mRNA_H-paniculata_contig1272.1710.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1272.1710.1 vs. uniprot
Match: D7FYW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYW1_ECTSI) HSP 1 Score: 365 bits (938), Expect = 2.110e-111 Identity = 310/784 (39.54%), Postives = 412/784 (52.55%), Query Frame = 1
Query: 391 MRVVADAAHTAREEARAALDSMDGFAALNRKLIEELRAVVRIRDDLLEDLCRERRCREELEGEVNQLLGGGLAAAFKEKEDELEASERCERERKETKRITALHTRMEDEYRLTLMSLGRDRERLEGVVASLKGYLVDARHDREVRAKEEEERANMNAEEVASIRAGFAPRPKRRVGGDGHRGVSSTGATASRATGSRPRRKEIGWL-EVQRRRXXXXXXXXXXVAIAVAEGRSNAKRIKSQPT--SSPDHG---GHNTAVSGG-----ALIQKDHNAHSNGDHLSHHGGGGVSXXXXXXXXXXXXXXXXXXXXTASVIVQRVAVEIIEMFVGDFVPTPRPPPP--EEWVASDVASGGNGGQNTV--------KAVSKPSKWAAIGRAGKLSTRAAAVCAQEAQIAAETEAHNLLRATIKSAARALSTAFFSILENVAAFAA---------------------NLHVSA-----AEATIPGVAVRRLVQICGMLRSTAGGPTLGHVDVELQKNPMGRG--RVGHREFFMVILSLAELRFAGEPRDDALEKLSRMLKQHSPRQIPPSAQHERPKTVLALKKHAAGSGPNAPTADGGSAGEFLSAECLMGAERVLERDRRALEAIFYHYTGAYSAAPDVGGSRTRPLLRFVALAAFCKDFELTPGLVSREDAHRIYAQLAYPHETMLTPRAVASREGSCRSNTSGTMAMGSGTGPMAAAGLGLNLRQWMAWLGLAAVGCPWFETQRGLYNSSTKKMLGLLQWMEGSAGKSRISARRGAGILPAFNLL 2595
M V+ADA AREEA++ALD+++ FAALNRKL++ELR V RD+LL DL ER RE+LE ++ +LLG GL A FK +E++L+A C+RE+ E+ R+ +H RME+EYR+ L S GR+R RL+ V+SL+ L+ R + + A+E ERA M +EE+ S+RAGF RP++R G D H V + A S GS + GWL +VQ+R A V GR + PT ++PD G GH S G A++ A + GG XXXXX XXXXXXXXX A V AVE +E+F+GDFVP R P +++ + G+G + V V K SKWAAIGR GK+S RAAAVC +EA AA+ E + LR+ I +AAR LS ++FS+L + AA N++ +A +AT+P +AVRRLVQ CG+LR+ GGPTL H D+ELQ+N RG VGHRE+F +I++L++ RF G+ +D ALE+LSRML+ Q + P+T + AG G + P A+ ++ A V +R P R A A P +R G G G +AAAGLGL+ QWMAWLGL AVGC WF+ QRGLYN+ TKK+LGLLQWMEGS GK RISA+RG +PAFNLL
Sbjct: 1 MAVIADATEKAREEAQSALDTVEAFAALNRKLVDELRTTVCARDELLGDLRNERGIREQLEHDIEELLGSGLVAEFKLREEDLKAQ--CKREQGESARVAKVHARMEEEYRIALDSSGRERARLQETVSSLEETLLSDRREHAISAREFSERATMGSEEMRSLRAGFLTRPRQR-GYDRHT-VRPSAAKLSGQGGSGGQGDVSGWLFDVQQRMD----------AQKVGAGRG----VVRHPTKKTAPDGGRGVGHQNTGSDGNLSSAAVVPPTGGAKRQFTQPTSCGG---XXXXXXDGSSIGXXXXXXXXXNAGQAVHAAAVENVELFLGDFVPEVRAQPQAASALLSASANASGSGAEGKVGGEEHDGSAVVKKGSKWAAIGRGGKISARAAAVCLEEANKAAQAETLHRLRSMINAAARTLSASWFSLLATATSAAATHGGHVGHGTGGGRGEGTAVENINSAADRPASTDATVPAIAVRRLVQSCGILRNAGGGPTLAHADMELQRNTASRGGRSVGHREYFKIIMALSQYRFVGDAKDHALEQLSRMLR---------PVQRDSPRTPPHAQGRQAGVGSDVP-------------------------------ALLDLWSAALFGLGSVLQAREEPPGRRSAAA---------PATAARNQ-------------------------------------FGEG-GVVAAAGLGLD--QWMAWLGLVAVGCSWFDKQRGLYNTPTKKVLGLLQWMEGSVGKKRISAKRGGAFVPAFNLL 674 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1272.1710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1272.1710.1 >prot_H-paniculata_contig1272.1710.1 ID=prot_H-paniculata_contig1272.1710.1|Name=mRNA_H-paniculata_contig1272.1710.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=865bp DKIINVDKLKALLRREREHRAREREGREVAEREAKIALDSLEVKARRTLEback to top mRNA from alignment at H-paniculata_contig1272:4357..14170- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1272.1710.1 ID=mRNA_H-paniculata_contig1272.1710.1|Name=mRNA_H-paniculata_contig1272.1710.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9814bp|location=Sequence derived from alignment at H-paniculata_contig1272:4357..14170- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1272:4357..14170- >mRNA_H-paniculata_contig1272.1710.1 ID=mRNA_H-paniculata_contig1272.1710.1|Name=mRNA_H-paniculata_contig1272.1710.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5190bp|location=Sequence derived from alignment at H-paniculata_contig1272:4357..14170- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |