mRNA_H-paniculata_contig9335.17115.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9335.17115.1
Unique NamemRNA_H-paniculata_contig9335.17115.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9335.17115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9335contigH-paniculata_contig9335:4207..6045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size244
Cds size240
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9335.17115.1prot_H-paniculata_contig9335.17115.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9335 4207..6043 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931162.001017-CDS-H-paniculata_contig9335:4206..43081622931162.001017-CDS-H-paniculata_contig9335:4206..4308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9335 4207..4308 +
1691481618.393983-CDS-H-paniculata_contig9335:4206..43081691481618.393983-CDS-H-paniculata_contig9335:4206..4308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9335 4207..4308 +
1622931162.0154123-CDS-H-paniculata_contig9335:4955..50691622931162.0154123-CDS-H-paniculata_contig9335:4955..5069Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9335 4956..5069 +
1691481618.4061348-CDS-H-paniculata_contig9335:4955..50691691481618.4061348-CDS-H-paniculata_contig9335:4955..5069Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9335 4956..5069 +
1622931162.036976-CDS-H-paniculata_contig9335:6019..60431622931162.036976-CDS-H-paniculata_contig9335:6019..6043Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9335 6020..6043 +
1691481618.4149883-CDS-H-paniculata_contig9335:6019..60431691481618.4149883-CDS-H-paniculata_contig9335:6019..6043Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9335 6020..6043 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9335.17115.1

>prot_H-paniculata_contig9335.17115.1 ID=prot_H-paniculata_contig9335.17115.1|Name=mRNA_H-paniculata_contig9335.17115.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
EDKEQFEEFRAVEHGQQQHHVNAAKEPAAATYAKKRGNSWWRDGAAKALA
SRRESKMSNATTAATPPIPPLEHKTRTSYG
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mRNA from alignment at H-paniculata_contig9335:4207..6045+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9335.17115.1 ID=mRNA_H-paniculata_contig9335.17115.1|Name=mRNA_H-paniculata_contig9335.17115.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1839bp|location=Sequence derived from alignment at H-paniculata_contig9335:4207..6045+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGATAAAGAGCAGTTTGAAGAGTTTCGGGCGGTTGAGCATGGACAACA
GCAGCATCATGTCAATGCGGCGAAGGAACCTGCTGCTGCTACCTATGCAA
AGGTGGGTGTGGCAACGTCACAGCTTGTTCGTGAGGCGAAGGGCGATAAC
ACGAGCTGAACCAACTTACGGTAGCTATATTCATTGGTGAATGATATTGT
TTCCCCAACCACCTGGACTGGGTGTCGGTGCGTCGCATGTCAAGGTTTAT
TTGATAACGTCCAATTGAAACCAATTCCCCTTGGCATCGTCGCAACGCTC
ACTCCATAGTGACCCCAGTCCCCAACCTATCACCCCCGCCACCCTACAAG
TAGCAGCAGAATATAATGGTTTTGTAGTTTCCGACCGACCCAAACAGGTT
GTAAATATTAGGTGAATACTCGTCGCTGTGAGATATTCAATTGAGAGTTT
ACACAGTCCTCCAGAGCTGCATTTGCGTGGTGTCCCTTTTGAAGTTATTG
GGTTTTTAACCCGACACGTCTTCGACTCTCTAGGGAAGTGGATACACCTT
CCTCTCTTCTCGTGTATTGTTCCATTCTCACTTTCCCCACCATTCTCCCA
CCTACGACATTTTGATCACATAGTGCCTCGAGTAGGCATCCTATCAAATT
ATTCCCGCCAATACACACATAAACATGGTGACGAGGAAGAATCGAGCCCC
TTACTCCATCATGGACTCTCATACTGCTGACGCTCTGCTTGTCACGTAGA
AACGGGGGAACAGCTGGTGGCGAGATGGCGCGGCAAAGGCGCTGGCATCG
AGACGCGAGAGTAAGATGAGCAATGCAACCACAGCAGCGACGCCGCCAAT
CCCACCCCTCGAGGTAGGCTGAGCGTCCATAGTGTTGGGCCGGTTTTACT
CACCACGAAGCTATTATTCCATCGATCGCCGCACGTGGGTGGTGATGGAG
AGGATCAACCGGGGAAACATGCTTGGGGGTGATTTTTAACGTCTAGCTGC
CCAAGTCGGAAACATGAACTGCATATTTCCAGGAAGCTACCATAACGCCC
TTTTATATCGCTCGCCCCATTGACATCGCATCGGTCGCCCGACACGAACG
AGTGTGTTATGTTTCGTGCCCCTCCCCCCCACTCTGGATATCGCAAGATT
ACAAAGGGGGATGCGACTGAAAAAATGATTGCGGGTCTTCATGGATAATT
GTTCAGGGTTGGGAATCTGACCTACGCGCGTCCTTCTGAGAATTGTTTCT
GGATATATCGGCAATAAATACAGTGAATGGAGAACATGTACCTTTTCATT
GCACAATTCTTATAGACCTCTTCTTGTTTGTAGAAAATGCACAAATATTG
TTTGTAGGCATCGCTTATCCGTCCAAACCACATTCATGACCATCGCCCCC
GTTCCCGACTGCCGGCAGCGAGCACGACTTCTCCGCGCTAGCACTCGCTG
TTCCATCGCCCGCCTCCCCCTGCCTCTTCGATATCGCACCCCCCTTTGGT
ATCACACACCGTGTAATTTGTCACAGACTAGTTCAATTTCGCTTCGCGCT
CGCTGCGATATCACAAGGTTTTGCGGTAACAAGACAGCCACCAGCCACAG
GTTTAGACACCGACAACGTGGCGCAAGGCGGGTATTGCTCTAAGGATACC
AAAAGCCCCAATCGTCATGGTTACTGTAATGTTTTATCCAGGTTACGTCT
ACTGGAGTTGAGGCATATTTTTTGGCTTTGAATACTCCCATCCGATCCCC
ATCCTCCGCCCTGTCCTCCCTGTCTATACCTCGATGATGGGTACACATAA
TATTCATTCGCAGCATAAAACTCGAACTTCGTATGGAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig9335:4207..6045+

>mRNA_H-paniculata_contig9335.17115.1 ID=mRNA_H-paniculata_contig9335.17115.1|Name=mRNA_H-paniculata_contig9335.17115.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig9335:4207..6045+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGATAAAGAGCAGTTTGAAGAGTTTCGGGCGGTTGAGCATGGACAACA
GCAGCATCATGTCAATGCGGCGAAGGAACCTGCTGCTGCTACCTATGCAA
AGGAAGATAAAGAGCAGTTTGAAGAGTTTCGGGCGGTTGAGCATGGACAA
CAGCAGCATCATGTCAATGCGGCGAAGGAACCTGCTGCTGCTACCTATGC
AAAGAAACGGGGGAACAGCTGGTGGCGAGATGGCGCGGCAAAGGCGCTGG
CATCGAGACGCGAGAGTAAGATGAGCAATGCAACCACAGCAGCGACGCCG
CCAATCCCACCCCTCGAGAAACGGGGGAACAGCTGGTGGCGAGATGGCGC
GGCAAAGGCGCTGGCATCGAGACGCGAGAGTAAGATGAGCAATGCAACCA
CAGCAGCGACGCCGCCAATCCCACCCCTCGAGCATAAAACTCGAACTTCG
TATGGACATAAAACTCGAACTTCGTATGGA
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