTGCATCGGCGGCGG
AACAACAAACTCAGGTTCAGGGAACTGGGCTGGGACACCGGGGTCCAAGG
GCCCATTGTCACGCTCGGTCAGCGTAGCGCCCTTTCTACCGCCTAGACGA
GGGCTCACACCTGCAGAGAAACATGCCTACTTCATCATGCTCCCGGCTAC
CAACGATCCCGCTCCTGGGGCTTCTCATGCTGCAGGAGACACGCCTGGGA
AGGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig9347:3318..9222+

>mRNA_H-paniculata_contig9347.17119.1 ID=mRNA_H-paniculata_contig9347.17119.1|Name=mRNA_H-paniculata_contig9347.17119.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at H-paniculata_contig9347:3318..9222+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGCTACGTTGGAAAGTGTTTTCGGTGGGGTGGACGCGAGCGCATGTAT
AAATGATCAAACCGACGGTAGGAGGGACGGTGGTGCTGACGGACAGTCAG
CACAACTTCGAGGCGGCTACGTTGGAAAGTGTTTTCGGTGGGGTGGACGC
GAGCGCATGTATAAATGATCAAACCGACGGTAGGAGGGACGGTGGTGCTG
ACGGACAGTCAGCACAACTTCGAGCCATGGCTTCGCAAAGCGGGGGAGAT
TTTTTGGGCAGGGATGGAAGCGCAGGCATGATTAGAGGCTACAGCCTCGG
ACTGGGAGCCATGTTTGACCAGGGCTTCGCTCCTGCCATGGCTTCGCAAA
GCGGGGGAGATTTTTTGGGCAGGGATGGAAGCGCAGGCATGATTAGAGGC
TACAGCCTCGGACTGGGAGCCATGTTTGACCAGGGCTTCGCTCCTGCCCC
CAGCGTGATGACCGACAGCTGCATCGGCGGCGGAACAACAAACTCAGGTT
CAGGGAACTGGGCTGGGACACCGGGGTCCAAGGGCCCATTGTCACGCTCG
GTCAGCGTAGCGCCCTTTCTACCGCCTAGACGAGGGCTCACACCTGCAGA
GAAACATGCCTACTTCATCATGCTCCCGGCTACCAACGATCCCGCTCCTG
GGGCTTCTCATGCTGCAGGAGACACGCCTGGGAAGGCCCCCCCAGCGTGA
TGACCGACAGCTGCATCGGCGGCGGAACAACAAACTCAGGTTCAGGGAAC
TGGGCTGGGACACCGGGGTCCAAGGGCCCATTGTCACGCTCGGTCAGCGT
AGCGCCCTTTCTACCGCCTAGACGAGGGCTCACACCTGCAGAGAAACATG
CCTACTTCATCATGCTCCCGGCTACCAACGATCCCGCTCCTGGGGCTTCT
CATGCTGCAGGAGACACGCCTGGGAAGGCC
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