mRNA_H-paniculata_contig9335.17114.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9335.17114.1
Unique NamemRNA_H-paniculata_contig9335.17114.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9335.17114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9335contigH-paniculata_contig9335:3562..4196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size205
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931161.9339826-CDS-H-paniculata_contig9335:3561..37231622931161.9339826-CDS-H-paniculata_contig9335:3561..3723Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9335 3562..3723 +
1691481618.3688743-CDS-H-paniculata_contig9335:3561..37231691481618.3688743-CDS-H-paniculata_contig9335:3561..3723Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9335 3562..3723 +
1622931161.949668-CDS-H-paniculata_contig9335:4155..41941622931161.949668-CDS-H-paniculata_contig9335:4155..4194Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9335 4156..4194 +
1691481618.3799708-CDS-H-paniculata_contig9335:4155..41941691481618.3799708-CDS-H-paniculata_contig9335:4155..4194Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9335 4156..4194 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9335.17114.1prot_H-paniculata_contig9335.17114.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9335 3562..4194 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9335.17114.1

>prot_H-paniculata_contig9335.17114.1 ID=prot_H-paniculata_contig9335.17114.1|Name=mRNA_H-paniculata_contig9335.17114.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
DGSDAGVKGVEDDEPKHPVDHDQQGFGSDGEEVDEAFNIAFSQMIHAEAT
GSQQLSFDGSIGYAGAP
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mRNA from alignment at H-paniculata_contig9335:3562..4196+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9335.17114.1 ID=mRNA_H-paniculata_contig9335.17114.1|Name=mRNA_H-paniculata_contig9335.17114.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=635bp|location=Sequence derived from alignment at H-paniculata_contig9335:3562..4196+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGGGAGCGACGCAGGAGTGAAGGGGGTCGAAGACGACGAACCCAAGCA
TCCAGTCGACCACGATCAGCAGGGTTTCGGGTCTGACGGAGAAGAGGTGG
ACGAGGCCTTCAATATCGCCTTTAGCCAGATGATTCACGCGGAGGCAACA
GGCTCACAGCAAGTGAGTTCCCTTGATTCGTGAAGGACTGGGAGAGTGGA
AGATATGCCTATAACTGTTCAAGGGGGAAACAACAATCTTGGCAGTGGAT
GTTTTATGGATGTGGCGTGTCTCGACTATTTTTCTACCTTTTGAAGGACG
GAAATTATGTGGTCGGCTCCGAGAGGAGGTGCAGGCAATGAAATCATCGC
TCTACCATTTGACTCGTTTAACAGGAGACCGTAAAGTTAGGAATAACTGT
GTGGGGGTGCCTGTATACTTCCCTCACCGAAACGAACACAGGTAGCGTTC
AGATCAATAGAAAAGAAAGTCACTGGACCTTCTTATGTACATTGTTGCAC
AAAGAGATGATGCCAATGCATGTTAAAACCCACCATCTGCTCCTCACCCT
TTCCACCACCCGTGTTACCACCGATGCGTTCGATATTCTCTAAGTTGTCC
TTTGACGGGTCGATAGGGTACGCGGGCGCCCCATC
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Coding sequence (CDS) from alignment at H-paniculata_contig9335:3562..4196+

>mRNA_H-paniculata_contig9335.17114.1 ID=mRNA_H-paniculata_contig9335.17114.1|Name=mRNA_H-paniculata_contig9335.17114.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig9335:3562..4196+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGGGAGCGACGCAGGAGTGAAGGGGGTCGAAGACGACGAACCCAAGCA
TCCAGTCGACCACGATCAGCAGGGTTTCGGGTCTGACGGAGAAGAGGTGG
ACGAGGCCTTCAATATCGCCTTTAGCCAGATGATTCACGCGGAGGCAACA
GGCTCACAGCAAGATGGGAGCGACGCAGGAGTGAAGGGGGTCGAAGACGA
CGAACCCAAGCATCCAGTCGACCACGATCAGCAGGGTTTCGGGTCTGACG
GAGAAGAGGTGGACGAGGCCTTCAATATCGCCTTTAGCCAGATGATTCAC
GCGGAGGCAACAGGCTCACAGCAATTGTCCTTTGACGGGTCGATAGGGTA
CGCGGGCGCCCCATTGTCCTTTGACGGGTCGATAGGGTACGCGGGCGCCC
CA
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