mRNA_H-paniculata_contig9337.17117.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9337.17117.1
Unique NamemRNA_H-paniculata_contig9337.17117.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9337.17117.1 vs. uniprot
Match: A0A6H5JZ72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ72_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 2.770e-19
Identity = 113/375 (30.13%), Postives = 161/375 (42.93%), Query Frame = 2 
Query:    2 QVMEQVLQGVRGMRQSMSTLQRTRTQVTFGCAMAASLIDTATAVQGVLAAISDGDTIWHRHNLLLPLS------KPPRDIQVRSRAAGTSGGTAVAAGEGWEWVSSASGKSVSP--------REARDRAVERLSRAVEVLILEYDKARKRIVFGLDEQGRTLGEQQG---ENGVGGAAKGGDGEETRDEETD-ISHLGLTFRSPSRSLSNVKSHGGVVEHGY-RDPEEKSIKDEI-------------PTHVMSMEERHRVGGQPEMARGAFFFSLQALCNMLIKTTSMR----RPAKISVAS-YVLPGLWTAVRPPPELWNMIMTARRFAGLNLFRVGEQREPESGEADVTTTPVPVATSAVGAASGKLHAPKR 1015
            ++MEQVLQGVRGM QSM  + RTR QV+F   + +SL D + AV   L A S       R + LLP S      +    I   S     +                                + +   A  RL  AV  ++ +Y +ARK +++GLD+ GR L E      E   GG +     E    E+   +S      R+ S ++S +K+       G     +E  + DEI             P HV+ M+ER ++G    MARGAF FSL  LC+ L K    R    RP++ + A+ +++ GLWTA+RPPP L   + +    AGL   R    R   S         V +A   +GA SG +    R
Sbjct:   37 ELMEQVLQGVRGMLQSMVDMHRTRAQVSFSRVVGSSLRDVSKAVDLTLEATS-------RRSALLPASILACCHRDALGIMTTSSVGNAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRQSSLLEATGRLEEAVSRMMKDYQRARKEVLYGLDDLGRPLEEVASLGREVDRGGRSPSIPREPVSLEDLQSLSKREKLPRTGSINISVLKNGLSTTAGGVPASSKEAQVSDEIAGRRKERDPLGGVPNHVLVMKERQKLGSSATMARGAFLFSLSGLCSALTKKRVSRAGGWRPSQSAEAARFIISGLWTAIRPPPGLLGALSST---AGLLAPRCCRPRGSSSSRGH--RRKVKLALKRLGARSGPVSPTSR 399
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BLAST of mRNA_H-paniculata_contig9337.17117.1 vs. uniprot
Match: D8LD61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD61_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 3.630e-14
Identity = 65/207 (31.40%), Postives = 94/207 (45.41%), Query Frame = 2 
Query:  353 RLSRAVEVLILEYDKARKRIVFGLDEQGRTLGEQQGENGVGGAAKGGDGEETRDEET--DISHLGLTFRSP---SRSLSNVKSHGGVVEHGYRDPEEKSIKDE--------------IPTHVMSMEERHRVGGQPEMARGAFFFSLQALCNMLIK-----TTSMRRPAKISVASYVLPGLWTAVRPPPELWNMIMTARRFAGLNLFR 901
            RL  AV  ++ +Y +ARK +++GLD+ GR L E+   +G    + G      RD  +  D+  L      P   S +LS +K+       G     +++   E              +P HV+ M+ER ++G    MARGAF FSL  LC+ L K     T   R       A +V  GLWTA+RPPP L   + +   F     FR
Sbjct:  466 RLEEAVSRMMKDYQRARKEVLYGLDDLGRPL-EEVASSGREVDSGGRSPSLPRDPVSLEDLQSLSKRINLPRTGSINLSGLKNGLSTTAGGLPARSKEAEVSEGIGGRRREGDPLGGVPNHVLVMKERQKLGSAATMARGAFLFSLSGLCSALTKKRVNRTGGWRPSQSAEAARFVFSGLWTAIRPPPGLLGALSSTPGFLAARCFR 671
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9337.17117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZ72_9PHAE2.770e-1930.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD61_ECTSI3.630e-1431.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9337contigH-paniculata_contig9337:4416..7538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1062
Cds size1053
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9337.17117.1prot_H-paniculata_contig9337.17117.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9337 4423..7538 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931162.1746857-UTR-H-paniculata_contig9337:4415..44221622931162.1746857-UTR-H-paniculata_contig9337:4415..4422Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9337 4416..4422 +
1691481618.4651518-UTR-H-paniculata_contig9337:4415..44221691481618.4651518-UTR-H-paniculata_contig9337:4415..4422Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9337 4416..4422 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931162.1925347-CDS-H-paniculata_contig9337:4422..49341622931162.1925347-CDS-H-paniculata_contig9337:4422..4934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9337 4423..4934 +
1691481618.47682-CDS-H-paniculata_contig9337:4422..49341691481618.47682-CDS-H-paniculata_contig9337:4422..4934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9337 4423..4934 +
1622931162.204501-CDS-H-paniculata_contig9337:5817..60721622931162.204501-CDS-H-paniculata_contig9337:5817..6072Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9337 5818..6072 +
1691481618.4881797-CDS-H-paniculata_contig9337:5817..60721691481618.4881797-CDS-H-paniculata_contig9337:5817..6072Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9337 5818..6072 +
1622931162.2194757-CDS-H-paniculata_contig9337:7252..75381622931162.2194757-CDS-H-paniculata_contig9337:7252..7538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9337 7253..7538 +
1691481618.4996243-CDS-H-paniculata_contig9337:7252..75381691481618.4996243-CDS-H-paniculata_contig9337:7252..7538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9337 7253..7538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9337.17117.1

>prot_H-paniculata_contig9337.17117.1 ID=prot_H-paniculata_contig9337.17117.1|Name=mRNA_H-paniculata_contig9337.17117.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=351bp
MEQVLQGVRGMRQSMSTLQRTRTQVTFGCAMAASLIDTATAVQGVLAAIS
DGDTIWHRHNLLLPLSKPPRDIQVRSRAAGTSGGTAVAAGEGWEWVSSAS
GKSVSPREARDRAVERLSRAVEVLILEYDKARKRIVFGLDEQGRTLGEQQ
GENGVGGAAKGGDGEETRDEETDISHLGLTFRSPSRSLSNVKSHGGVVEH
GYRDPEEKSIKDEIPTHVMSMEERHRVGGQPEMARGAFFFSLQALCNMLI
KTTSMRRPAKISVASYVLPGLWTAVRPPPELWNMIMTARRFAGLNLFRVG
EQREPESGEADVTTTPVPVATSAVGAASGKLHAPKRCARCWGVGTTFWAF
K
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mRNA from alignment at H-paniculata_contig9337:4416..7538+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9337.17117.1 ID=mRNA_H-paniculata_contig9337.17117.1|Name=mRNA_H-paniculata_contig9337.17117.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3123bp|location=Sequence derived from alignment at H-paniculata_contig9337:4416..7538+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGGTGATGGAGCAAGTACTGCAGGGCGTTCGAGGCATGAGACAGAGCA
TGTCCACCTTGCAGCGCACGCGCACGCAGGTCACATTCGGCTGCGCGATG
GCCGCATCCCTCATAGACACCGCCACGGCCGTCCAAGGAGTTCTCGCCGC
AATCTCCGATGGCGACACTATTTGGCACCGCCACAATCTGCTCTTGCCAC
TATCCAAGCCCCCCCGAGATATACAAGTAAGAAGCAGGGCTGCTGGAACG
AGCGGGGGCACTGCTGTGGCGGCGGGTGAGGGATGGGAGTGGGTAAGCTC
GGCGTCTGGGAAGAGTGTGTCACCGCGCGAGGCTCGTGATAGGGCCGTTG
AAAGGCTTAGTAGAGCCGTTGAGGTGTTGATACTGGAGTACGATAAGGCC
AGGAAGAGGATTGTCTTCGGGCTGGATGAACAAGGCCGGACGCTTGGTGA
GCAACAGGGGGAAAATGGGGTCGGCGGTGCTGCTAAAGGTGGTGATGGGG
AGGAGACTCGTGATGAAGAGTGAGTGGAAGCATGTGTTAAACAGCAAATA
GGAGAGGATGCAATTGTTGAACGATTGATACAGCAAACCAAGGGGCCGTA
GGATGCCATCATTACGCGAAGCATAGAATACGTGTATACATAATCAGGTG
TATATCTATATCCACATCTATATATGCGTGCATGTATTGATTTTTATGCG
AGTTTCCACCTGCATGTGGATATCTGCACATTAACCGAAACTAACCGAAA
AGGGTACTGCAAAAAGCATAAAAAGTTCATCTGACACCAGGCAAAAGCGG
AGGAGACACGCGTGAAGGTTAGCATTGAAAGTTGTATGTAGCTGGTATAC
TGTAGACGATAATCTAATGACAATACTGCTATTAATATTGCTGCAACGAG
AGGAAGCAGGGTTTGTCACTGTATGTCGTGCTTCTCGGACAGCGTTTCTT
CTCTGTTTTGACGTGAGTGCGTCTCCAAGCCCGTGTTGCGAATTTGTGGT
CGGTGTGTGGTCGTACGACATCGACCAAGAATCAGGTGCGTAATGGGACT
GTATGAGGACTTATATTCTTTTGCGGTGTACCTGGAGTAGGTAGCACTCG
TCTTCGTCGATCCTTTGAACAAGTATGCGTCTGATCCTGATCGATCTCGG
CATGTACTGGAGTATGATCAGTAATTGCATGTACATTTTTATCGTGCTGT
TGCCTCACACGACAATATTCTACTCTCCAAGTTGGATCCAATATGAAAAC
AAGTACCCTTCGTGTGGGTCCCGCCAGCGTTTCATCCATTTTATTCACAG
ATCACCGTCTTTTTTGTAACCGTGCCTCCATTTTCCCATCGTTCCCATTG
TGCGATGTCAACGGTACATTGTTTTACATAACATCTGACTTGCCCGGCAC
AGAACCGACATTTCTCATCTCGGGCTAACATTCAGGAGCCCGTCAAGGAG
TCTTTCAAACGTGAAAAGTCACGGAGGCGTTGTGGAGCATGGGTACAGGG
ATCCCGAAGAAAAGAGCATCAAGGACGAAATTCCTACGCACGTCATGTCC
ATGGAAGAGAGACACCGGGTTGGCGGACAGCCTGAGATGGCTAGGGGAGC
GTTCTTTTTCAGCCTGCAGGCGTTGTGTAACATGCTTATCAAGACGACCT
CAATGCGGTGCGTCTCGTGGAGAAATGTGCAGAGGAGTGATGTTGTGGTG
CCAGTCTTTCAAGATTTCAGTATCACCCTTTGTATTTGTTTGATTGGTTT
TGCTCTGTTTTGTCCTGGCTTGCCAAGACTTGACACGCACGCTTTGTGAG
ATCATCACTAACATTGTGTGAAATGAAAATAGCTGTTTGATCGATCCCGT
CAAAATCTCGCCGTTGGGAAATGACCCCGCATCATTTGACCGCCTCTCAG
TTTGATCGCACGGCACGCGGCTCGGAAATTTCTCACAGAATGAGAACGGA
AGCTTGTTCTGTCGGGACTTGTTCCCGTGGTGTAGCGGTTTATGCCCGGG
CTTACTTGCAATTTTGGCGTCACGTATGGTATCTGAGGTTCGGACTAAAA
GTTCGAAGAGGGTATGCATATGTAGCTAGCTAGCCATCCGCACGTTGTGT
ATGCTGCATACGTCCGATGGCTTCGTGTGCGAAATGGCATGAGTTGCTCT
CTTAGCCGCGTGTTAATCAACGAAGGGAAAAATAATATACATGGGATTGA
AAATGAAAATTTGACCCTATGTTGCCTCTGTGGTTGGCCAGTGCTCATGC
GACTACCCTGGTCCTGCGCGTACACGGATAGTCGTACGAACACTGGCCAA
CTACAGAGCGTTGAAGCAGATTCGCATGCTTGTTATCATGGTTTCCTCAT
TCGCTTAAAATAACTGTATGTACTACACGGTACATCTTACAGCGGTTGAG
CACAGTGAATCAATCTACTCCGACAACTCATTCTGAGGCACTCCAACAAC
CTTAACGTTGGCGCTCAAACCGCGAGCAACATTCCCCAGCATAGTGTTTG
TTAAGTCTCTCAGCATCTTCCCCGCTTCATTATGCCAAGCTTATTCATAA
GTAAACACACCTCGCTGTGACGTTGGGCTCACATGACGTAAGAATATTCG
TGAATATTAAATTAGTATAAATGAAAAGACAAACCCGAAAAAACCCCAGC
ATACCGGGCTGCAATGTTTGACAACCTTGCTTCTTCCTCCCCCGCTCCCG
ACCCCTGAATATCATTAATCCCCGCTCCTCCCTATATAAGCTCCGTCATC
TTGAGGGTCCAACAACCAAGGCATGTAACGTAGGAATACCCCACCCCCTC
GCTGCTCCCTTCCCCCGCGAAACAACTTACTACGAAGACGGCCGGCCAAA
ATTTCAGTGGCGAGCTACGTTCTTCCCGGCTTGTGGACAGCAGTGCGTCC
TCCTCCGGAACTTTGGAACATGATAATGACTGCGAGACGATTTGCAGGGT
TAAACCTTTTCCGTGTGGGGGAACAGAGGGAACCAGAGAGTGGCGAAGCA
GACGTGACTACAACTCCGGTCCCCGTTGCGACTAGCGCTGTGGGCGCGGC
TTCTGGAAAACTACATGCGCCGAAGCGGTGTGCTAGGTGTTGGGGAGTGG
GCACCACATTCTGGGCGTTCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig9337:4416..7538+

>mRNA_H-paniculata_contig9337.17117.1 ID=mRNA_H-paniculata_contig9337.17117.1|Name=mRNA_H-paniculata_contig9337.17117.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2106bp|location=Sequence derived from alignment at H-paniculata_contig9337:4416..7538+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCAAGTACTGCAGGGCGTTCGAGGCATGAGACAGAGCATGTCCAC
CTTGCAGCGCACGCGCACGCAGGTCACATTCGGCTGCGCGATGGCCGCAT
CCCTCATAGACACCGCCACGGCCGTCCAAGGAGTTCTCGCCGCAATCTCC
GATGGCGACACTATTTGGCACCGCCACAATCTGCTCTTGCCACTATCCAA
GCCCCCCCGAGATATACAAGTAAGAAGCAGGGCTGCTGGAACGAGCGGGG
GCACTGCTGTGGCGGCGGGTGAGGGATGGGAGTGGGTAAGCTCGGCGTCT
GGGAAGAGTGTGTCACCGCGCGAGGCTCGTGATAGGGCCGTTGAAAGGCT
TAGTAGAGCCGTTGAGGTGTTGATACTGGAGTACGATAAGGCCAGGAAGA
GGATTGTCTTCGGGCTGGATGAACAAGGCCGGACGCTTGGTGAGCAACAG
GGGGAAAATGGGGTCGGCGGTGCTGCTAAAGGTGGTGATGGGGAGGAGAC
TCGTGATGAAGAATGGAGCAAGTACTGCAGGGCGTTCGAGGCATGAGACA
GAGCATGTCCACCTTGCAGCGCACGCGCACGCAGGTCACATTCGGCTGCG
CGATGGCCGCATCCCTCATAGACACCGCCACGGCCGTCCAAGGAGTTCTC
GCCGCAATCTCCGATGGCGACACTATTTGGCACCGCCACAATCTGCTCTT
GCCACTATCCAAGCCCCCCCGAGATATACAAGTAAGAAGCAGGGCTGCTG
GAACGAGCGGGGGCACTGCTGTGGCGGCGGGTGAGGGATGGGAGTGGGTA
AGCTCGGCGTCTGGGAAGAGTGTGTCACCGCGCGAGGCTCGTGATAGGGC
CGTTGAAAGGCTTAGTAGAGCCGTTGAGGTGTTGATACTGGAGTACGATA
AGGCCAGGAAGAGGATTGTCTTCGGGCTGGATGAACAAGGCCGGACGCTT
GGTGAGCAACAGGGGGAAAATGGGGTCGGCGGTGCTGCTAAAGGTGGTGA
TGGGGAGGAGACTCGTGATGAAGAAACCGACATTTCTCATCTCGGGCTAA
CATTCAGGAGCCCGTCAAGGAGTCTTTCAAACGTGAAAAGTCACGGAGGC
GTTGTGGAGCATGGGTACAGGGATCCCGAAGAAAAGAGCATCAAGGACGA
AATTCCTACGCACGTCATGTCCATGGAAGAGAGACACCGGGTTGGCGGAC
AGCCTGAGATGGCTAGGGGAGCGTTCTTTTTCAGCCTGCAGGCGTTGTGT
AACATGCTTATCAAGACGACCTCAATGCGAACCGACATTTCTCATCTCGG
GCTAACATTCAGGAGCCCGTCAAGGAGTCTTTCAAACGTGAAAAGTCACG
GAGGCGTTGTGGAGCATGGGTACAGGGATCCCGAAGAAAAGAGCATCAAG
GACGAAATTCCTACGCACGTCATGTCCATGGAAGAGAGACACCGGGTTGG
CGGACAGCCTGAGATGGCTAGGGGAGCGTTCTTTTTCAGCCTGCAGGCGT
TGTGTAACATGCTTATCAAGACGACCTCAATGCGACGGCCGGCCAAAATT
TCAGTGGCGAGCTACGTTCTTCCCGGCTTGTGGACAGCAGTGCGTCCTCC
TCCGGAACTTTGGAACATGATAATGACTGCGAGACGATTTGCAGGGTTAA
ACCTTTTCCGTGTGGGGGAACAGAGGGAACCAGAGAGTGGCGAAGCAGAC
GTGACTACAACTCCGGTCCCCGTTGCGACTAGCGCTGTGGGCGCGGCTTC
TGGAAAACTACATGCGCCGAAGCGGTGTGCTAGGTGTTGGGGAGTGGGCA
CCACATTCTGGGCGTTCAAGACGGCCGGCCAAAATTTCAGTGGCGAGCTA
CGTTCTTCCCGGCTTGTGGACAGCAGTGCGTCCTCCTCCGGAACTTTGGA
ACATGATAATGACTGCGAGACGATTTGCAGGGTTAAACCTTTTCCGTGTG
GGGGAACAGAGGGAACCAGAGAGTGGCGAAGCAGACGTGACTACAACTCC
GGTCCCCGTTGCGACTAGCGCTGTGGGCGCGGCTTCTGGAAAACTACATG
CGCCGAAGCGGTGTGCTAGGTGTTGGGGAGTGGGCACCACATTCTGGGCG
TTCAAG
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