mRNA_H-paniculata_contig9322.17106.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9322.17106.1
Unique NamemRNA_H-paniculata_contig9322.17106.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig9322.17106.1 vs. uniprot
Match: A0A6H5K2E2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2E2_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 4.300e-52
Identity = 87/122 (71.31%), Postives = 106/122 (86.89%), Query Frame = 1 
Query:   28 GPRLGKLQGLRRD-EDDDCCGKRRSPSKKEGIKLLPLILMFVMFGPVVLTGLIYVFEIVANSEFAVKIGLSDDPRTRLTKFYTKYNPTKMRDVDKLMRKYQGRYAEMFKKLEDKYVRVSSKQ 390
            GPRLG LQGL+R+ +DDD   K R P KKEGIK+LPLILMFVMFGPVVLTGLI+VF+ VANS++ +KIGL+DDPRTRLTKFY K+NPTKMRDVDKL++KY+GRY EMF++L+ KY R  +K+
Sbjct:    5 GPRLGNLQGLKREGDDDDPQAKMRRP-KKEGIKILPLILMFVMFGPVVLTGLIFVFDYVANSDWGIKIGLADDPRTRLTKFYKKHNPTKMRDVDKLLKKYKGRYPEMFQRLDAKYNRRKTKE 125
[Close]
BLAST of mRNA_H-paniculata_contig9322.17106.1 vs. uniprot
Match: A0A835ZDU7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDU7_9STRA)

HSP 1 Score: 110 bits (276), Expect = 4.280e-28
Identity = 61/134 (45.52%), Postives = 87/134 (64.93%), Query Frame = 1 
Query:   16 PVSGGPRLGKLQGLRRDEDDDCCGKRRSPSK--------KEGIKLLPLILMFVMFGPVVLTGLIYVFEIVANSEFAVKIGLSDDPRTRLTKFYTKYNPTKMRDVDKLMRKYQGRYAEMFKKLEDKYVRVSSKQK 393
            PVSGGPRLGKL+GL   +      KR+  SK        K G+  +P+ILMFV+FGP VL   +Y+F+ V+ S++ + +GLS     +LT FY ++NPTK+R+V  L RKY+GR AE+  +L+DKY R+   +K
Sbjct:   44 PVSGGPRLGKLKGLGESK------KRKGGSKGVPAEAPAKGGLNWMPIILMFVVFGPAVLPVFVYLFDKVSTSDWGINMGLSRSLEAKLTDFYKQHNPTKLREVPSLARKYKGRDAEIMARLQDKYKRLEDLKK 171
[Close]
BLAST of mRNA_H-paniculata_contig9322.17106.1 vs. uniprot
Match: A0A448ZFC5_9STRA (PPIase cyclophilin-type domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZFC5_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.920e-7
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:  241 DPRTRLTKFYTKYNPTKMRDVDKLMRKYQGRYAEMFKKLEDKY 369
            D RTRLTKFY KYNP+K+  VD  ++KY+GR  EMF+KLE KY
Sbjct:  668 DYRTRLTKFYEKYNPSKIDSVDANLKKYEGREEEMFRKLEAKY 710
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9322.17106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K2E2_9PHAE4.300e-5271.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZDU7_9STRA4.280e-2845.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A448ZFC5_9STRA2.920e-765.12PPIase cyclophilin-type domain-containing protein ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9322contigH-paniculata_contig9322:348..4101 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.6
Seed ortholog evalue5.1e-40
Seed eggNOG ortholog2880.D8LIN0
Hectar predicted targeting categorysignal anchor
EggNOG OGs2D02J@1,2SCJ9@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_004490.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size417
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9322.17106.1prot_H-paniculata_contig9322.17106.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9322 348..4101 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931160.9022996-CDS-H-paniculata_contig9322:347..4641622931160.9022996-CDS-H-paniculata_contig9322:347..464Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9322 348..464 -
1691481617.8993878-CDS-H-paniculata_contig9322:347..4641691481617.8993878-CDS-H-paniculata_contig9322:347..464Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9322 348..464 -
1622931160.9190106-CDS-H-paniculata_contig9322:1049..12261622931160.9190106-CDS-H-paniculata_contig9322:1049..1226Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9322 1050..1226 -
1691481617.9138386-CDS-H-paniculata_contig9322:1049..12261691481617.9138386-CDS-H-paniculata_contig9322:1049..1226Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9322 1050..1226 -
1622931160.9400942-CDS-H-paniculata_contig9322:3978..41011622931160.9400942-CDS-H-paniculata_contig9322:3978..4101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9322 3979..4101 -
1691481617.92676-CDS-H-paniculata_contig9322:3978..41011691481617.92676-CDS-H-paniculata_contig9322:3978..4101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9322 3979..4101 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9322.17106.1

>prot_H-paniculata_contig9322.17106.1 ID=prot_H-paniculata_contig9322.17106.1|Name=mRNA_H-paniculata_contig9322.17106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
MAINPPVSGGPRLGKLQGLRRDEDDDCCGKRRSPSKKEGIKLLPLILMFV
MFGPVVLTGLIYVFEIVANSEFAVKIGLSDDPRTRLTKFYTKYNPTKMRD
VDKLMRKYQGRYAEMFKKLEDKYVRVSSKQKVRFWENP*
back to top

mRNA from alignment at H-paniculata_contig9322:348..4101-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9322.17106.1 ID=mRNA_H-paniculata_contig9322.17106.1|Name=mRNA_H-paniculata_contig9322.17106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3754bp|location=Sequence derived from alignment at H-paniculata_contig9322:348..4101- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGATCAATCCTCCCGTATCTGGAGGCCCTCGACTGGGCAAGCTTCA
