mRNA_H-paniculata_contig1272.1709.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig1272.1709.1 vs. uniprot
Match: D7FYW2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYW2_ECTSI) HSP 1 Score: 202 bits (515), Expect = 4.040e-61 Identity = 117/226 (51.77%), Postives = 154/226 (68.14%), Query Frame = 3
Query: 105 FVPITGRWH--STSASCCPSRSYCSTGRGVARPSMMAGFGGNTSKKPKEKPALVGAGKGQKVYERQMRSFTGLAGAGADVVDVYVYEQNSDDDKFVFAGKVAWSSEVTMEQALQWHRDLIVNHVKLLEP--KIKP-PLRIFTAPGNSEVEVARNIHDLKWVLG-GKGS-VSVEGVKNAQVGYKPELYEPGDKYFYVRRLPDGKSPEPPAEIMVESLDKMVNAGVIP 761
F P+T W TS++ S +R MM GFGG P++K +VG G+GQ Y+RQ++S+ GL AGA+ DVYV+ + DDKF+F GK AWSS +T++QALQ+ R LI+ HV+LLEP K KP P+RIFTAP NSE+EVARNIHDL VLG GKG V V+ + +VG +PELYE G+ YFYVR+L DGK P PP+E+M+E++D +V GV+P
Sbjct: 22 FAPLTAGWQLRQTSSAWHMIPSGRPRSATSSRVMMMGGFGG-----PEKKKKVVGVGRGQDAYQRQVKSYHGLTEAGAEGADVYVHREG--DDKFIFMGKAAWSSGITVQQALQFQRGLILGHVELLEPMWKDKPAPMRIFTAPINSEIEVARNIHDLVRVLGPGKGKDVKVDKLTPQEVGLRPELYELGEPYFYVRKLDDGKCPAPPSEVMIETMDNLVAKGVVP 240
BLAST of mRNA_H-paniculata_contig1272.1709.1 vs. uniprot
Match: A0A7S2A9K5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A9K5_TRICV) HSP 1 Score: 66.6 bits (161), Expect = 4.380e-9 Identity = 49/141 (34.75%), Postives = 76/141 (53.90%), Query Frame = 3
Query: 291 RQMRSFTGLAGAGADVVDVYVYEQNSDDDKFVFAGKVAWSSEVTMEQALQWHRDLIVNHVKLLE-----PKIKPPLRIFTAPGNSEVEVARNIHDLKWVLGGKGSVSVEG---VKNAQVGYKPELYEPGDKYFYVRRLPDG 689
RQ +F + AG + VY ++ D F F GK A S+V++ A+ LI H L PK + + ++TAPG+SE++VA N +LK+V + VEG VK+A+VG++ E+Y+ G++ F R DG
Sbjct: 119 RQNNNFVAIREAGGPELTNDVYARDPSTDVFFFVGKCARVSDVSVRAAVARQWPLIEEHACRLRRFELFPK-RGTVELWTAPGDSELDVAYNRPELKFVKMDRTD-DVEGARDVKSAEVGFQGEIYDQGEEGFRTWRTEDG 257
BLAST of mRNA_H-paniculata_contig1272.1709.1 vs. uniprot
Match: A0A7S2EHA8_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EHA8_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 2.930e-8 Identity = 42/146 (28.77%), Postives = 75/146 (51.37%), Query Frame = 3
Query: 291 RQMRSFTGLAGAGADVVDVYVYEQNSDDDKFVFAGKVAWSSEVTMEQALQWHRDLIVNHVKLLEP------KIKPPLRIFTAPGNSEVEVARNIHDLKWVLGGKGSV--SVEGVKNAQVGYKPELYEPGDKYFYVRRLPDGKSPEP 704
RQ + F + A + VY ++ + F F GK+A S+V++EQA+ LI H + L P K + L+I+TAPG+SE++VA N + ++ + E ++ ++G++ E+Y+ ++ F R DG+ P
Sbjct: 89 RQSQHFVAIREAAGSQLTNDVYVRDVETSTFWFVGKIARISDVSLEQAVARQWPLIEQHARRLRPIELYSKKGRDALQIWTAPGDSELDVAYNRPNTQFQKMKRADEIPGAEKIRAIEIGFQGEMYQQNEEGFRTVRTEDGRPANP 234
BLAST of mRNA_H-paniculata_contig1272.1709.1 vs. uniprot
Match: A0A7S4ENJ4_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ENJ4_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 1.130e-5 Identity = 36/110 (32.73%), Postives = 60/110 (54.55%), Query Frame = 3
Query: 387 FAGKVAWSSEVTMEQALQWHRDLIVNHVKLLEP----KIKPPLRIFTAPGNSEVEVARNIHDLKWVLGGKGSVSVEGVKNAQVGYKPELYEPGDKYFYVRRLPDGKSPEP 704
+ GKVA SEV++E + ++I H L P + L ++TAPG++E+EVA N +L V K +V + ++N +G++ E+Y+ G++ F R DG P
Sbjct: 148 YVGKVAKVSEVSLEDCIARQWNVIETHAANLRPIELYGHRGNLELWTAPGDTELEVAYNRPELVMVKMEKYAVDSKDLRNNLIGFQGEVYQEGEEGFRSWRNEDGSPARP 257
