mRNA_H-paniculata_contig1272.1711.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1272.1711.1
Unique NamemRNA_H-paniculata_contig1272.1711.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1272.1711.1 vs. uniprot
Match: A0A6H5KKI6_9PHAE (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKI6_9PHAE)

HSP 1 Score: 330 bits (845), Expect = 2.770e-107
Identity = 168/249 (67.47%), Postives = 202/249 (81.12%), Query Frame = 3
Query:  378 TEVSREKFLLGSWVAMLGVASVAATQEQTAYQTRKKELFSSITGDDKSEFRDILEVGIGGNPSLGGFSNLKFYRPGQRIVGVDPALSDGSSQVLEDAVARAKKSGLELRALGGVVEELPFDTGSFDAVVSTLVFCSVRDPTAALREVSRVLRPGGKFVFVEHILAPEEGLSLLGLRQQQELLDPLQQQLAAGCHLTRQTDQLIRGATTGGREMSSFTGTRLFSRLESMENVRVGSMWPVSEQVFGVAVK 1124
            T++SRE+ L G   A  G A + A+Q+QT+Y+ RK++LF SI G  ++EFRDILEVG+GGNP +GGF+NL+FYR GQRI+GVDP LS   SQ LE A  +A+K GL LR +GG+ EELPF+TGSFDAVVSTLVFCSVRDP AALREVSRVLRPGGKF+FVEH+ AP+EGLS+LGLRQQQELLDPLQQ LA GCHLTR+TDQLIR +        S +  RLFSR+E++E+VR+ SMWPVSEQVFGV VK
Sbjct:   83 TKLSREQVLFGGLAACFGSAYLGASQDQTSYRARKRDLFRSIAGGGENEFRDILEVGVGGNPKVGGFNNLEFYRRGQRIIGVDPTLSGEPSQALERATEKAQKLGLTLRGVGGIAEELPFETGSFDAVVSTLVFCSVRDPAAALREVSRVLRPGGKFLFVEHVHAPDEGLSILGLRQQQELLDPLQQLLADGCHLTRETDQLIRDSAG-----ESPSRNRLFSRIETIESVRIKSMWPVSEQVFGVVVK 326          
BLAST of mRNA_H-paniculata_contig1272.1711.1 vs. uniprot
Match: D7FYW0_ECTSI (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYW0_ECTSI)

HSP 1 Score: 218 bits (554), Expect = 6.910e-65
Identity = 118/176 (67.05%), Postives = 136/176 (77.27%), Query Frame = 3
Query:  627 PALSDGSSQVL----------EDAVARAKKSGLELRALGGVVEELPFDTGSFDAVVSTLVFCSVRDPTAALREVSRVLRPGGKFVFVEHILAPEEGLSLLGLRQQQELLDPLQQQLAAGCHLTRQTDQLIRGATTGGREMSSFTGTRLFSRLESMENVRVGSMWPVSEQVFGVAVK 1124
            P LS G S VL          E A  +A+K GL LR +GG+VEELPF++ SFDAVVSTLVFCSVRDP AALREVSRVLRPGGKF+FVEH+ AP+EGLS+LGLRQQQELLDPLQQ LA GCHLTR+T QLIR +        S +  RLFSR+E++E+VR+ SMWPVSEQVFGV VK
Sbjct:   64 PCLSPGGSPVLTSRRLDFPALERATEKAQKLGLTLRGVGGIVEELPFESSSFDAVVSTLVFCSVRDPAAALREVSRVLRPGGKFLFVEHVHAPDEGLSILGLRQQQELLDPLQQLLADGCHLTRETGQLIRDSAG-----ESPSRNRLFSRIETIESVRIKSMWPVSEQVFGVVVK 234          
BLAST of mRNA_H-paniculata_contig1272.1711.1 vs. uniprot
Match: A0A835Z8C0_9STRA (Methyltransf_11 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8C0_9STRA)

HSP 1 Score: 207 bits (526), Expect = 4.090e-60
Identity = 116/270 (42.96%), Postives = 157/270 (58.15%), Query Frame = 3
Query:  408 GSWVAMLGVASVAATQEQTAYQTRKKELFSSITGDDKSEFRDILE------------------VGIGGNPSLGGFSNLKFYRPGQRIVGVDPALSDGSSQ-------------VLEDAVARAKKSGLELRALGGVVEELPFDTGSFDAVVSTLVFCSVRDPTAALREVSRVLRPGGKFVFVEHILAPEEGLSLLGLRQQQELLDPLQQQLAAGCHLTRQTDQLIRGATTGGREMSSFTGTRLFSRLESMENVRVGSMWPVSEQVFGVAVK 1124
            GS +A  G+   A +++   Y  RK+ LF +++ D       +LE                  +GIGGNP+LGGF+NL++Y  G  + GVDPAL DG++               + DA  +A + G++L A+GG  E+LP  T S DAVVSTLVFCSV+DP  A+ EV+RVLRPGGK++F+EH+ AP +G  L      Q LLDPLQ  +A+GCHLTR T++LI   T            +LFSR+E +E   VGS WP S Q+ GVAVK
Sbjct:   14 GSTLAAWGLVFAATSRDDVEYDARKRRLFQALSADQIEGGLHVLEAIAVKDNRMQLSITHNARIGIGGNPTLGGFTNLEYYPRGTVLSGVDPALEDGAAGGIVRAAQCASAALAVTDAAVKAARLGIDLTAVGGRAEQLPIATASCDAVVSTLVFCSVQDPAQAMSEVARVLRPGGKWLFMEHVAAPRDGPLLAS----QRLLDPLQIAIASGCHLTRHTEELILSRTQXXXXXXXXRAPQLFSRVEGLERFTVGSRWPASTQIMGVAVK 279          
BLAST of mRNA_H-paniculata_contig1272.1711.1 vs. uniprot
Match: A0A4D9CZT3_9STRA (Methyltransf_11 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZT3_9STRA)

HSP 1 Score: 166 bits (419), Expect = 4.040e-44
Identity = 114/285 (40.00%), Postives = 156/285 (54.74%), Query Frame = 3
Query:  321 LRTARGSTPQDTNMSIMGSTEVSR----EKFL-----LGSWVAMLGVASVAATQEQTAYQTRKKELFSSIT------GDDKSEFR--DILEVGIGGNPSLGGFSNLKFYRPGQRIVGVDPALSDGSSQVLEDAVARAKKSGLELRALGGVVEELPFDTGSFDAVVSTLVFCSVRDPTAALREVSRVLRPGGKFVFVEHILAPEEGLSLLGLRQQQELLDPLQQQLAAGCHLTRQTDQLIRGATTGGREMSSFTGTRLFSRLESMENVRVGSMWPVSEQVFGVAVK 1124
            +R +RG    +    +     VSR    E FL     LGS   +L      +  E+ AY+   +ELF+ ++      G+   + R   +LE+G+G         N+K+Y  G  +VG+DP L+  +  V   A ++AK   ++  AL G  E LPF   SFDAVVSTLVFCSV+D   AL EV+RVLRPGGKF+FVEHI A E+   +L   + Q ++DPLQ  L  GCHL R TD L+ G T GG +     G  LF R+E +  + + + WPVS QV GV VK
Sbjct:   31 VRGSRGDEQAEEKQKVASGEAVSRLSRRESFLPALIALGSGALLLN----KSLNEERAYEGLHQELFALLSASGSGAGEAGKDVRALKVLEIGVGQGV------NVKYYPSGCEVVGLDPNLNQDAMSV---AQSKAKARNIQWSALEGRAESLPFPDASFDAVVSTLVFCSVQDQARALTEVARVLRPGGKFLFVEHIWAGEKEHPVL--HRVQGIMDPLQAFLVNGCHLVRHTDDLLLGETKGG-DGRDREGVMLFDRVERLNYLEMDTQWPVSVQVAGVLVK 299          
BLAST of mRNA_H-paniculata_contig1272.1711.1 vs. uniprot
Match: W7TRI3_9STRA (S-adenosylmethionine-dependent methyltransferase domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRI3_9STRA)

HSP 1 Score: 167 bits (424), Expect = 7.880e-44
Identity = 115/284 (40.49%), Postives = 157/284 (55.28%), Query Frame = 3
Query:  324 RTARGSTPQDTNMSIMGSTEVSR----EKFL-----LGSWVAMLGVASVAATQEQTAYQTRKKELFSSIT------GDDKSEFR--DILEVGIGGNPSLGGFSNLKFYRPGQRIVGVDPALSDGSSQVLEDAVARAKKSGLELRALGGVVEELPFDTGSFDAVVSTLVFCSVRDPTAALREVSRVLRPGGKFVFVEHILAPEEGLSLLGLRQQQELLDPLQQQLAAGCHLTRQTDQLIRGATTGGREMSSFTGTRLFSRLESMENVRVGSMWPVSEQVFGVAVK 1124
            R +RG+   +    +    EVSR    E FL     LGS   +L      +  E+ AY+   +ELF+ ++      G+   + R   +LE+G+G         N+K+Y  G  +VG+DP L+  +  V   A ++AK   ++  AL G  E LPF   SFDAVVSTLVFCSV+D   AL EV+RVLRPGGKF+FVEHI A E+   +L   + Q ++DPLQ  L  GCHL R TD L+ G T GG       G +LF R+E +  + + + WPVS QV GV VK
Sbjct:  128 RGSRGNEQAEGKQKVASGEEVSRLSRRESFLPALIALGSGALLLN----KSLNEERAYEGLHQELFALLSASASGAGEAGRDVRAPKVLEIGVGQGV------NVKYYPSGCEVVGLDPNLNQDAMSV---AQSKAKARNIQWSALEGRAESLPFPDASFDAVVSTLVFCSVQDQARALTEVARVLRPGGKFLFVEHIWAGEKEHPVL--HRVQGIMDPLQAFLVNGCHLVRHTDDLLLGETKGGGGRDR-EGVKLFDRVERLNYLEMDTQWPVSVQVAGVLVK 395          
BLAST of mRNA_H-paniculata_contig1272.1711.1 vs. uniprot
Match: A0A7S1WP52_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WP52_ALECA)

HSP 1 Score: 149 bits (376), Expect = 2.930e-39
Identity = 90/190 (47.37%), Postives = 112/190 (58.95%), Query Frame = 3
Query:  534 ILEVGIGGNPSLGGFSNLKFYRPGQRIVGVDPALSDGSSQVLEDAVARAKKSGLELRALGGVVEELPFDTGSFDAVVSTLVFCSVRDPTAALREVSRVLRPGGKFVFVEHILAPEEGLSLLGLRQQQELLDPLQQQLAAGCHLTRQTDQLIRGATTGGREMSSFTGTRLFSRLESMENVRVGSMWPVSEQ 1103
            +LEVGI G P      NL+FY  G ++ G+D +L  G  Q   D   RA++ GL++  + G   +LPF+ GSFDAVV T V CSV DP  ALREVSRVL PGG+F +VEH+ A         L  QQ L+DPLQQ LA  CHL R TD LIR +  G    S      LFSR E+ +   V  MWP+S+Q
Sbjct:    9 VLEVGIAGAP------NLEFYPSGTQLTGLDSSLPGGDQQ--RDTRERARELGLDISWVMGDASQLPFEDGSFDAVVMTKVLCSVADPEVALREVSRVLAPGGRFGYVEHVAADPGS----PLETQQLLVDPLQQALAGNCHLHRDTDGLIRRSLRGSAAGSG----GLFSREEAGQRYEVWEMWPISQQ 182          
BLAST of mRNA_H-paniculata_contig1272.1711.1 vs. uniprot
Match: A0A7S1XQV9_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XQV9_9STRA)

HSP 1 Score: 149 bits (376), Expect = 2.150e-38
Identity = 101/257 (39.30%), Postives = 140/257 (54.47%), Query Frame = 3
Query:  357 NMSIMGSTEVSREKFL-LGSWVAMLGVASVAATQEQTAYQTRKKELFSSITGDDKSEFRDILEVGIGGNPSLGGFSNLKFYRPGQRIVGVDPALSDGSSQVLEDAVARAKKSGLELRALGGVVEELPFDTGSFDAVVSTLVFCSVRDPTAALREVSRVLRPGGKFVFVEHILAPEEGLSLLGLRQQQELLDPLQQQLAAGCHLTRQTDQLIRGATTGGREMSSFTGTRLFSRLESMENVRVGSMWPVSEQVFGVAVK 1124
            ++S+   T VSR   + +G + + +G+ +    + ++AY   K+ELF      D +    +LEVGIG    L G + L +Y  G R+ G++P L D ++  +     RA    L L    G  E+LPF  GSFDAVV++LV CS +DP A + E  RVLR GG+FVFVEHI A E+   +   R QQ  LDPLQQ+LA GCHL R+ D L + A   G          LF R+E +  V V S WP + Q+ G   K
Sbjct:   19 SLSLAARTGVSRGAAIAIGGYASGVGLWAARVARAESAYSDAKRELFGRYLRPDDA----VLEVGIG----LEG-ATLDYYPKGCRVTGLEPRLRDDNAAAMR---RRATARDLRLELTRGCGEDLPFPPGSFDAVVTSLVLCSAKDPKAVVEEAHRVLRRGGRFVFVEHIHALEDAAFM---RWQQATLDPLQQRLADGCHLQRENDALFKDAAERG----------LF-RIEELRYVDVPSRWPCNVQMMGCMAK 249          
BLAST of mRNA_H-paniculata_contig1272.1711.1 vs. uniprot
Match: A0A7S0N8D1_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N8D1_9CHLO)

HSP 1 Score: 147 bits (371), Expect = 9.900e-37
Identity = 96/238 (40.34%), Postives = 136/238 (57.14%), Query Frame = 3
Query:  435 ASVAATQE------QTAYQTRKKELFSSITGDDKSEFRDILEVGIGGNPSLGGFSNLKFYRPGQRIVGVDPALSDGSSQVLEDAVARAKKSGLELRALGGVVEELPFDTGSFDAVVSTLVFCSVRDPTAALREVSRVLRPGGKFVFVEHILAPEEGLSLLGLRQQQELLDPLQQQLAAGCHLTRQTDQLIRGATTGGREMSSFTGTRLFSRLE--SMENVRVGSMWPVSEQVFGVAVK 1124
            A +AA+ E      +   + RK+ LF+++    K    D+LE+GIG  P      NLK+YRPG R+VGV+P     +  + E A  +A+  GL L    GV E LP +  S D VV TLV C+V DP   L EV+RVLRPGG+++F++H+ A + G +LL    QQ LLD LQQ +A GCHLTR+T +LI  AT      S+  GT +    +  ++E   V  +W ++  V GVA +
Sbjct:  121 AVIAASMESGMDTYEANIEQRKQALFATLDAGAK----DVLELGIGTGP------NLKYYRPGTRVVGVEP-----NEYMDEYAREKAEALGLSLELRRGVGEALPLEDASVDVVVGTLVMCTVADPARVLAEVARVLRPGGQYLFIDHVAA-DPGTTLLF---QQRLLDGLQQFVAGGCHLTRKTGELIESATKSAVPSSAKAGTVIAPLFDDVTIERFMVDDIWVIAPHVAGVATR 339          
BLAST of mRNA_H-paniculata_contig1272.1711.1 vs. uniprot
Match: A0A7S2IAZ8_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2IAZ8_9DINO)

HSP 1 Score: 147 bits (370), Expect = 1.200e-36
Identity = 90/197 (45.69%), Postives = 114/197 (57.87%), Query Frame = 3
Query:  534 ILEVGIGGNPSLGGFSNLKFYRPGQRIVGVDPALSDGSSQVLEDAVARAKKSGLELRALGGVVEELPFDTGSFDAVVSTLVFCSVRDPTAALREVSRVLRPGGKFVFVEHILAPEEGLSLLGLRQQQELLDPLQQQLAAGCHLTRQTDQLIRGATTGGREMSSFTGTRLFSRLESMENVRVGSMWPVSEQVFGVAVK 1124
            +LE+GI G P      NL++Y  G R+VG+D  L     Q+  D    AK+ G+++  + G  E+LPF   SFDAVV T V CSV DP A LREVSRVL PGG+F +VEH+ A         L  QQ  +DPLQQ LA  CHL R TD+LI  +       S  T   LFSR ES+E  +V  MWP+++Q  GV  K
Sbjct:  156 VLEIGIAGAP------NLEYYPSGTRLVGLDGNLPGPGDQI--DIRKHAKEFGVDISWVRGDAEKLPFKDRSFDAVVMTKVLCSVIDPEAVLREVSRVLVPGGRFGYVEHVAADPGS----ALEAQQLFVDPLQQALAGNCHLHRDTDRLIHRSIG----TSDATTAGLFSREESVERYQVWEMWPIAQQAAGVVTK 336          
BLAST of mRNA_H-paniculata_contig1272.1711.1 vs. uniprot
Match: A0A7S3YFG5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YFG5_HETAK)

HSP 1 Score: 146 bits (368), Expect = 1.770e-36
Identity = 87/227 (38.33%), Postives = 130/227 (57.27%), Query Frame = 3
Query:  483 KELFSSITGDDKSEFRDILEVGIGGNPSLGGFSNLKFYRPGQRIVGVDPALSDGSSQVLEDAVARAKKSGLELRALGGVVEELPFDTGSFDAVVSTLVFCSVRDPTAALREVSRVLRPGGKFVFVEHILAPEEGLSLLGLRQQQELLDPLQQQLAAGCHLTRQTDQLIR----------GATTGGREMSSFTGTRL---FSRLESMENVRVGSMWPVSEQVFGVAVK 1124
            KE+F +I+G D   F D+LE+G+G         N+K+Y+ G ++ G+DP L + S  +++       K+ ++ +      E LP++  SFDAVV TLV C++ DP  A  E+ RVLRPGGK++FVEH+LA  +G S   L++QQE+LDPLQQ L  GCHL R+T+ ++           G    G   S     R    F++LE    V + S WP++ Q+ GV V+
Sbjct:  111 KEIFGAISGQD---FIDVLEIGVGTAV------NMKYYQKGTKLFGIDPYLDESS--LVKAKSTWIGKNNIDFQYAKASAETLPYEDCSFDAVVGTLVMCTIPDPQKAFEEIYRVLRPGGKYLFVEHVLA--DGPSHQALKKQQEVLDPLQQILVNGCHLARKTENILLVDCSQDKKGDGDDAQGEPSSGDPRRRAHYPFTKLEQYHEVYLDSRWPINRQISGVLVR 324          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1272.1711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKI6_9PHAE2.770e-10767.47Methyltransf_11 domain-containing protein n=1 Tax=... [more]
D7FYW0_ECTSI6.910e-6567.05Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A835Z8C0_9STRA4.090e-6042.96Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A4D9CZT3_9STRA4.040e-4440.00Methyltransf_11 domain-containing protein n=1 Tax=... [more]
W7TRI3_9STRA7.880e-4440.49S-adenosylmethionine-dependent methyltransferase d... [more]
A0A7S1WP52_ALECA2.930e-3947.37Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S1XQV9_9STRA2.150e-3839.30Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S0N8D1_9CHLO9.900e-3740.34Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A7S2IAZ8_9DINO1.200e-3645.69Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A7S3YFG5_HETAK1.770e-3638.33Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1272contigH-paniculata_contig1272:20071..24085 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score219.5
Seed ortholog evalue2.3e-54
Seed eggNOG ortholog2880.D7FYW0
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.methyltransferase activity
EggNOG OGsCOG0500@1,KOG4300@2759
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-19_002680.1
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size1368
Cds size1026
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928994.7264187-UTR-H-paniculata_contig1272:20070..203111622928994.7264187-UTR-H-paniculata_contig1272:20070..20311Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1272 20071..20311 -
1691480694.8270113-UTR-H-paniculata_contig1272:20070..203111691480694.8270113-UTR-H-paniculata_contig1272:20070..20311Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1272 20071..20311 -
1622928994.86211-UTR-H-paniculata_contig1272:23984..240851622928994.86211-UTR-H-paniculata_contig1272:23984..24085Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1272 23985..24085 -
1691480694.9008508-UTR-H-paniculata_contig1272:23984..240851691480694.9008508-UTR-H-paniculata_contig1272:23984..24085Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1272 23985..24085 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928994.7453156-CDS-H-paniculata_contig1272:20311..204021622928994.7453156-CDS-H-paniculata_contig1272:20311..20402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1272 20312..20402 -
1691480694.8382506-CDS-H-paniculata_contig1272:20311..204021691480694.8382506-CDS-H-paniculata_contig1272:20311..20402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1272 20312..20402 -
1622928994.764767-CDS-H-paniculata_contig1272:20725..209011622928994.764767-CDS-H-paniculata_contig1272:20725..20901Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1272 20726..20901 -
1691480694.8483088-CDS-H-paniculata_contig1272:20725..209011691480694.8483088-CDS-H-paniculata_contig1272:20725..20901Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1272 20726..20901 -
1622928994.7803714-CDS-H-paniculata_contig1272:21594..216391622928994.7803714-CDS-H-paniculata_contig1272:21594..21639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1272 21595..21639 -
1691480694.8582222-CDS-H-paniculata_contig1272:21594..216391691480694.8582222-CDS-H-paniculata_contig1272:21594..21639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1272 21595..21639 -
1622928994.8013582-CDS-H-paniculata_contig1272:22013..222131622928994.8013582-CDS-H-paniculata_contig1272:22013..22213Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1272 22014..22213 -
1691480694.8688922-CDS-H-paniculata_contig1272:22013..222131691480694.8688922-CDS-H-paniculata_contig1272:22013..22213Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1272 22014..22213 -
1622928994.8173475-CDS-H-paniculata_contig1272:22840..229261622928994.8173475-CDS-H-paniculata_contig1272:22840..22926Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1272 22841..22926 -
1691480694.8769965-CDS-H-paniculata_contig1272:22840..229261691480694.8769965-CDS-H-paniculata_contig1272:22840..22926Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1272 22841..22926 -
1622928994.8310733-CDS-H-paniculata_contig1272:23347..234851622928994.8310733-CDS-H-paniculata_contig1272:23347..23485Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1272 23348..23485 -
1691480694.8850627-CDS-H-paniculata_contig1272:23347..234851691480694.8850627-CDS-H-paniculata_contig1272:23347..23485Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1272 23348..23485 -
1622928994.847031-CDS-H-paniculata_contig1272:23694..239841622928994.847031-CDS-H-paniculata_contig1272:23694..23984Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1272 23695..23984 -
1691480694.892831-CDS-H-paniculata_contig1272:23694..239841691480694.892831-CDS-H-paniculata_contig1272:23694..23984Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1272 23695..23984 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1272.1711.1prot_H-paniculata_contig1272.1711.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1272 20312..23984 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1272.1711.1

>prot_H-paniculata_contig1272.1711.1 ID=prot_H-paniculata_contig1272.1711.1|Name=mRNA_H-paniculata_contig1272.1711.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=342bp
MGIVAIRRSCKHTLLRIAMCSLLHLLQHVSGFCHVHSLQASWAAQGSAAP
WRARAQQAICGGGNYHRRPHVHRLRTARGSTPQDTNMSIMGSTEVSREKF
LLGSWVAMLGVASVAATQEQTAYQTRKKELFSSITGDDKSEFRDILEVGI
GGNPSLGGFSNLKFYRPGQRIVGVDPALSDGSSQVLEDAVARAKKSGLEL
RALGGVVEELPFDTGSFDAVVSTLVFCSVRDPTAALREVSRVLRPGGKFV
FVEHILAPEEGLSLLGLRQQQELLDPLQQQLAAGCHLTRQTDQLIRGATT
GGREMSSFTGTRLFSRLESMENVRVGSMWPVSEQVFGVAVK*
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mRNA from alignment at H-paniculata_contig1272:20071..24085-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1272.1711.1 ID=mRNA_H-paniculata_contig1272.1711.1|Name=mRNA_H-paniculata_contig1272.1711.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4015bp|location=Sequence derived from alignment at H-paniculata_contig1272:20071..24085- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGAAGAATTCAAACTGGAACAGGGAATCCCGGTATCCTCTCTGCAGAGG ACTGCTGCTTTCTGCTAGGCTTGCAGAGTTACTTCCTTGTTGCTGTCTAC CATGGGTATCGTTGCAATTCGTCGTTCGTGCAAACATACCCTATTGCGTA TTGCAATGTGTTCGCTCCTCCACCTACTGCAACATGTGAGCGGATTTTGT CATGTACATTCACTTCAAGCATCGTGGGCAGCACAAGGCAGCGCGGCTCC TTGGCGAGCGAGAGCGCAGCAAGCAATATGCGGTGGTGGTAATTATCACC GACGACCCCATGTCCACCGATTACGAACAGCCAGAGGATCGACACCACAA GATACCAATATGAGTATCATGGGATCGACCGAAGTATCAAGGTACAAAAC ACTAAGGTATTAACTGTGTACTGTACTCCACTGACTATGCTGTACCTCGT GTAATACTGGCTGTAGTGGGAGAGAGACGAGATACGATGGTACCGACATG AAGCTCGTCATGTACAATGACAGAGTTAGAGCAACAGATGGGGTGGGGGG TGCTGACCGGTGTCCTCAAGATGATCGATGTTCTTATTGAAATCGGGCAG GGAGAAATTTCTCCTGGGAAGCTGGGTGGCGATGCTTGGCGTGGCGTCTG TGGCCGCGACGCAGGAGCAAACAGCGTACCAGACGAGGAAGAAGGAGCTC TTTTCAAGCATAACTGGGGACGACAAGAGCGAGTTCCGGTGAAATTTTCA AGTTTCAAGATTTGACAATAGAGAGCAAACTTGCGCAGCCAGCATGTTTA CAACAGCAGTTCCACGACGCGTCAGTCCCGCTCAGCACGCCTTTTTCAGC CCCGCCTCACCTATTATGTACAGCACAGAATACAGACAGTACTGAGTTCT GTTTACTATGTGGAACAGACAAACCTAGCGGCTATATAGAGCTCTACACT TGCAGTGAGAGAACCAAAAAAATATGCTGGTGTGTTTAGCTGCTCGACAC GTTCTCGGGTTTTCTGATTCTCGGGTCAAAGGATATGAATTGCAAATGAT ATCCTTTGTTTCGTGCCAAAGGATCCCCATCGGATAACAAGTACTTGTTT GAAATCTCAATTAACTCCTTGATTTATATGCCTCGTCCGACTCTACGATA ATCTTGAAGAGATATCCTGGAGGTCGGCATTGGAGGAAACCCAAGCTTGG GAGGCTTTAGCAATCTGAAGTTCTACCGCCCAGGACAACGAATAGGTGCG CATTCTCAGAAAGGGCCGTGCTAAACCAAAGCGGCATATTTTCCACAAGC CACTGGTTTTCCCTCAGTTTTTTTTTTTCCCGAAATCTGAAATGGAGAAT AACAGCTACTCTTTTTTTCATCCTCTGTTATTTCCGTTTTCCTTTTTCTC TGTTCATGGGGTATAATATTCTCAAACCTACATGAACGACACGACACAAT CGTTATAAAGAGGCAGAAGTCAGAACAAAAATGGGAAATGGCAGTTTGAG GCAAGAAGGCATGCTTGACATGGAAAATATATATTTTTTCGAAAACTGGG GGAAAATGATATCAAAAAACAAATAGAAAACGGAAAATCGGGACAGCTCA TTTTGCAAGACTCCGAAGTGGGGTGATCGCACGCGGGGTAGTAGGAATGC GCACGGACGTCGATCGCGTCTACTACTTGTACTACGTATCGCTTCACCTC CCGTTCAGTTCGCCCAATGGCAGGATATTCTCGAGCAAACAGACAGAGAA CTTCGCCACGCCTTGCGCCTTGTGCAGCGATGCCGCGCGCCGAACAAATC TGGAACATGATACATACACGAACCCTCTAGTCTCCCTTCCCCCAACCCAT TCCATGACATTGTGCTATCTAGTTGGTGTGGATCCTGCATTATCAGACGG AAGCTCGCAAGTCCTCGAGGATGCGGTCGCCCGCGCAAAAAAAAGCGGAT TGGAGCTTAGGGCGTTGGGAGGAGTGGTGGAAGAGTTACCTTTCGACACT GGCTCCTTCGACGCGGTGGTATCGACGCTGGTGTTCTGCTCTGTGCGCGA CCCGACCGCGGCGCTTCGCGAGGTGTGTCTGTCATGTGTGTTTTGTGAGT GCAGTTTCAAGTGATGGGCTGCTGGTTTTCGATTGTGGGCGCGTGCTAGA TGGTAGCTGTGGATGTGGAATCAGCGATGATTTCTTTTGGGGGGGGGGGG ACCCACTGTAGGGTACCCGTTTTTATTCGTACCGATTCTTGTATGCAATT CAAAAACATGTGTACATGATTTGTTAAATCTCGTTGTCCAGAGTTGTGAA CTACAATGTGTCGATGCAACAATGCACCAGGCCTTCACGCCACCTCCCAC TATGAATAACGTCAAAATGGCGCAAACCGATGCTGTGTTCCGTACCTTGC CCACTTTGTTATGTGTTATATGTCCTTTTTTCGCGCCGTGGGCCAGGTGT CGAGGGTGCTTCGTCCAGGTGGAAAGTTCGTGTTTGTTGAGGTAAGTGTA TATATCACATCATAGGACACCCTGCCGGGTGACGATGCAGGTTAGACAGA TGCCCGTGCCAGCGGCCCATGGGACGTTCAGAGATCATCTTCATACCATA ATCCCTCTCCTGCTGCAGTAGTATTTCACATTGGCTAACGGACTGTTTTC GGTGGGAGTAATCCGATGCGTCACGGAGTGAGGACAGGGACATATAAAGC CTGCTACCCGCGAACCTGTGTGCGAATCGGCTGCTTGGATTCAACTAATA TGCCTCAAGTACATCCCAATCCGATGGTCCTAAACGTATGATGTACGATG TATCTACGGATAAACTCGCCGCTGATTACTATTTAATAGAGCGTATGTTT TAATTTTTCTTCGAAAAGGCGTTACATAGTATAGGGAATCCATTGTGTGA TGGTGTATGAGCGACTGTTCATCCTGAGCGACGATTGTTCGGACTCTATA CTGACTGTGCAGGTAATCATGTAATCATGTAATCATGTAATTATGGTAGC TGATCATGAAGAAAATCTGCGATGCTTCTTTGACTTGACGTCAAAAACTT TCATATCGAGAGATTCCCTTCCCCCCCTGTCGTTCCGCCCGAAGCTACCC CCCCCCCCCCCCGGGCCACACCCCCGCGAGCGATGCCTCTAATGCGCCAT TTGTTGTCGATATTGCTCTATTTCTTTGGCACAGCACATTCTCGCCCCAG AAGAGGGATTGTCACTGTTGGGTCTCCGTCAGCAGCAGGAACTATTGGAC CCGCTGCAACAGCAGCTGGCAGCAGGGTGCCATCTTACACGACAAACCGA TCAGTTAATCAGAGGAGCCACCACGGGGGGTAGAGAAATGTCATCCTTCA CTGGCACAAGGTATGTGGGTATAATACAGATGCCGAGGTGTTCTCCTATT TTTAGTGTTGTCACGTTTGGGAGGCGTGCTGTGGTGCGCTGAACATGTAT ACTTGGAGTATATATATACATATTGGAAATATTTTGTATATATCTAGCTC TACAAACCCAACCGTTATTTCCGTTTTGAAAATGAATCAAGACTGTGTCG CTGATGCTGACACATTTGTTTCGTCCTGTCAGTTCATAAATTTATTGTGC ATTCCCCCCATCCTTTGCTTCCGTCTCTGCGACCCTGCCTACCGTGTGTC CTACGGGCACGCGACCCATTTCGTCGACAGCAGGCTGTTCTCGCGGCTGG AGAGCATGGAAAACGTGCGAGTGGGTAGCATGTGGCCCGTGTCGGAGCAA GTGTTCGGCGTCGCCGTTAAGTGAACAAGCATCATCGCTGTTAGGTTCTG GACTGTTCGAAACTGAACACATGTGTGTGTACAGCTCTGTATGTACGATC CTCGATTTTGCTTGTTGTGGATGCAATTTCTATCTAATCATTCCATTTGA TCGGGGATTTAAAAAATCTAAAACACCGTTTTCCGTATGTAAAATGGCCT TTCGAATACGAGGTTTGCCTTGACCCGCCAAGTCATGTATATCTGACCGT GGTGGAAAATATTCT
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Coding sequence (CDS) from alignment at H-paniculata_contig1272:20071..24085-

>mRNA_H-paniculata_contig1272.1711.1 ID=mRNA_H-paniculata_contig1272.1711.1|Name=mRNA_H-paniculata_contig1272.1711.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2052bp|location=Sequence derived from alignment at H-paniculata_contig1272:20071..24085- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTATCGTTGCAATTCGTCGTTCGTGCAAACATACCCTATTGCGTAT
TGCAATGTGTTCGCTCCTCCACCTACTGCAACATGTGAGCGGATTTTGTC
ATGTACATTCACTTCAAGCATCGTGGGCAGCACAAGGCAGCGCGGCTCCT
TGGCGAGCGAGAGCGCAGCAAGCAATATGCGGTGGTGGTAATTATCACCG
ACGACCCCATGTCCACCGATTACGAACAGCCAGAGGATCGACACCACAAG
ATACCAATATGAGTATCATGGGATCGACCGAAGTATCAAGATGGGTATCG
TTGCAATTCGTCGTTCGTGCAAACATACCCTATTGCGTATTGCAATGTGT
TCGCTCCTCCACCTACTGCAACATGTGAGCGGATTTTGTCATGTACATTC
ACTTCAAGCATCGTGGGCAGCACAAGGCAGCGCGGCTCCTTGGCGAGCGA
GAGCGCAGCAAGCAATATGCGGTGGTGGTAATTATCACCGACGACCCCAT
GTCCACCGATTACGAACAGCCAGAGGATCGACACCACAAGATACCAATAT
GAGTATCATGGGATCGACCGAAGTATCAAGGGAGAAATTTCTCCTGGGAA
GCTGGGTGGCGATGCTTGGCGTGGCGTCTGTGGCCGCGACGCAGGAGCAA
ACAGCGTACCAGACGAGGAAGAAGGAGCTCTTTTCAAGCATAACTGGGGA
CGACAAGAGCGAGTTCCGGGAGAAATTTCTCCTGGGAAGCTGGGTGGCGA
TGCTTGGCGTGGCGTCTGTGGCCGCGACGCAGGAGCAAACAGCGTACCAG
ACGAGGAAGAAGGAGCTCTTTTCAAGCATAACTGGGGACGACAAGAGCGA
GTTCCGAGATATCCTGGAGGTCGGCATTGGAGGAAACCCAAGCTTGGGAG
GCTTTAGCAATCTGAAGTTCTACCGCCCAGGACAACGAATAGAGATATCC
TGGAGGTCGGCATTGGAGGAAACCCAAGCTTGGGAGGCTTTAGCAATCTG
AAGTTCTACCGCCCAGGACAACGAATAGTTGGTGTGGATCCTGCATTATC
AGACGGAAGCTCGCAAGTCCTCGAGGATGCGGTCGCCCGCGCAAAAAAAA
GCGGATTGGAGCTTAGGGCGTTGGGAGGAGTGGTGGAAGAGTTACCTTTC
GACACTGGCTCCTTCGACGCGGTGGTATCGACGCTGGTGTTCTGCTCTGT
GCGCGACCCGACCGCGGCGCTTCGCGAGTTGGTGTGGATCCTGCATTATC
AGACGGAAGCTCGCAAGTCCTCGAGGATGCGGTCGCCCGCGCAAAAAAAA
GCGGATTGGAGCTTAGGGCGTTGGGAGGAGTGGTGGAAGAGTTACCTTTC
GACACTGGCTCCTTCGACGCGGTGGTATCGACGCTGGTGTTCTGCTCTGT
GCGCGACCCGACCGCGGCGCTTCGCGAGGTGTCGAGGGTGCTTCGTCCAG
GTGGAAAGTTCGTGTTTGTTGAGGTGTCGAGGGTGCTTCGTCCAGGTGGA
AAGTTCGTGTTTGTTGAGCACATTCTCGCCCCAGAAGAGGGATTGTCACT
GTTGGGTCTCCGTCAGCAGCAGGAACTATTGGACCCGCTGCAACAGCAGC
TGGCAGCAGGGTGCCATCTTACACGACAAACCGATCAGTTAATCAGAGGA
GCCACCACGGGGGGTAGAGAAATGTCATCCTTCACTGGCACAAGCACATT
CTCGCCCCAGAAGAGGGATTGTCACTGTTGGGTCTCCGTCAGCAGCAGGA
ACTATTGGACCCGCTGCAACAGCAGCTGGCAGCAGGGTGCCATCTTACAC
GACAAACCGATCAGTTAATCAGAGGAGCCACCACGGGGGGTAGAGAAATG
TCATCCTTCACTGGCACAAGGCTGTTCTCGCGGCTGGAGAGCATGGAAAA
CGTGCGAGTGGGTAGCATGTGGCCCGTGTCGGAGCAAGTGTTCGGCGTCG
CCGTTAAGTGAGCTGTTCTCGCGGCTGGAGAGCATGGAAAACGTGCGAGT
GGGTAGCATGTGGCCCGTGTCGGAGCAAGTGTTCGGCGTCGCCGTTAAGT
GA
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