mRNA_H-paniculata_contig12718.1707.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12718.1707.1
Unique NamemRNA_H-paniculata_contig12718.1707.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12718.1707.1 vs. uniprot
Match: D7FU12_ECTSI (GST N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU12_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 2.650e-32
Identity = 55/68 (80.88%), Postives = 65/68 (95.59%), Query Frame = 1
Query:   28 FSQVVREKLCELEIPHRFISAARGSPKRQRLYEMAGAGQTPYIIDPNTGVRGYESSEIVDYLDRTYAI 231
            F++VVREKL ELEIPH+F+S+ARGSPKRQ+LYEMAGAGQTPY+IDPNTG +GYESSEI DYLD+TYA+
Sbjct:  255 FTKVVREKLSELEIPHKFVSSARGSPKRQKLYEMAGAGQTPYLIDPNTGAKGYESSEINDYLDKTYAL 322          
BLAST of mRNA_H-paniculata_contig12718.1707.1 vs. uniprot
Match: A0A2I0IZB2_PUNGR (GST N-terminal domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0IZB2_PUNGR)

HSP 1 Score: 90.5 bits (223), Expect = 4.800e-22
Identity = 42/68 (61.76%), Postives = 52/68 (76.47%), Query Frame = 1
Query:   28 FSQVVREKLCELEIPHRFISAARGSPKRQRLYEMAGAGQTPYIIDPNTGVRGYESSEIVDYLDRTYAI 231
            F ++VRE L ELE+PH     ARGSPKRQ LYE AG  Q PY++DPNTGV+ +ES+EIV+YL  TYA+
Sbjct:   29 FCKLVREVLVELELPHLVRCCARGSPKRQMLYEKAGCFQVPYLVDPNTGVQMFESAEIVEYLQATYAL 96          
BLAST of mRNA_H-paniculata_contig12718.1707.1 vs. uniprot
Match: A0A8K0I1A4_COCNU (Putative thioredoxin family protein-like n=1 Tax=Cocos nucifera TaxID=13894 RepID=A0A8K0I1A4_COCNU)

HSP 1 Score: 90.1 bits (222), Expect = 3.140e-21
Identity = 42/68 (61.76%), Postives = 52/68 (76.47%), Query Frame = 1
Query:   28 FSQVVREKLCELEIPHRFISAARGSPKRQRLYEMAGAGQTPYIIDPNTGVRGYESSEIVDYLDRTYAI 231
            F ++VRE L ELE+PH   S ARGSPKRQ+LYE  G  Q PY+ DPNTGV+ +ES+EI+DYL  TYA+
Sbjct:   86 FCKIVREVLVELELPHILHSTARGSPKRQKLYEEVGHFQVPYLDDPNTGVKMFESAEIIDYLRATYAL 153          
BLAST of mRNA_H-paniculata_contig12718.1707.1 vs. uniprot
Match: A0A7J7NXP1_9MAGN (GST N-terminal domain-containing protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7NXP1_9MAGN)

HSP 1 Score: 90.1 bits (222), Expect = 3.470e-21
Identity = 42/68 (61.76%), Postives = 52/68 (76.47%), Query Frame = 1
Query:   28 FSQVVREKLCELEIPHRFISAARGSPKRQRLYEMAGAGQTPYIIDPNTGVRGYESSEIVDYLDRTYAI 231
            F ++VRE L ELE+PH   S ARGSPKRQ LY+ AG+ Q PY+ DPNTGV+ +ES+EIVDYL  TY +
Sbjct:   89 FCKIVRELLVELELPHTLRSCARGSPKRQVLYQKAGSFQVPYLEDPNTGVKMFESAEIVDYLKATYVL 156          
BLAST of mRNA_H-paniculata_contig12718.1707.1 vs. uniprot
Match: A0A7K1IME5_9ACTN (Glutathione S-transferase n=1 Tax=Nitriliruptoraceae bacterium ZYF776 TaxID=2604685 RepID=A0A7K1IME5_9ACTN)

HSP 1 Score: 87.4 bits (215), Expect = 7.090e-21
Identity = 42/68 (61.76%), Postives = 51/68 (75.00%), Query Frame = 1
Query:   28 FSQVVREKLCELEIPHRFISAARGSPKRQRLYEMAGAGQTPYIIDPNTGVRGYESSEIVDYLDRTYAI 231
            FS++VRE L ELE+PH   S ARGSPKRQ LY   G  Q PY+ DPNTGV+ +ES+EIV+YL  TYA+
Sbjct:   25 FSKLVREVLVELELPHILHSCARGSPKRQELYARVGHFQAPYLEDPNTGVKMFESAEIVEYLRATYAL 92          
BLAST of mRNA_H-paniculata_contig12718.1707.1 vs. uniprot
Match: A0A2P6VSK1_9CHLO (Uncharacterized protein n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VSK1_9CHLO)

HSP 1 Score: 94.0 bits (232), Expect = 1.170e-20
Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 1
Query:   28 FSQVVREKLCELEIPHRFISAARGSPKRQRLYEMAGAGQTPYIIDPNTGVRGYESSEIVDYLDRTY 225
            F +VVREK+CELE+PH + S ARGSPKRQ L+E  G  Q PYI DPNTGV  +ESS IV+YL++TY
Sbjct:  259 FCKVVREKMCELEVPHLYRSCARGSPKRQSLFERRGTFQVPYIEDPNTGVAMFESSAIVEYLEKTY 324          
BLAST of mRNA_H-paniculata_contig12718.1707.1 vs. uniprot
Match: A0A7S0N373_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N373_9CHLO)

HSP 1 Score: 92.4 bits (228), Expect = 1.280e-20
Identity = 41/68 (60.29%), Postives = 53/68 (77.94%), Query Frame = 1
Query:   28 FSQVVREKLCELEIPHRFISAARGSPKRQRLYEMAGAGQTPYIIDPNTGVRGYESSEIVDYLDRTYAI 231
            F +VVRE L ELEIPH+ IS ARGSPKRQ ++E  G  Q P+++DPNTGV  +ES+EIV+YL+ TY +
Sbjct:  270 FCKVVREVLVELEIPHKMISCARGSPKRQEMFEKKGLFQVPFLVDPNTGVETFESAEIVEYLESTYGL 337          
BLAST of mRNA_H-paniculata_contig12718.1707.1 vs. uniprot
Match: UPI00051AF6E3 (uncharacterized protein LOC104114425 n=1 Tax=Nicotiana tomentosiformis TaxID=4098 RepID=UPI00051AF6E3)

HSP 1 Score: 88.6 bits (218), Expect = 1.500e-20
Identity = 43/68 (63.24%), Postives = 51/68 (75.00%), Query Frame = 1
Query:   28 FSQVVREKLCELEIPHRFISAARGSPKRQRLYEMAGAGQTPYIIDPNTGVRGYESSEIVDYLDRTYAI 231
            F +VVRE L ELE+PH   S ARGSPKRQ LYE  G  Q PY+ DPNTGV+ +ES++IVDYL  TYA+
Sbjct:   93 FCKVVREVLVELELPHILHSCARGSPKRQVLYERVGHFQVPYLEDPNTGVQMFESADIVDYLQATYAL 160          
BLAST of mRNA_H-paniculata_contig12718.1707.1 vs. uniprot
Match: A0A6I9QCY0_ELAGV (uncharacterized protein LOC105033756 isoform X1 n=3 Tax=Arecaceae TaxID=4710 RepID=A0A6I9QCY0_ELAGV)

HSP 1 Score: 92.0 bits (227), Expect = 1.820e-20
Identity = 43/68 (63.24%), Postives = 53/68 (77.94%), Query Frame = 1
Query:   28 FSQVVREKLCELEIPHRFISAARGSPKRQRLYEMAGAGQTPYIIDPNTGVRGYESSEIVDYLDRTYAI 231
            F ++VRE L ELE+PH   S ARGSPKRQ+LYE AG  Q PY+ DPNTGV+ +ES+EI+DYL  TYA+
Sbjct:  274 FCKIVREVLVELELPHLLHSTARGSPKRQKLYEEAGHFQVPYLDDPNTGVKMFESAEIIDYLRATYAL 341          
BLAST of mRNA_H-paniculata_contig12718.1707.1 vs. uniprot
Match: A0A2G9HPP9_9LAMI (GST N-terminal domain-containing protein n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9HPP9_9LAMI)

HSP 1 Score: 87.8 bits (216), Expect = 2.530e-20
Identity = 43/68 (63.24%), Postives = 51/68 (75.00%), Query Frame = 1
Query:   28 FSQVVREKLCELEIPHRFISAARGSPKRQRLYEMAGAGQTPYIIDPNTGVRGYESSEIVDYLDRTYAI 231
            F +VVRE L ELE+PH   S ARGSPKRQ LY+  G  Q PY+ DPNTGV+ +ES+EIVDYL  TYA+
Sbjct:   86 FCKVVREVLVELELPHILHSCARGSPKRQVLYQRVGHFQVPYLEDPNTGVQMFESAEIVDYLRATYAL 153          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12718.1707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU12_ECTSI2.650e-3280.88GST N-terminal domain-containing protein n=2 Tax=E... [more]
A0A2I0IZB2_PUNGR4.800e-2261.76GST N-terminal domain-containing protein n=1 Tax=P... [more]
A0A8K0I1A4_COCNU3.140e-2161.76Putative thioredoxin family protein-like n=1 Tax=C... [more]
A0A7J7NXP1_9MAGN3.470e-2161.76GST N-terminal domain-containing protein n=1 Tax=K... [more]
A0A7K1IME5_9ACTN7.090e-2161.76Glutathione S-transferase n=1 Tax=Nitriliruptorace... [more]
A0A2P6VSK1_9CHLO1.170e-2065.15Uncharacterized protein n=1 Tax=Micractinium condu... [more]
A0A7S0N373_9CHLO1.280e-2060.29Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
UPI00051AF6E31.500e-2063.24uncharacterized protein LOC104114425 n=1 Tax=Nicot... [more]
A0A6I9QCY0_ELAGV1.820e-2063.24uncharacterized protein LOC105033756 isoform X1 n=... [more]
A0A2G9HPP9_9LAMI2.530e-2063.24GST N-terminal domain-containing protein n=1 Tax=H... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12718contigH-paniculata_contig12718:6198..6772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.2
Seed ortholog evalue5.2e-26
Seed eggNOG ortholog2880.D7FU12
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glutathione S-transferase, N-terminal domain
EggNOG OGs28NCX@1,2QUYC@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size234
Cds size234
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928993.7637427-CDS-H-paniculata_contig12718:6197..63231622928993.7637427-CDS-H-paniculata_contig12718:6197..6323Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12718 6198..6323 -
1691480694.5023842-CDS-H-paniculata_contig12718:6197..63231691480694.5023842-CDS-H-paniculata_contig12718:6197..6323Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12718 6198..6323 -
1622928993.7792325-CDS-H-paniculata_contig12718:6664..67721622928993.7792325-CDS-H-paniculata_contig12718:6664..6772Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12718 6665..6772 -
1691480694.5213645-CDS-H-paniculata_contig12718:6664..67721691480694.5213645-CDS-H-paniculata_contig12718:6664..6772Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12718 6665..6772 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12718.1707.1prot_H-paniculata_contig12718.1707.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12718 6198..6772 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12718.1707.1

>prot_H-paniculata_contig12718.1707.1 ID=prot_H-paniculata_contig12718.1707.1|Name=mRNA_H-paniculata_contig12718.1707.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
MLVIARTCVFSQVVREKLCELEIPHRFISAARGSPKRQRLYEMAGAGQTP
YIIDPNTGVRGYESSEIVDYLDRTYAI*
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mRNA from alignment at H-paniculata_contig12718:6198..6772-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12718.1707.1 ID=mRNA_H-paniculata_contig12718.1707.1|Name=mRNA_H-paniculata_contig12718.1707.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=575bp|location=Sequence derived from alignment at H-paniculata_contig12718:6198..6772- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGGTGATTGCTCGCACGTGTGTTTTTTCGCAGGTGGTCCGTGAGAA ACTTTGCGAGTTGGAGATTCCCCACAGGTTTATATCCGCGGCCAGGGGTA GTCCAAAGGTGTGTCGATGTCTAGGTGCTGGTCGCCCACCGGGAGTTGTC AAGTGCATTATGTTCCGGACAATGCAGTCGACTTTTTGAATGTCAGCTGT TGCTAACGCAAACATTCTCGAAGTCATTCCGACGTCGCCGTGTCATTGTT GGTCATCCGCAGATGGTGATGGTACGCGATGTGTTACATGTGTCGCTCGA TTTTACCCCCGCATGGCTGGGGCGGATTCGCCCTAGGGAAACGCTCGAAT CCTCAACTTCTTGCCCATTGGTCTCTATGAGCACCGACAGAGTTGTATCG AACAATGATAGCGCTTTTCTTGGTCTGTTATCGTGTTTGATCCCTGCAGC GCCAACGACTTTACGAGATGGCGGGGGCGGGCCAAACTCCCTACATCATC GACCCCAATACTGGTGTCAGGGGATACGAGAGCTCCGAGATAGTCGACTA CCTCGACAGGACTTACGCCATCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig12718:6198..6772-

>mRNA_H-paniculata_contig12718.1707.1 ID=mRNA_H-paniculata_contig12718.1707.1|Name=mRNA_H-paniculata_contig12718.1707.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig12718:6198..6772- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGGTGATTGCTCGCACGTGTGTTTTTTCGCAGGTGGTCCGTGAGAA
ACTTTGCGAGTTGGAGATTCCCCACAGGTTTATATCCGCGGCCAGGGGTA
GTCCAAAGATGCTGGTGATTGCTCGCACGTGTGTTTTTTCGCAGGTGGTC
CGTGAGAAACTTTGCGAGTTGGAGATTCCCCACAGGTTTATATCCGCGGC
CAGGGGTAGTCCAAAGCGCCAACGACTTTACGAGATGGCGGGGGCGGGCC
AAACTCCCTACATCATCGACCCCAATACTGGTGTCAGGGGATACGAGAGC
TCCGAGATAGTCGACTACCTCGACAGGACTTACGCCATCTGACGCCAACG
ACTTTACGAGATGGCGGGGGCGGGCCAAACTCCCTACATCATCGACCCCA
ATACTGGTGTCAGGGGATACGAGAGCTCCGAGATAGTCGACTACCTCGAC
AGGACTTACGCCATCTGA
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