AGGGTTGAGGCGAGATGAAGATGATGACTGCTGCGGAAAGCGACGCTCTC
CCTCGAAAAAAGAAGGGATCAAGGTGGGGGGGAAAAGCAGATGTTTATTG
CTTGTTGTAATTTACAGTCAAATTCAGATTTTCCGTCTGTAGTGACATTC
ACTCGTCAAACTGAAAGGCACATCATTCTCGACATAAAACGTCTACGTGC
GGACGAGCCTCACTCCAGATTCAGCCTGCGCGCTTAGTGGTGTAAGAAAT
TGATATAGTTTGATTTGCAGGTGTATGGAGACTCTTTATATACAGCAGTG
GATGGTGTGAGACTCTTGATATGGAGCAGTGGACAGAGTGAAACATCTTC
GCCTTTTCCTGTAGCGTAAGAACACTTCATCCTACAAGGCTATGTGCGCT
AGTGTTTGATTGGGCCTAGTGTCGTCCCACGATCCCCCGCACCAATTTAG
TGTGCTACATTTTGCCTTATACAAACACCAGATATGGAAGAAGAGTTTGG
TTCAGAACGGACAGTATTGACAGACAGTGCAGCCAAGTCCCTACATAATC
CGTAGCACCATATAGCCTCATGCTGGATGGCAACGTAGTTAACGTACCAA
GGTGTATGGGCAAGGTAGATCATCCCATGTGTTGTGATGCGCCTGAGTTG
TATGCATCGACTCTCACCTCTACTATATAACAGTCAGTATTGAGTAGACC
GTGTCACTGCCTCTCTGCGGTCTATGTATTGACTCATCGAATTACGAGGA
TACGGTGAGTGTGCCATAGTACAGCGGAGTAGTTACAACAGCGACGTGCT
CCTGAATGTGTGATCTTGATTACTTTGTCTCCTTTGCCCATGCGAGTGCC
ACGTGTGTGTGTATATATATATATATATATACACAAGGACCTACGCCCGA
ACGGGTAGCGTAGCTCGTGAACTGAGCATGACTGGAAGTCTAGTCAGAGG
TCTTTTAGTGGGTGCAACTCCCACACCTACTTGGTTCTACAGAACCGGGG
TGGTGCCTACCCCGCAGAGTAACAAATAACTGTGTTCTGTTAAAGGAAAT
GTAGAAATACTTCGGTAGAAACACTTGAGTATGGAAACATCGGATAAAGG
TTTTTACCTTAGCCTTCCGCAGGTTAAAACCCCCCCCCAAAATATATATT
TATATATATATATATGTTTCTGCCGACTGGTCATAATCTAGACTGGTAAA
TAAATGAATTGAAACAAGTCCCGTCACAACTTCAATTTTTATTGTCACCC
GACCTCTGATTTTGAGTATTCTAAATATCGTCTGTGCATGCTTGCGACAA
TGCCAGGAGGGATGTCGATACTACTTGCGCCTTGCGATAAATGCCTTGCG
GTATGTGTGCCTTGCGGTATGTGTGCATGTACTTGTATATTATACCTTTC
TGCTATATTATGCGCCCGCGCTTTGTTATTTTCTGTCTTACGGGCAACAG
AAGAGTGAAAATATCTAATTTGAGATTATGGTCGGTACATCGCACAACAA
GGACGCTAAGAACCGTACCGGACGAGATGCGCGTGCTGTAACGGTCGAAT
GTCTTACATCGCGCTCTCTCAGCGGCGTTATTCCACCCGCTGTTGAGTCG
CAAACAAGAGTCCGGGCACGTGAACGAGTGCCACCATTCTTCAGTCGGGT
AAAAGGCACATGTAGCAATGTCAATCAATTGTCTCCAAGTTTTGGATTGT
TTGCTTGAACATCATTCAGTCAACCCCCCGAGAGTTTAACCACGCGTAGA
CAAACCCCGGCATCCGAGCACTCACGGGATGGCGAAGAAACCAGGGACCC
CAATCGGTGACGCTAGGCGCCTTGGCGGGTAATGCAAAGCGACGCATCGG
GCTGAGGCGCGAAAATCCATCCGGAGACGCTTGACGCCAACGCCCCGATC
GGTCAGGCAAAACGCAGCGCAGGTGATGCAAGCGCTGCGTCGGTCAGGTT
GCCGTCGCCTGGGACGGTGGCGCTGCCCGCGGAGGCACGGCTGGGAGAGC
GAGTGCAATTCAAGGATTTGGGCAATGCAAATTTTGGCAGTGTAAAAATC
CGTCGTGCACCTCGCTCCGTGCCTCTGATTCATTCTCCCGGCGCGCCCAT
GCTGCCCACAATGACGAGGTCCATGCTGTCCGGCGCACAGTGCGCACGGG
GGAGCAGGATAGACCGACCGCTGACTGCATCATCTCGTACTCTATTGTTG
TTCTCTAGCTCGAAAGCGAGTTCCCCGTCGCGCCGGCCATGGGTTAATAT
TGAGCGACACCCATTAGATAGCAGCCACCGGCGAGCTTTAGATCAGTACG
TCTTCTCTTCTCGTGTTTCGGCGTCCTGTTTGCCGAGTGGTGGTCACGTC
AGCAGCACTCCCGCACCGTGCGGTGGAACCTGTATTCAGGGGGGGGGAAA
TGTAATTGTGTGCTTGGTAAATATGCACTAAGGCTCTACTAGTTCAAGGG
TCTCAACAGACAAGTTACCCAGGCCTCCATACGAATTGCCATTTGTTGAT
CGATGACTTGTTTGGTGGCATTTGTTGTGGCGATTTGGCGGGAACAAGAA
GGAAAATGACCTGATTATTGCCGTATTACTGTTCGACACGTGCTTCCTTT
CGCCCTCTCTGGCGCACTGAATGTGTTTGTATATACCACTCAACGATAAA
TGGAACACTACGATACCGTAAAAGTAATTATACAGTAGGACTTTACGCAG
CATTGAAAGCCAAACTTGATAAGTGTTCCTTTTCGGCCGGTGAATCAAAT
ATTAAATATTTCACACACGGCGTTTTTGCCTGTCCTCATCGTACGATACC
TGTTCTGGATAATATTCCGCCGCAGCTATTGCCGCTGATTCTGATGTTTG
TCATGTTCGGACCGGTGGTGCTGACGGGTCTCATCTACGTCTTCGAGATC
GTGGCCAATAGCGAGTTCGCCGTGAAGATAGGCTTGTCCGATGACCCCCG
TACGCGATTGACCAAGTTCTACACCAAGTACAATCCGACCAAGATGCGCG
ATGTGAGCTAGTACAGTTACACTTGTAGCTTGAGAGCTAGCTCATATTTA
TAGGGGTCGGTGTTCAACTATTTTTTGCCTCTCGGAAACGTTTTTTGGAA
GGGAGGGGGGCGTTTCATACAATTAGCTGGTTGACAAGGGTATGATGCGA
TGTATGATACAGTACGATGACGATATGCTCGTTGAATGTGGATAATACGT
TAAGGCAGAGCGCATCTGTAGCAGTAGTTAGGTGACTGTTTTTTAAATGT
ATTATTTTTAAGCTGTTTGGAATTGTCCTTTGCTTTGTTCTTTGTCGAGT
AGGTCGTTGCGGTGGTTTGTGGTATTAGTGACGGCGTTTTCGTCGAGGAT
ATGTCCAGAGTAATTTGATTTTCTTTGAGTATAGGAGTGGGGTTTCAAGG
CTGGTGAGAAATAAGGACTTGATAGATTTTACCCTGCTGGATGAAAGTAT
TCAAGTATTGACAAGACCAAGCTATTTCAAGGTTGAAAATGAAAAGACTG
TTATTTTCAAGGATTATTGTCGAAGTTTAAAATAACGGTAACGATATTTA
CCGATTAATATATATGTTTCCCGGCCAAAAATGACAGGTGGACAAGCTAA
TGAGGAAATACCAGGGCCGGTACGCGGAGATGTTCAAGAAGCTTGAGGAT
AAGTATGTACGAGTCAGCTCAAAGCAAAAGGTGAGATTTTGGGAAAATCC
TTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig9322:348..4101-

>mRNA_H-paniculata_contig9322.17106.1 ID=mRNA_H-paniculata_contig9322.17106.1|Name=mRNA_H-paniculata_contig9322.17106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at H-paniculata_contig9322:348..4101- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGATCAATCCTCCCGTATCTGGAGGCCCTCGACTGGGCAAGCTTCA
AGGGTTGAGGCGAGATGAAGATGATGACTGCTGCGGAAAGCGACGCTCTC
CCTCGAAAAAAGAAGGGATCAAGATGGCGATCAATCCTCCCGTATCTGGA
GGCCCTCGACTGGGCAAGCTTCAAGGGTTGAGGCGAGATGAAGATGATGA
CTGCTGCGGAAAGCGACGCTCTCCCTCGAAAAAAGAAGGGATCAAGCTAT
TGCCGCTGATTCTGATGTTTGTCATGTTCGGACCGGTGGTGCTGACGGGT
CTCATCTACGTCTTCGAGATCGTGGCCAATAGCGAGTTCGCCGTGAAGAT
AGGCTTGTCCGATGACCCCCGTACGCGATTGACCAAGTTCTACACCAAGT
ACAATCCGACCAAGATGCGCGATCTATTGCCGCTGATTCTGATGTTTGTC
ATGTTCGGACCGGTGGTGCTGACGGGTCTCATCTACGTCTTCGAGATCGT
GGCCAATAGCGAGTTCGCCGTGAAGATAGGCTTGTCCGATGACCCCCGTA
CGCGATTGACCAAGTTCTACACCAAGTACAATCCGACCAAGATGCGCGAT
GTGGACAAGCTAATGAGGAAATACCAGGGCCGGTACGCGGAGATGTTCAA
GAAGCTTGAGGATAAGTATGTACGAGTCAGCTCAAAGCAAAAGGTGAGAT
TTTGGGAAAATCCTTGAGTGGACAAGCTAATGAGGAAATACCAGGGCCGG
TACGCGGAGATGTTCAAGAAGCTTGAGGATAAGTATGTACGAGTCAGCTC
AAAGCAAAAGGTGAGATTTTGGGAAAATCCTTGA
back to top