prot_H-paniculata_contig929.17073.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig929.17073.1
Unique Name	prot_H-paniculata_contig929.17073.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	125

Homology

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BLAST of mRNA_H-paniculata_contig929.17073.1 vs. uniprot
Match: A0A6H5JCR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCR2_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 1.130e-53
Identity = 94/112 (83.93%), Postives = 101/112 (90.18%), Query Frame = 0

Query:    6 QEVFSPYGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKKGMANADVEAGHRMTIGWGKPINKLVNAVGVETKIDSEP-PPPDVLDPGLPETLQKLTPEAKASLQK 116
            QE FSP+GKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAK+ M + D E GHRM+IGWGKPINKL NAVGVETKI+ +  PPPDVLDPGLPE+LQ LTPEAKASLQK
Sbjct:  159 QEAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKRAMMDTDFE-GHRMSIGWGKPINKLANAVGVETKIEGDDAPPPDVLDPGLPESLQNLTPEAKASLQK 269

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BLAST of mRNA_H-paniculata_contig929.17073.1 vs. uniprot
Match: D7FSA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA5_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 7.200e-53
Identity = 92/112 (82.14%), Postives = 101/112 (90.18%), Query Frame = 0

Query:    6 QEVFSPYGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKKGMANADVEAGHRMTIGWGKPINKLVNAVGVETKIDS-EPPPPDVLDPGLPETLQKLTPEAKASLQK 116
            QE FSP+GKVYSIKIMWPRTDEERARKRNCGF+SFWR+EDAVNAK+ M + D E GHRM+IGWGKPINKL NAVGVETKI+  + PPPDVLDPGLPE+LQ LTPEAKASLQK
Sbjct:  255 QEAFSPFGKVYSIKIMWPRTDEERARKRNCGFLSFWRKEDAVNAKRAMMDTDFE-GHRMSIGWGKPINKLANAVGVETKIEGHDAPPPDVLDPGLPESLQNLTPEAKASLQK 365

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BLAST of mRNA_H-paniculata_contig929.17073.1 vs. uniprot
Match: A0A836CAC0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAC0_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.110e-27
Identity = 54/84 (64.29%), Postives = 66/84 (78.57%), Query Frame = 0

Query:    7 EVFSPYGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKKGMANADVEAGHRMTIGWGKPINKLVNAVGVETKIDSEPP 90
            E+FS +G++YSIKIMWPRTDEERAR+RNCGFVSFWRR DA  A++ M   DVE G  + IGWGKPI+KL  ++G ETK+   PP
Sbjct:  191 EIFSAFGEIYSIKIMWPRTDEERARRRNCGFVSFWRRGDAEAAREAMQGKDVE-GMSIQIGWGKPISKLERSIGEETKVSDLPP 273

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BLAST of mRNA_H-paniculata_contig929.17073.1 vs. uniprot
Match: A0A7S2DH44_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DH44_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 5.950e-23
Identity = 45/72 (62.50%), Postives = 60/72 (83.33%), Query Frame = 0

Query:    7 EVFSPYGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKKGMANADVEAGHRMTIGWGKPINKLVNA 78
            E+FS +G++YS+KIMWPRT+EERAR+RNCGFVSF +R DA +AK  M + ++E G+R++IGWGK I KL NA
Sbjct:  107 ELFSRFGQIYSVKIMWPRTEEERARRRNCGFVSFMQRPDADDAKTTMHDGEIE-GYRISIGWGKAIKKLGNA 177

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BLAST of mRNA_H-paniculata_contig929.17073.1 vs. uniprot
Match: A0A7S2WJA8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJA8_9STRA)

HSP 1 Score: 100 bits (250), Expect = 2.700e-22
Identity = 53/112 (47.32%), Postives = 71/112 (63.39%), Query Frame = 0

Query:    7 EVFSPYGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKKGMANADVEAGHRMTIGWGKPINKLVNAVGVETKIDSEPPPPDVLDPGLPETLQ-KLTPEAKASLQKA 117
            ++F  YG++YS+KIMWPRT+EERARKRNCGFVSF +REDA  AK  +   +++ GHR+++GWGK I KL  +           P    L PGLP+ +  KL    KA+   A
Sbjct:  231 DIFGKYGEIYSVKIMWPRTEEERARKRNCGFVSFMQREDAEAAKAALNEIELD-GHRISVGWGKAIKKLSGSTNSVAAGGFLKPKASALPPGLPKDMHAKLETVYKAASSAA 341

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BLAST of mRNA_H-paniculata_contig929.17073.1 vs. uniprot
Match: A0A7S2WJ81_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJ81_9STRA)

HSP 1 Score: 100 bits (250), Expect = 2.760e-22
Identity = 53/112 (47.32%), Postives = 71/112 (63.39%), Query Frame = 0

Query:    7 EVFSPYGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKKGMANADVEAGHRMTIGWGKPINKLVNAVGVETKIDSEPPPPDVLDPGLPETLQ-KLTPEAKASLQKA 117
            ++F  YG++YS+KIMWPRT+EERARKRNCGFVSF +REDA  AK  +   +++ GHR+++GWGK I KL  +           P    L PGLP+ +  KL    KA+   A
Sbjct:  231 DIFGKYGEIYSVKIMWPRTEEERARKRNCGFVSFMQREDAEAAKAALNEIELD-GHRISVGWGKAIKKLSGSTNSVAAGGFLKPKASALPPGLPKDMHAKLETVYKAASSAA 341

