mRNA_H-paniculata_contig929.17073.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig929.17073.1
Unique NamemRNA_H-paniculata_contig929.17073.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig929.17073.1 vs. uniprot
Match: A0A6H5JCR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCR2_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 1.130e-53
Identity = 94/112 (83.93%), Postives = 101/112 (90.18%), Query Frame = 1 
Query:   16 QEVFSPYGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKKGMANADVEAGHRMTIGWGKPINKLVNAVGVETKIDSEP-PPPDVLDPGLPETLQKLTPEAKASLQK 348
            QE FSP+GKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAK+ M + D E GHRM+IGWGKPINKL NAVGVETKI+ +  PPPDVLDPGLPE+LQ LTPEAKASLQK
Sbjct:  159 QEAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKRAMMDTDFE-GHRMSIGWGKPINKLANAVGVETKIEGDDAPPPDVLDPGLPESLQNLTPEAKASLQK 269
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BLAST of mRNA_H-paniculata_contig929.17073.1 vs. uniprot
Match: D7FSA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA5_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 7.200e-53
Identity = 92/112 (82.14%), Postives = 101/112 (90.18%), Query Frame = 1 
Query:   16 QEVFSPYGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKKGMANADVEAGHRMTIGWGKPINKLVNAVGVETKIDS-EPPPPDVLDPGLPETLQKLTPEAKASLQK 348
            QE FSP+GKVYSIKIMWPRTDEERARKRNCGF+SFWR+EDAVNAK+ M + D E GHRM+IGWGKPINKL NAVGVETKI+  + PPPDVLDPGLPE+LQ LTPEAKASLQK
Sbjct:  255 QEAFSPFGKVYSIKIMWPRTDEERARKRNCGFLSFWRKEDAVNAKRAMMDTDFE-GHRMSIGWGKPINKLANAVGVETKIEGHDAPPPDVLDPGLPESLQNLTPEAKASLQK 365
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BLAST of mRNA_H-paniculata_contig929.17073.1 vs. uniprot
Match: A0A836CAC0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAC0_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.110e-27
Identity = 54/84 (64.29%), Postives = 66/84 (78.57%), Query Frame = 1 
Query:   19 EVFSPYGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKKGMANADVEAGHRMTIGWGKPINKLVNAVGVETKIDSEPP 270
            E+FS +G++YSIKIMWPRTDEERAR+RNCGFVSFWRR DA  A++ M   DVE G  + IGWGKPI+KL  ++G ETK+   PP
Sbjct:  191 EIFSAFGEIYSIKIMWPRTDEERARRRNCGFVSFWRRGDAEAAREAMQGKDVE-GMSIQIGWGKPISKLERSIGEETKVSDLPP 273
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BLAST of mRNA_H-paniculata_contig929.17073.1 vs. uniprot
Match: A0A7S2DH44_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DH44_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 5.950e-23
Identity = 45/72 (62.50%), Postives = 60/72 (83.33%), Query Frame = 1 
Query:   19 EVFSPYGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKKGMANADVEAGHRMTIGWGKPINKLVNA 234
            E+FS +G++YS+KIMWPRT+EERAR+RNCGFVSF +R DA +AK  M + ++E G+R++IGWGK I KL NA
Sbjct:  107 ELFSRFGQIYSVKIMWPRTEEERARRRNCGFVSFMQRPDADDAKTTMHDGEIE-GYRISIGWGKAIKKLGNA 177
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BLAST of mRNA_H-paniculata_contig929.17073.1 vs. uniprot
Match: A0A7S2WJA8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJA8_9STRA)

HSP 1 Score: 100 bits (250), Expect = 2.700e-22
Identity = 53/112 (47.32%), Postives = 71/112 (63.39%), Query Frame = 1 
Query:   19 EVFSPYGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKKGMANADVEAGHRMTIGWGKPINKLVNAVGVETKIDSEPPPPDVLDPGLPETLQ-KLTPEAKASLQKA 351
            ++F  YG++YS+KIMWPRT+EERARKRNCGFVSF +REDA  AK  +   +++ GHR+++GWGK I KL  +           P    L PGLP+ +  KL    KA+   A
Sbjct:  231 DIFGKYGEIYSVKIMWPRTEEERARKRNCGFVSFMQREDAEAAKAALNEIELD-GHRISVGWGKAIKKLSGSTNSVAAGGFLKPKASALPPGLPKDMHAKLETVYKAASSAA 341
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BLAST of mRNA_H-paniculata_contig929.17073.1 vs. uniprot
Match: A0A7S2WJ81_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJ81_9STRA)

HSP 1 Score: 100 bits (250), Expect = 2.760e-22
Identity = 53/112 (47.32%), Postives = 71/112 (63.39%), Query Frame = 1 
Query:   19 EVFSPYGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKKGMANADVEAGHRMTIGWGKPINKLVNAVGVETKIDSEPPPPDVLDPGLPETLQ-KLTPEAKASLQKA 351
            ++F  YG++YS+KIMWPRT+EERARKRNCGFVSF +REDA  AK  +   +++ GHR+++GWGK I KL  +           P    L PGLP+ +  KL    KA+   A
Sbjct:  231 DIFGKYGEIYSVKIMWPRTEEERARKRNCGFVSFMQREDAEAAKAALNEIELD-GHRISVGWGKAIKKLSGSTNSVAAGGFLKPKASALPPGLPKDMHAKLETVYKAASSAA 341
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BLAST of mRNA_H-paniculata_contig929.17073.1 vs. uniprot
Match: A0A7S3UX26_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX26_HETAK)

HSP 1 Score: 99.4 bits (246), Expect = 8.410e-22
Identity = 44/71 (61.97%), Postives = 58/71 (81.69%), Query Frame = 1 
Query:   19 EVFSPYGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKKGMANADVEAGHRMTIGWGKPINKLVN 231
            ++FS YG++YS+KIMWPRT+EER RKRNCGFVS+ RR DA +AK  M + D+E G+R+++GWGK I KL N
Sbjct:   30 DIFSAYGEIYSVKIMWPRTEEERQRKRNCGFVSYMRRADAEDAKMAMHDQDLE-GYRISVGWGKAIKKLAN 99
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BLAST of mRNA_H-paniculata_contig929.17073.1 vs. uniprot
Match: A0A7R9BFQ8_9CRUS (Hypothetical protein n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9BFQ8_9CRUS)

HSP 1 Score: 87.8 bits (216), Expect = 1.050e-17
Identity = 49/116 (42.24%), Postives = 72/116 (62.07%), Query Frame = 1 
Query:   19 EVFSPYGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKKGMANADVEAGHRMTIGWGKPINKLVNAVGVETKID--SEPPPPDVLDPGLPETLQKLTPEAKASLQKASIE 360
            EVF  YG + S+KIMWPRTDEER R +NCGFV+F  R+DA  A K ++  D+  G  M +GWGK + K ++ V V  ++   + PPPP     GLP   Q L+ + +  L+++ ++
Sbjct:  203 EVFGKYGPLASVKIMWPRTDEERQRGKNCGFVAFMTRKDAERAMKFVSGTDL-MGFEMKLGWGKAVPKPMHPVYVPPQLLELTMPPPPS----GLPFNAQPLSKDKEWVLERSMVK 313
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BLAST of mRNA_H-paniculata_contig929.17073.1 vs. uniprot
Match: G5AB50_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AB50_PHYSP)

HSP 1 Score: 87.4 bits (215), Expect = 1.420e-17
Identity = 46/100 (46.00%), Postives = 62/100 (62.00%), Query Frame = 1 
Query:   13 TQEV----FSPYGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKKGMANADVEAGHRMTIGWGKPINKLVNAVGVETKIDSEPPPPDVLDPGLP 300
            T+EV    F  YG VYS+KIMWPR++EERAR+RNCGFVSF+ R DA +A+  + N ++E G  + +GWGK +     A      + S   PP V  P +P
Sbjct:  222 TEEVLEKEFGRYGDVYSVKIMWPRSEEERARRRNCGFVSFYERRDADDARVNLDNKELE-GQPIIVGWGKAVKIQPRARAPGVLLPSPVTPPSVTTPTIP 320
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BLAST of mRNA_H-paniculata_contig929.17073.1 vs. uniprot
Match: A0A225VBK9_9STRA (U2-associated splicing factor n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VBK9_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 4.930e-17
Identity = 39/67 (58.21%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:   16 QEVFSPYGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKKGMANADVEAGHRMTIGWGKPI 216
            Q  F  YG+VYS+KIMWPR++EERARKRNCGFVSF++R DA +A+  + N ++E G  M +GWGK +
Sbjct:  221 QTEFGRYGEVYSVKIMWPRSEEERARKRNCGFVSFYQRRDADDARINLDNKELE-GQPMIVGWGKAV 286
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig929.17073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCR2_9PHAE1.130e-5383.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSA5_ECTSI7.200e-5382.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CAC0_9STRA1.110e-2764.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2DH44_9STRA5.950e-2362.50Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2WJA8_9STRA2.700e-2247.32Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2WJ81_9STRA2.760e-2247.32Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3UX26_HETAK8.410e-2261.97Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7R9BFQ8_9CRUS1.050e-1742.24Hypothetical protein n=1 Tax=Notodromas monacha Ta... [more]
G5AB50_PHYSP1.420e-1746.00Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A225VBK9_9STRA4.930e-1758.21U2-associated splicing factor n=1 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig929contigH-paniculata_contig929:29711..30381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score189.1
Seed ortholog evalue1.2e-45
Seed eggNOG ortholog2880.D7FSA5
Preferred nameU2SURP
KEGG koko:K02878,ko:K12842
KEGG Pathwayko03010,ko03040,map03010,map03040
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005685,GO:0005686,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0017069,GO:0030532,GO:0030619,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0035613,GO:0035614,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.U2 snRNP-associated SURP
EggNOG OGsKOG0151@1,KOG0151@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03041
Exons2
Model size375
Cds size375
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931156.149016-CDS-H-paniculata_contig929:29710..299071622931156.149016-CDS-H-paniculata_contig929:29710..29907Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig929 29711..29907 -
1691481615.768269-CDS-H-paniculata_contig929:29710..299071691481615.768269-CDS-H-paniculata_contig929:29710..29907Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig929 29711..29907 -
1622931156.172263-CDS-H-paniculata_contig929:30203..303811622931156.172263-CDS-H-paniculata_contig929:30203..30381Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig929 30204..30381 -
1691481615.7822914-CDS-H-paniculata_contig929:30203..303811691481615.7822914-CDS-H-paniculata_contig929:30203..30381Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig929 30204..30381 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig929.17073.1prot_H-paniculata_contig929.17073.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig929 29711..30381 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig929.17073.1

>prot_H-paniculata_contig929.17073.1 ID=prot_H-paniculata_contig929.17073.1|Name=mRNA_H-paniculata_contig929.17073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
MLHSTQEVFSPYGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAK
KGMANADVEAGHRMTIGWGKPINKLVNAVGVETKIDSEPPPPDVLDPGLP
ETLQKLTPEAKASLQKASIENCRA*
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mRNA from alignment at H-paniculata_contig929:29711..30381-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig929.17073.1 ID=mRNA_H-paniculata_contig929.17073.1|Name=mRNA_H-paniculata_contig929.17073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=671bp|location=Sequence derived from alignment at H-paniculata_contig929:29711..30381- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCCACTCCACGCAGGAAGTGTTCTCGCCTTACGGGAAGGTGTATTC
AATCAAGATCATGTGGCCCAGGACCGATGAGGAACGGGCGAGGAAGCGCA
ATTGTGGGTTTGTGAGTTTTTGGCGCAGGGAAGACGCCGTTAATGCCAAA
AAAGGGATGGCAAACGCGGATGTCGAAGGTGAATCCAAGCTTATTTTAAC
TTGCCCAAGTCATGGTGGGTTGGTCCACTGTAGGATCAATCGTGTATAGT
ATATGTAGTCATGTTCTTTGAAATCAGTCAACCTTAGATATGTACTAAGT
TTGTACATCAGGGGGGTTAGGCCGGCTGTTTAGACGCGTTCACTTTTGTC
CTTACCTGCACTTTACTCAACTGATTTAGTTCTTGTTCTCTGATGAGGAC
TGTTCTTGACTCTTGTTGAACGGATCCATGTTTTTTCTTGTGCCCAATCC
TCCCTCATTCTCTATTTGTGCGAGCAGGGCACAGAATGACGATTGGCTGG
GGCAAGCCCATTAACAAGCTTGTCAACGCGGTTGGAGTGGAGACGAAGAT
CGACAGCGAGCCGCCGCCGCCCGACGTGCTAGATCCGGGACTACCTGAGA
CCCTGCAGAAGCTCACTCCTGAGGCCAAAGCTAGCCTGCAGAAGGCAAGT
ATCGAGAATTGTCGTGCATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig929:29711..30381-

>mRNA_H-paniculata_contig929.17073.1 ID=mRNA_H-paniculata_contig929.17073.1|Name=mRNA_H-paniculata_contig929.17073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig929:29711..30381- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCCACTCCACGCAGGAAGTGTTCTCGCCTTACGGGAAGGTGTATTC
AATCAAGATCATGTGGCCCAGGACCGATGAGGAACGGGCGAGGAAGCGCA
ATTGTGGGTTTGTGAGTTTTTGGCGCAGGGAAGACGCCGTTAATGCCAAA
AAAGGGATGGCAAACGCGGATGTCGAAGATGCTCCACTCCACGCAGGAAG
TGTTCTCGCCTTACGGGAAGGTGTATTCAATCAAGATCATGTGGCCCAGG
ACCGATGAGGAACGGGCGAGGAAGCGCAATTGTGGGTTTGTGAGTTTTTG
GCGCAGGGAAGACGCCGTTAATGCCAAAAAAGGGATGGCAAACGCGGATG
TCGAAGCAGGGCACAGAATGACGATTGGCTGGGGCAAGCCCATTAACAAG
CTTGTCAACGCGGTTGGAGTGGAGACGAAGATCGACAGCGAGCCGCCGCC
GCCCGACGTGCTAGATCCGGGACTACCTGAGACCCTGCAGAAGCTCACTC
CTGAGGCCAAAGCTAGCCTGCAGAAGGCAAGTATCGAGAATTGTCGTGCA
TGACAGGGCACAGAATGACGATTGGCTGGGGCAAGCCCATTAACAAGCTT
GTCAACGCGGTTGGAGTGGAGACGAAGATCGACAGCGAGCCGCCGCCGCC
CGACGTGCTAGATCCGGGACTACCTGAGACCCTGCAGAAGCTCACTCCTG
AGGCCAAAGCTAGCCTGCAGAAGGCAAGTATCGAGAATTGTCGTGCATGA
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