mRNA_H-paniculata_contig9335.17116.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9335.17116.1
Unique NamemRNA_H-paniculata_contig9335.17116.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9335.17116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9335contigH-paniculata_contig9335:8232..9255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size630
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9335.17116.1prot_H-paniculata_contig9335.17116.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9335 8262..9012 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931162.083383-UTR-H-paniculata_contig9335:8231..82611622931162.083383-UTR-H-paniculata_contig9335:8231..8261Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9335 8232..8261 -
1691481618.4242356-UTR-H-paniculata_contig9335:8231..82611691481618.4242356-UTR-H-paniculata_contig9335:8231..8261Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9335 8232..8261 -
1622931162.1243055-UTR-H-paniculata_contig9335:9012..92551622931162.1243055-UTR-H-paniculata_contig9335:9012..9255Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9335 9013..9255 -
1691481618.4542458-UTR-H-paniculata_contig9335:9012..92551691481618.4542458-UTR-H-paniculata_contig9335:9012..9255Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9335 9013..9255 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931162.0981338-CDS-H-paniculata_contig9335:8261..85861622931162.0981338-CDS-H-paniculata_contig9335:8261..8586Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9335 8262..8586 -
1691481618.4338226-CDS-H-paniculata_contig9335:8261..85861691481618.4338226-CDS-H-paniculata_contig9335:8261..8586Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9335 8262..8586 -
1622931162.1097822-CDS-H-paniculata_contig9335:8980..90121622931162.1097822-CDS-H-paniculata_contig9335:8980..9012Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9335 8981..9012 -
1691481618.4441583-CDS-H-paniculata_contig9335:8980..90121691481618.4441583-CDS-H-paniculata_contig9335:8980..9012Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9335 8981..9012 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9335.17116.1

>prot_H-paniculata_contig9335.17116.1 ID=prot_H-paniculata_contig9335.17116.1|Name=mRNA_H-paniculata_contig9335.17116.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
MHTCNVTGELNSGRWNVACFGTACNFAHYSFPGIFALNRSLRFLLFLECF
LLPFFGSVFGVCFVFFCCSALAWRTMGSFVGPLGSLDFDFTGTMKSPHKI
LCRRPFDDFLPWRVPLLE*
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mRNA from alignment at H-paniculata_contig9335:8232..9255-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9335.17116.1 ID=mRNA_H-paniculata_contig9335.17116.1|Name=mRNA_H-paniculata_contig9335.17116.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1024bp|location=Sequence derived from alignment at H-paniculata_contig9335:8232..9255- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAACCCGAAGGCAACCGCGGCGTTTGCGGCGTCCTTGGCAGCGGCAGA
GACGGCCAAAAACGCGGCTGCCGCTTCTGAAAGGGCGTCATCTTCCACCT
CCGGTACTGACACACGATCCACCGCCGGTGCATCTAGTTCACACTTGACC
ACCTCCACCCAAGTGCAGAAGATCATGCCTGTCCGGCCATAGATAGGCAC
TTGCGAATACAAAGGATTCCAATATCGTTGAGGTATCTGCCACATGCATA
CGTGCAACGTTACTGGGGAGTTAAAGTAAGTACCGGCAGAGGAAGACATG
GGCAAACCAGAAATGCATTCAAGTAGAAATATCATTCTCCTAATGTCGAA
TGTTTTATAGTGTCAACGACTTATATTTAAGACTTTCGTAGAACGCGCGC
ATAAACTGCATGACACAGCAGCTGATACACGTCTGGTTTCCACTGGGGAG
CTCGGACTCCTTCTGTGATGCCATCCAATACATATCGTTTCACTACCCCT
ACTGCTCCCATCCCCCTTACTGTCCCTGCTAAAGCCGACACGACTCACCC
TCCGCCATGACTGCCCCTTCTGCCACCGCGGCTGCCATCGCTACCACTCC
TTTCCATGCTGTTTGCCCCCACAAATGCTGGGGTGGTAACGTTTTTTTCC
CCGTAACTGCCGCTGGTAGCTCTGGCCGGTGGAACGTTGCGTGTTTTGGC
ACGGCCTGCAACTTTGCCCACTATAGCTTCCCCGGGATTTTTGCGTTGAA
TAGGTCTCTGAGATTCTTGCTGTTTCTGGAATGTTTTCTGCTCCCGTTTT
TCGGCAGCGTGTTTGGGGTCTGTTTCGTTTTTTTCTGTTGTTCTGCGCTT
GCTTGGCGTACCATGGGGTCTTTCGTAGGGCCGCTTGGGTCCTTGGACTT
CGATTTTACAGGGACAATGAAGTCACCCCACAAAATACTGTGTCGTAGAC
CATTTGATGACTTTCTCCCTTGGAGGGTGCCATTGCTGGAGTAAGTAGGG
TTTGACGTTTGCGCTCGATGGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig9335:8232..9255-

>mRNA_H-paniculata_contig9335.17116.1 ID=mRNA_H-paniculata_contig9335.17116.1|Name=mRNA_H-paniculata_contig9335.17116.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig9335:8232..9255- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATACGTGCAACGTTACTGGGGAGTTAAAATGCATACGTGCAACGTT
ACTGGGGAGTTAAACTCTGGCCGGTGGAACGTTGCGTGTTTTGGCACGGC
CTGCAACTTTGCCCACTATAGCTTCCCCGGGATTTTTGCGTTGAATAGGT
CTCTGAGATTCTTGCTGTTTCTGGAATGTTTTCTGCTCCCGTTTTTCGGC
AGCGTGTTTGGGGTCTGTTTCGTTTTTTTCTGTTGTTCTGCGCTTGCTTG
GCGTACCATGGGGTCTTTCGTAGGGCCGCTTGGGTCCTTGGACTTCGATT
TTACAGGGACAATGAAGTCACCCCACAAAATACTGTGTCGTAGACCATTT
GATGACTTTCTCCCTTGGAGGGTGCCATTGCTGGAGTAACTCTGGCCGGT
GGAACGTTGCGTGTTTTGGCACGGCCTGCAACTTTGCCCACTATAGCTTC
CCCGGGATTTTTGCGTTGAATAGGTCTCTGAGATTCTTGCTGTTTCTGGA
ATGTTTTCTGCTCCCGTTTTTCGGCAGCGTGTTTGGGGTCTGTTTCGTTT
TTTTCTGTTGTTCTGCGCTTGCTTGGCGTACCATGGGGTCTTTCGTAGGG
CCGCTTGGGTCCTTGGACTTCGATTTTACAGGGACAATGAAGTCACCCCA
CAAAATACTGTGTCGTAGACCATTTGATGACTTTCTCCCTTGGAGGGTGC
CATTGCTGGAGTAA
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