BLAST of mRNA_H-paniculata_contig1272.1709.1 vs. uniprot
Match: A0A7S2U4N4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U4N4_9STRA) HSP 1 Score: 55.1 bits (131), Expect = 3.880e-5 Identity = 46/149 (30.87%), Postives = 74/149 (49.66%), Query Frame = 3
Query: 330 ADVVDVYVYEQNSDDDKFVFAGKVAWSSEVTMEQ----ALQWHRDLIVNHVKLL----EPKIKPP---------LRIFTAPGNSEVEVARNIHDLKWVLGGKGSVSVEGVKNAQVGYKPELY---EPGDKYFYVRRLPDGKSPEPPAEI 716
A DVYV +D KF F GKV ++ E+ ++ + +++ +L+ + K++P L I+TAPG+SE++V +N+ L ++G G +S E A VGY PE+Y E D V R +GK +P +I
Sbjct: 158 ASTSDVYVKAPLNDPKKFWFVGKVNRRLDIDDEELVGLSVPTEAEAVLSQKRLILEYSKTKLRPQNLGGPFAKDLEIWTAPGDSEMDVVKNLITLVKIVGSMGDIS-ETFAVADVGYNPEIYIGDEVRDGGLRVVRDEEGKPVKPVFDI 305
BLAST of mRNA_H-paniculata_contig1272.1709.1 vs. uniprot
Match: A0A448ZK73_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZK73_9STRA) HSP 1 Score: 54.7 bits (130), Expect = 4.530e-5 Identity = 34/110 (30.91%), Postives = 60/110 (54.55%), Query Frame = 3
Query: 387 FAGKVAWSSEVTMEQALQWHRDLIVNHVKLLEP-KIKPP---LRIFTAPGNSEVEVARNIHDLKWVLGGKGSVSVEGVKNAQVGYKPELYEPGDKYFYVRRLPDGKSPEP 704
+ GKVA ++V++E + ++I H L P ++ P L I+TAPG++E++VA N +L K V + ++N +G++ E+Y+ G++ F R DG P
Sbjct: 129 YVGKVAKITDVSLEDCIARQWNIIETHAANLRPIELYPQRGNLEIWTAPGDTELDVAYNRPELVMARMEKYEVLAKDLRNNLIGFQGEVYQEGEEGFRTWRKEDGSPARP 238
BLAST of mRNA_H-paniculata_contig1272.1709.1 vs. uniprot
Match: A0A7S4MZ33_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MZ33_9STRA) HSP 1 Score: 53.5 bits (127), Expect = 7.930e-5 Identity = 34/82 (41.46%), Postives = 47/82 (57.32%), Query Frame = 3
Query: 318 AGAGADVVDVYVYEQNSDDDKFVFAGKVAWSSEVTMEQALQWHRDLIVNHVKLLEP----KIKPPLRIFTAPGNSEVEVARN 551
AG DVYV + ++D D F FAGKVA S+V E A+ +LI H L P + + L ++TAPG+SE++VA N
Sbjct: 131 AGGPELTYDVYVRDPSNDADVFWFAGKVAAVSDVNAELAVARQWNLIEEHACRLRPLDLRRARGSLELWTAPGDSEMDVAYN 212 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1272.1709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1272.1709.1 >prot_H-paniculata_contig1272.1709.1 ID=prot_H-paniculata_contig1272.1709.1|Name=mRNA_H-paniculata_contig1272.1709.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=247bp MELGLMLKAVLLLGVSFKLADSFFVPITGRWHSTSASCCPSRSYCSTGRGback to top mRNA from alignment at H-paniculata_contig1272:1057..3976+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1272.1709.1 ID=mRNA_H-paniculata_contig1272.1709.1|Name=mRNA_H-paniculata_contig1272.1709.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2920bp|location=Sequence derived from alignment at H-paniculata_contig1272:1057..3976+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1272:1057..3976+ >mRNA_H-paniculata_contig1272.1709.1 ID=mRNA_H-paniculata_contig1272.1709.1|Name=mRNA_H-paniculata_contig1272.1709.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1482bp|location=Sequence derived from alignment at H-paniculata_contig1272:1057..3976+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |