mRNA_H-paniculata_contig9321.17105.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9321.17105.1
Unique NamemRNA_H-paniculata_contig9321.17105.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9321.17105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9321contigH-paniculata_contig9321:5348..8528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons4
Model size1614
Cds size1614
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9321.17105.1prot_H-paniculata_contig9321.17105.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9321 5348..8528 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931160.7233984-CDS-H-paniculata_contig9321:5347..59831622931160.7233984-CDS-H-paniculata_contig9321:5347..5983Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9321 5348..5983 -
1691481617.810307-CDS-H-paniculata_contig9321:5347..59831691481617.810307-CDS-H-paniculata_contig9321:5347..5983Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9321 5348..5983 -
1622931160.734735-CDS-H-paniculata_contig9321:6516..67411622931160.734735-CDS-H-paniculata_contig9321:6516..6741Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9321 6517..6741 -
1691481617.8192096-CDS-H-paniculata_contig9321:6516..67411691481617.8192096-CDS-H-paniculata_contig9321:6516..6741Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9321 6517..6741 -
1622931160.7493737-CDS-H-paniculata_contig9321:7511..80351622931160.7493737-CDS-H-paniculata_contig9321:7511..8035Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9321 7512..8035 -
1691481617.8276527-CDS-H-paniculata_contig9321:7511..80351691481617.8276527-CDS-H-paniculata_contig9321:7511..8035Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9321 7512..8035 -
1622931160.7622535-CDS-H-paniculata_contig9321:8299..85281622931160.7622535-CDS-H-paniculata_contig9321:8299..8528Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9321 8300..8528 -
1691481617.8362536-CDS-H-paniculata_contig9321:8299..85281691481617.8362536-CDS-H-paniculata_contig9321:8299..8528Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9321 8300..8528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9321.17105.1

>prot_H-paniculata_contig9321.17105.1 ID=prot_H-paniculata_contig9321.17105.1|Name=mRNA_H-paniculata_contig9321.17105.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=538bp
MAILAAHRLAALQLAFTRGYEAHQQPQLASLAICNSCREAVPIKLTFTDD
MPLSLQALFFPSSATDQSNTTNATSCDGLSDGSALSATECFACTPKVSPD
PVSPKHPVSVSGKVSRCSRLAQYGRVSHVVWSGLTLFLEHIVMWPEGVDI
LSFPNEFEEPIEGVNWPSGLRELVLKEGFDQSIVNIDWPKCLERISLGLS
FNHPIEDARWPGALRYLNLGRSFNQPIERVVWPSGLREIRWGDAFDHPVE
QVTWPEELEGIDFGNSFGQPVERMMLPAGMVYLDFGDLFDHPVEGLNWPA
GVFALSFGREFDHPVADTVWPTALTEVSFGYKFNQSLVGVQWPSSLRRVA
LGFQFRQPLDNVQWPPDLQQLSLGETFNLPIDGMFWPPGLTQLDLGDEFN
QPLDNVAFPAGLETLYLSVFFDQPMDGVALPEALREIDFGLSFNRPVDGI
ALPRGLESMCFGRNFNQDVSRVQWPKGLLKVSFGRKFARTLEGMQWPPPN
LRLVELNSKYHALHPINPSILPDGCCVIYGHASSSDY*
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mRNA from alignment at H-paniculata_contig9321:5348..8528-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9321.17105.1 ID=mRNA_H-paniculata_contig9321.17105.1|Name=mRNA_H-paniculata_contig9321.17105.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3181bp|location=Sequence derived from alignment at H-paniculata_contig9321:5348..8528- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCATATTGGCGGCACACAGGTTAGCGGCACTACAGCTGGCTTTCAC
GCGCGGATATGAAGCACACCAACAACCCCAACTTGCATCTCTGGCTATAT
GTAACTCGTGCCGAGAGGCAGTCCCCATCAAGCTAACTTTCACAGACGAC
ATGCCGCTATCCCTTCAAGCCCTCTTCTTTCCTTCATCGGCTACCGATCA
ATCCAACACCACCAATGCGACCTCATGCGGTGTCACGGCCAGCAACCCTT
CAGCTTACGACAATCCTACGGCTGCGGGATCCGCGAGATATGCAACAGGT
TTGATACCGCCTTCCACAATTTCCATCGAGCCCGCTGGAATCCCCTCTTG
GGGCAGCCCGTCACTTGAAGAACATGCACACGCCTTCTCGGTGAACATGC
GCGAATCTCCCAAAGAGCGGGACAACATATTGGCATGCTGGACGAACGGT
GGTAACGGTGGTGGTGACCATGACTGTGGCGATTGCTTCACAGATGGGCT
AAGCGATGGTAGTGCCTTATCTGCAACCGAGTGCTTTGCGTGCACGCCGA
AAGTTTCACCAGACCCTGTCAGTCCCAAGCATCCGGTATCTGTAAGCGGA
AAGGTTTCACGCTGCTCACGGCTGGCACAGTACGGGAGGGTGTCTCACGT
GGTGTGGTCCGGACTAACGTTGTTTCTCGAACACATTGTGATGTGGCCTG
AAGGCGTGGACATTCTATCCTTTCCGAACGAGTTCGAGGAGCCGATTGAA
GGGGTTAATTGGCCTAGCGGGCTTCGGGAGCTGGTTTTGAAGGAAGGATT
TGATCAGTCCATAGTAAACATCGACTGGCCGAAGTGCTTGGAGAGGATCT
CTCTCGGGTTAAGCTTCAACCATCCCATTGAGGATGCTCGTTGGCCGGGA
GCGCTGAGGTATCTCAACCTGGGGCGGAGCTTCAACCAACCTATTGAAAG
GGTGGTATGGCCCTCGGGGTTGCGAGAGATCCGGTGGGGAGACGCGTTTG
ACCACCCCGTGGAGCAGGTGAATAAAATGACCATCGGCGGTCCGAGATGG
GCCGTATCGACGTGTGGTCTTATAACCAACTGCAGTCGGCAGTTAGGCTC
TTGATTATACGCGTATTTCAATAACTCGTTGTGTGTTTGGAACCATCAAT
TGGGAGGAGTTGCCATGTGCTGTGTACGATTTTAGTTCGGAGTGCGGGGG
TGTGTGGGGGGGTATATACATGTTTTTCACGTCGTCATTGTTAGAGCATT
GACCACTTTTCGTCGGGAGGAGGAAGCTTTAATTGGGACAGGGACAGGGG
GATGGGGAGGGGGGGTCATTTATATCTATACACTCATCAGCAACATTGGA
TCAAGAGGGGGGGCGGGGGGGGGCGCAAACAAGGGGTCATACGGTGCCAG
GACGCTTTTCACACCAACCAGCCATCGTGCCCAGTTACATCCGTCTCTGC
CTGTGAATCTATAATTTACTCCGGCGGAAATATGGTCTATTAATCTTGAG
GGTCGTACTCTTCAAGAATATACCCGCTTGGGGCTGGGTTAATATTTCAC
TCACTACTGTGGTACAGTAATCCAGCTTAAACACACTTCGGGTTAGTCAG
AACAGATGGAATCGGTCACGGGTTACCCCATCTTGCGCTTGTTGTGTTTA
CTTTTCGTGAGGGGACACCACTCACCAACAGAAAACGAGAGAACGAAAAA
GAACGAACTAACGAATGTTACCTCACTCACTCTGCGTTTCTTCTTCATGA
GCGTGCCTGCAACCTCGATATCTACCGCCCAATCAAGGTCACGTGGCCGG
AGGAGTTGGAAGGTATCGACTTCGGTAACTCCTTCGGTCAGCCAGTAGAA
AGGATGATGCTTCCTGCCGGCATGGTCTACTTGGACTTCGGCGATTTGTT
TGACCATCCTGTGGAGGGCCTCAATTGGCCTGCCGGTGTGTTTGCACTGT
CGTTCGGGCGTGAGTTCGATCACCCTGTGGCCGACACAGTCTGGCCGACA
GCGCTCACCGAGGTAGGAGTCAGGCCCATATTTAAATCATGCAGATGGAA
AGAGGACGTGCGGGGGGATTCAAGTGAGCCAGAGCATAGCTACTTATCTT
CTAGACAACGCATCGTGCTCGTGCGTTAAACAAAGGAAGTTGAACCTTCC
TAGAACGTCAAAGCGAGGTAAGTACCGTATTGTGATTGAGAAGTTCGTCC
CATGATCCGGTGTATTAGACGTTTCTTATGCTGCAATAGATGGTGGGCGA
GACCCCCCTCTCCGCGACCCCCATCTATTGTCTCCTATCGGTGGTGGACA
ACGAGACACGCAATGTGGACTTGCGCCCAGGCCTTTCAAATACTCCAACT
TCAGCGAGGGTAATAATGGAGGGCGAGCACTGTATGGCGACCCGACTAAA
TCATTATGGAATTATTACAGAGTTAAAATCTATTGTGCGTGTTGCTGTGT
TATATGTTTCAGAACGCCACAAATACCACTTTAATATGATTCGCACAAAA
ACGCCGTGTATGGCTTGCCTACAACAATACACGAATTGTGCGCAGGTTTC
TTTCGGCTACAAATTCAACCAAAGTTTGGTCGGAGTACAGTGGCCATCTT
CGTTACGACGCGTCGCCCTCGGCTTCCAATTTCGTCAACCATTGGACAAC
GTACAGTGGCCGCCGGACCTCCAACAGCTGTCCCTGGGAGAGACTTTCAA
CCTACCCATTGACGGGATGTTCTGGCCCCCAGGGCTGACCCAGCTCGACC
TCGGGGACGAGTTCAACCAACCTCTCGATAACGTGGCGTTTCCGGCCGGG
CTCGAAACGCTGTATTTGTCCGTGTTTTTCGATCAACCGATGGACGGAGT
TGCCCTACCGGAGGCGTTGCGAGAGATAGACTTCGGGCTCAGCTTCAACC
GACCCGTGGACGGCATAGCACTGCCGCGCGGTCTGGAATCAATGTGTTTT
GGTCGCAACTTCAATCAGGACGTTTCGCGTGTGCAATGGCCCAAAGGATT
GCTTAAGGTGTCATTTGGCCGCAAGTTTGCTAGAACATTGGAAGGTATGC
AGTGGCCGCCTCCCAACTTGCGGCTCGTGGAGCTTAACAGCAAGTACCAC
GCTCTGCATCCTATCAACCCAAGCATATTACCAGACGGTTGCTGCGTGAT
ATACGGGCATGCCTCAAGTTCGGACTACTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig9321:5348..8528-

>mRNA_H-paniculata_contig9321.17105.1 ID=mRNA_H-paniculata_contig9321.17105.1|Name=mRNA_H-paniculata_contig9321.17105.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3228bp|location=Sequence derived from alignment at H-paniculata_contig9321:5348..8528- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCATATTGGCGGCACACAGGTTAGCGGCACTACAGCTGGCTTTCAC
GCGCGGATATGAAGCACACCAACAACCCCAACTTGCATCTCTGGCTATAT
GTAACTCGTGCCGAGAGGCAGTCCCCATCAAGCTAACTTTCACAGACGAC
ATGCCGCTATCCCTTCAAGCCCTCTTCTTTCCTTCATCGGCTACCGATCA
ATCCAACACCACCAATGCGACCTCATGCGATGGCCATATTGGCGGCACAC
AGGTTAGCGGCACTACAGCTGGCTTTCACGCGCGGATATGAAGCACACCA
ACAACCCCAACTTGCATCTCTGGCTATATGTAACTCGTGCCGAGAGGCAG
TCCCCATCAAGCTAACTTTCACAGACGACATGCCGCTATCCCTTCAAGCC
CTCTTCTTTCCTTCATCGGCTACCGATCAATCCAACACCACCAATGCGAC
CTCATGCGATGGGCTAAGCGATGGTAGTGCCTTATCTGCAACCGAGTGCT
TTGCGTGCACGCCGAAAGTTTCACCAGACCCTGTCAGTCCCAAGCATCCG
GTATCTGTAAGCGGAAAGGTTTCACGCTGCTCACGGCTGGCACAGTACGG
GAGGGTGTCTCACGTGGTGTGGTCCGGACTAACGTTGTTTCTCGAACACA
TTGTGATGTGGCCTGAAGGCGTGGACATTCTATCCTTTCCGAACGAGTTC
GAGGAGCCGATTGAAGGGGTTAATTGGCCTAGCGGGCTTCGGGAGCTGGT
TTTGAAGGAAGGATTTGATCAGTCCATAGTAAACATCGACTGGCCGAAGT
GCTTGGAGAGGATCTCTCTCGGGTTAAGCTTCAACCATCCCATTGAGGAT
GCTCGTTGGCCGGGAGCGCTGAGGTATCTCAACCTGGGGCGGAGCTTCAA
CCAACCTATTGAAAGGGTGGTATGGCCCTCGGGGTTGCGAGAGATCCGGT
GGGGAGACGCGTTTGACCACCCCGTGGAGCAGATGGGCTAAGCGATGGTA
GTGCCTTATCTGCAACCGAGTGCTTTGCGTGCACGCCGAAAGTTTCACCA
GACCCTGTCAGTCCCAAGCATCCGGTATCTGTAAGCGGAAAGGTTTCACG
CTGCTCACGGCTGGCACAGTACGGGAGGGTGTCTCACGTGGTGTGGTCCG
GACTAACGTTGTTTCTCGAACACATTGTGATGTGGCCTGAAGGCGTGGAC
ATTCTATCCTTTCCGAACGAGTTCGAGGAGCCGATTGAAGGGGTTAATTG
GCCTAGCGGGCTTCGGGAGCTGGTTTTGAAGGAAGGATTTGATCAGTCCA
TAGTAAACATCGACTGGCCGAAGTGCTTGGAGAGGATCTCTCTCGGGTTA
AGCTTCAACCATCCCATTGAGGATGCTCGTTGGCCGGGAGCGCTGAGGTA
TCTCAACCTGGGGCGGAGCTTCAACCAACCTATTGAAAGGGTGGTATGGC
CCTCGGGGTTGCGAGAGATCCGGTGGGGAGACGCGTTTGACCACCCCGTG
GAGCAGGTCACGTGGCCGGAGGAGTTGGAAGGTATCGACTTCGGTAACTC
CTTCGGTCAGCCAGTAGAAAGGATGATGCTTCCTGCCGGCATGGTCTACT
TGGACTTCGGCGATTTGTTTGACCATCCTGTGGAGGGCCTCAATTGGCCT
GCCGGTGTGTTTGCACTGTCGTTCGGGCGTGAGTTCGATCACCCTGTGGC
CGACACAGTCTGGCCGACAGCGCTCACCGAGGTCACGTGGCCGGAGGAGT
TGGAAGGTATCGACTTCGGTAACTCCTTCGGTCAGCCAGTAGAAAGGATG
ATGCTTCCTGCCGGCATGGTCTACTTGGACTTCGGCGATTTGTTTGACCA
TCCTGTGGAGGGCCTCAATTGGCCTGCCGGTGTGTTTGCACTGTCGTTCG
GGCGTGAGTTCGATCACCCTGTGGCCGACACAGTCTGGCCGACAGCGCTC
ACCGAGGTTTCTTTCGGCTACAAATTCAACCAAAGTTTGGTCGGAGTACA
GTGGCCATCTTCGTTACGACGCGTCGCCCTCGGCTTCCAATTTCGTCAAC
CATTGGACAACGTACAGTGGCCGCCGGACCTCCAACAGCTGTCCCTGGGA
GAGACTTTCAACCTACCCATTGACGGGATGTTCTGGCCCCCAGGGCTGAC
CCAGCTCGACCTCGGGGACGAGTTCAACCAACCTCTCGATAACGTGGCGT
TTCCGGCCGGGCTCGAAACGCTGTATTTGTCCGTGTTTTTCGATCAACCG
ATGGACGGAGTTGCCCTACCGGAGGCGTTGCGAGAGATAGACTTCGGGCT
CAGCTTCAACCGACCCGTGGACGGCATAGCACTGCCGCGCGGTCTGGAAT
CAATGTGTTTTGGTCGCAACTTCAATCAGGACGTTTCGCGTGTGCAATGG
CCCAAAGGATTGCTTAAGGTGTCATTTGGCCGCAAGTTTGCTAGAACATT
GGAAGGTATGCAGTGGCCGCCTCCCAACTTGCGGCTCGTGGAGCTTAACA
GCAAGTACCACGCTCTGCATCCTATCAACCCAAGCATATTACCAGACGGT
TGCTGCGTGATATACGGGCATGCCTCAAGTTCGGACTACTGAGTTTCTTT
CGGCTACAAATTCAACCAAAGTTTGGTCGGAGTACAGTGGCCATCTTCGT
TACGACGCGTCGCCCTCGGCTTCCAATTTCGTCAACCATTGGACAACGTA
CAGTGGCCGCCGGACCTCCAACAGCTGTCCCTGGGAGAGACTTTCAACCT
ACCCATTGACGGGATGTTCTGGCCCCCAGGGCTGACCCAGCTCGACCTCG
GGGACGAGTTCAACCAACCTCTCGATAACGTGGCGTTTCCGGCCGGGCTC
GAAACGCTGTATTTGTCCGTGTTTTTCGATCAACCGATGGACGGAGTTGC
CCTACCGGAGGCGTTGCGAGAGATAGACTTCGGGCTCAGCTTCAACCGAC
CCGTGGACGGCATAGCACTGCCGCGCGGTCTGGAATCAATGTGTTTTGGT
CGCAACTTCAATCAGGACGTTTCGCGTGTGCAATGGCCCAAAGGATTGCT
TAAGGTGTCATTTGGCCGCAAGTTTGCTAGAACATTGGAAGGTATGCAGT
GGCCGCCTCCCAACTTGCGGCTCGTGGAGCTTAACAGCAAGTACCACGCT
CTGCATCCTATCAACCCAAGCATATTACCAGACGGTTGCTGCGTGATATA
CGGGCATGCCTCAAGTTCGGACTACTGA
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