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BLAST of mRNA_H-paniculata_contig929.17073.1 vs. uniprot
Match: A0A7S3UX26_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX26_HETAK)

HSP 1 Score: 99.4 bits (246), Expect = 8.410e-22
Identity = 44/71 (61.97%), Postives = 58/71 (81.69%), Query Frame = 0

Query:    7 EVFSPYGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKKGMANADVEAGHRMTIGWGKPINKLVN 77
            ++FS YG++YS+KIMWPRT+EER RKRNCGFVS+ RR DA +AK  M + D+E G+R+++GWGK I KL N
Sbjct:   30 DIFSAYGEIYSVKIMWPRTEEERQRKRNCGFVSYMRRADAEDAKMAMHDQDLE-GYRISVGWGKAIKKLAN 99

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BLAST of mRNA_H-paniculata_contig929.17073.1 vs. uniprot
Match: A0A7R9BFQ8_9CRUS (Hypothetical protein n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9BFQ8_9CRUS)

HSP 1 Score: 87.8 bits (216), Expect = 1.050e-17
Identity = 49/116 (42.24%), Postives = 72/116 (62.07%), Query Frame = 0

Query:    7 EVFSPYGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKKGMANADVEAGHRMTIGWGKPINKLVNAVGVETKID--SEPPPPDVLDPGLPETLQKLTPEAKASLQKASIE 120
            EVF  YG + S+KIMWPRTDEER R +NCGFV+F  R+DA  A K ++  D+  G  M +GWGK + K ++ V V  ++   + PPPP     GLP   Q L+ + +  L+++ ++
Sbjct:  203 EVFGKYGPLASVKIMWPRTDEERQRGKNCGFVAFMTRKDAERAMKFVSGTDL-MGFEMKLGWGKAVPKPMHPVYVPPQLLELTMPPPPS----GLPFNAQPLSKDKEWVLERSMVK 313

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BLAST of mRNA_H-paniculata_contig929.17073.1 vs. uniprot
Match: G5AB50_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AB50_PHYSP)

HSP 1 Score: 87.4 bits (215), Expect = 1.420e-17
Identity = 46/100 (46.00%), Postives = 62/100 (62.00%), Query Frame = 0

Query:    5 TQEV----FSPYGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKKGMANADVEAGHRMTIGWGKPINKLVNAVGVETKIDSEPPPPDVLDPGLP 100
            T+EV    F  YG VYS+KIMWPR++EERAR+RNCGFVSF+ R DA +A+  + N ++E G  + +GWGK +     A      + S   PP V  P +P
Sbjct:  222 TEEVLEKEFGRYGDVYSVKIMWPRSEEERARRRNCGFVSFYERRDADDARVNLDNKELE-GQPIIVGWGKAVKIQPRARAPGVLLPSPVTPPSVTTPTIP 320

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BLAST of mRNA_H-paniculata_contig929.17073.1 vs. uniprot
Match: A0A225VBK9_9STRA (U2-associated splicing factor n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VBK9_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 4.930e-17
Identity = 39/67 (58.21%), Postives = 52/67 (77.61%), Query Frame = 0

Query:    6 QEVFSPYGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKKGMANADVEAGHRMTIGWGKPI 72
            Q  F  YG+VYS+KIMWPR++EERARKRNCGFVSF++R DA +A+  + N ++E G  M +GWGK +
Sbjct:  221 QTEFGRYGEVYSVKIMWPRSEEERARKRNCGFVSFYQRRDADDARINLDNKELE-GQPMIVGWGKAV 286

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig929.17073.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig929.17073.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JCR2_9PHAE	1.130e-53	83.93	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FSA5_ECTSI	7.200e-53	82.14	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A836CAC0_9STRA	1.110e-27	64.29	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S2DH44_9STRA	5.950e-23	62.50	Hypothetical protein (Fragment) n=1 Tax=Dictyocha ...	[more]
A0A7S2WJA8_9STRA	2.700e-22	47.32	Hypothetical protein (Fragment) n=1 Tax=Rhizochrom...	[more]
A0A7S2WJ81_9STRA	2.760e-22	47.32	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A7S3UX26_HETAK	8.410e-22	61.97	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A7R9BFQ8_9CRUS	1.050e-17	42.24	Hypothetical protein n=1 Tax=Notodromas monacha Ta...	[more]
G5AB50_PHYSP	1.420e-17	46.00	Uncharacterized protein n=1 Tax=Phytophthora sojae...	[more]
A0A225VBK9_9STRA	4.930e-17	58.21	U2-associated splicing factor n=1 Tax=Phytophthora...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 7..57 e-value: 8.8E-7 score: 28.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 1..71 score: 9.951
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 3..77 e-value: 6.3E-11 score: 44.3
None	No IPR available	PANTHER	PTHR23140:SF0	SWAP/SURP DOMAIN-CONTAINING PROTEIN	coord: 6..92
None	No IPR available	PANTHER	PTHR23140	RNA PROCESSING PROTEIN LD23810P	coord: 6..92
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 7..73

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig929	contig	H-paniculata_contig929:29711..30381 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig929.17073.1	mRNA_H-paniculata_contig929.17073.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig929 29711..30381 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig929.17073.1 ID=prot_H-paniculata_contig929.17073.1|Name=mRNA_H-paniculata_contig929.17073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
MLHSTQEVFSPYGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAK
KGMANADVEAGHRMTIGWGKPINKLVNAVGVETKIDSEPPPPDVLDPGLP
ETLQKLTPEAKASLQKASIENCRA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf