prot_H-paniculata_contig9165.16979.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig9165.16979.1
Unique Nameprot_H-paniculata_contig9165.16979.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length84
Homology
BLAST of mRNA_H-paniculata_contig9165.16979.1 vs. uniprot
Match: A0A8F0F766_9PHAE (Ribosomal protein L24 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F766_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 2.090e-38
Identity = 68/83 (81.93%), Postives = 72/83 (86.75%), Query Frame = 0
Query:    1 MRKKVTLKKILTIKVGEKVKIISGNDKGKEGLVKKTFKSTNQIIVEGINIKVKHSKSQRSGETGEIKRIEFPIHRSNILRYKE 83
            M+KKVT KK + IKVGEKVKIISGNDKGKEGL+ K  KSTNQIIVEG+NIKVKH K QR GETGEIKR EFPIH SNILRYKE
Sbjct:    1 MKKKVTFKKRINIKVGEKVKIISGNDKGKEGLITKICKSTNQIIVEGVNIKVKHHKPQRPGETGEIKRAEFPIHCSNILRYKE 83          
BLAST of mRNA_H-paniculata_contig9165.16979.1 vs. uniprot
Match: A0A8F0FAR6_9PHAE (Ribosomal protein L24 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAR6_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 5.940e-29
Identity = 53/83 (63.86%), Postives = 66/83 (79.52%), Query Frame = 0
Query:    1 MRKKVTLKKILTIKVGEKVKIISGNDKGKEGLVKKTFKSTNQIIVEGINIKVKHSKSQRSGETGEIKRIEFPIHRSNILRYKE 83
            M+KK  L + + +++GEKVK+ISG DKGK GLV K  K  N++IVEGINIKVKH K+ RSG+TGEIKRIEFPIH SN+  Y+E
Sbjct:    1 MKKKTPLIRKIHVRIGEKVKVISGQDKGKVGLVTKIVKQQNKLIVEGINIKVKHIKANRSGQTGEIKRIEFPIHSSNVSHYEE 83          
BLAST of mRNA_H-paniculata_contig9165.16979.1 vs. uniprot
Match: D1J741_ECTSI (50S ribosomal protein L24, chloroplastic n=5 Tax=Ectocarpales TaxID=2877 RepID=D1J741_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 1.200e-28
Identity = 56/83 (67.47%), Postives = 64/83 (77.11%), Query Frame = 0
Query:    1 MRKKVTLKKILTIKVGEKVKIISGNDKGKEGLVKKTFKSTNQIIVEGINIKVKHSKSQRSGETGEIKRIEFPIHRSNILRYKE 83
            M+KKVTLK    +K+GEKVKIISG DKGK GLVKK  K  N++IVEGINI VKH K  R G+ GEIKRIEFPIH SN+  Y+E
Sbjct:    1 MKKKVTLKLKGHVKIGEKVKIISGKDKGKTGLVKKILKQKNRLIVEGINIGVKHIKPTRPGQNGEIKRIEFPIHSSNVSLYQE 83          
BLAST of mRNA_H-paniculata_contig9165.16979.1 vs. uniprot
Match: A0A0S0FBF3_COSCS (50S ribosomal protein L24 n=24 Tax=Laminariales TaxID=2886 RepID=A0A0S0FBF3_COSCS)

HSP 1 Score: 104 bits (260), Expect = 9.840e-28
Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = 0
Query:    1 MRKKVTLKKILTIKVGEKVKIISGNDKGKEGLVKKTFKSTNQIIVEGINIKVKHSKSQRSGETGEIKRIEFPIHRSNILRYKE 83
            M+KK TLK  + +K+GEKVKIISG +KGK GLVKK  K  N++I+EGINI++KH K  R  E GEIKRIEFPIH SN+  Y+E
Sbjct:    1 MKKKATLKMKVHVKIGEKVKIISGQEKGKVGLVKKIIKQENKLIIEGINIRIKHVKPTRPEENGEIKRIEFPIHSSNVSLYQE 83          
BLAST of mRNA_H-paniculata_contig9165.16979.1 vs. uniprot
Match: A0A2R4QQ49_9PHAE (50S ribosomal protein L24 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ49_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.990e-27
Identity = 52/83 (62.65%), Postives = 63/83 (75.90%), Query Frame = 0
Query:    1 MRKKVTLKKILTIKVGEKVKIISGNDKGKEGLVKKTFKSTNQIIVEGINIKVKHSKSQRSGETGEIKRIEFPIHRSNILRYKE 83
            M+KK  +KK L +K+GEKVKIISG  KGK GLVKK  K  N++I+EGINIK+KH K+ R GE GEIKR+EFPI  SN+  Y E
Sbjct:    1 MKKKTKIKKKLHVKIGEKVKIISGYQKGKVGLVKKIIKQKNKLIIEGINIKIKHIKASRPGEDGEIKRMEFPIDSSNVSSYNE 83          
BLAST of mRNA_H-paniculata_contig9165.16979.1 vs. uniprot
Match: A0A2I4Q2I2_9PHAE (50S ribosomal protein L24, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2I2_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 4.940e-26
Identity = 47/71 (66.20%), Postives = 60/71 (84.51%), Query Frame = 0
Query:   13 IKVGEKVKIISGNDKGKEGLVKKTFKSTNQIIVEGINIKVKHSKSQRSGETGEIKRIEFPIHRSNILRYKE 83
            IK+GEKVK+ISG +KGK GL+KK  ++ +++IVEGINI+ KHSKS R G+ GEIKRIEFPIH SN+ +YKE
Sbjct:   15 IKLGEKVKVISGQEKGKIGLIKKIIRAKSKVIVEGINIRFKHSKSTRPGQVGEIKRIEFPIHSSNVSKYKE 85          
BLAST of mRNA_H-paniculata_contig9165.16979.1 vs. uniprot
Match: A0A8F0F9N2_9PHAE (Ribosomal protein L24 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9N2_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 9.960e-26
Identity = 51/83 (61.45%), Postives = 64/83 (77.11%), Query Frame = 0
Query:    1 MRKKVTLKKILTIKVGEKVKIISGNDKGKEGLVKKTFKSTNQIIVEGINIKVKHSKSQRSGETGEIKRIEFPIHRSNILRYKE 83
            M+KK+ L+  + IK+GEKVKIISG +KGK GLVK+  K  N++IVEG+NIKVKH K  R  + GEIKRIEFPIH SN+  Y+E
Sbjct:    1 MKKKMKLQIKVNIKLGEKVKIISGREKGKVGLVKEIIKKKNKLIVEGVNIKVKHLKPTRPEQNGEIKRIEFPIHSSNVSLYQE 83          
BLAST of mRNA_H-paniculata_contig9165.16979.1 vs. uniprot
Match: A0A141BSN0_9PHAE (50S ribosomal protein L24, chloroplastic n=12 Tax=Sargassum TaxID=3015 RepID=A0A141BSN0_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.300e-25
Identity = 50/81 (61.73%), Postives = 62/81 (76.54%), Query Frame = 0
Query:    3 KKVTLKKILTIKVGEKVKIISGNDKGKEGLVKKTFKSTNQIIVEGINIKVKHSKSQRSGETGEIKRIEFPIHRSNILRYKE 83
            KK  LK+ + IK+GE VK+ISG +KGK GLVKK  +S N++I++GINI+ KH KS R GE GEIKRIEFPI  SN+  YKE
Sbjct:    2 KKTKLKRKVHIKIGETVKVISGQEKGKIGLVKKIVRSKNKLIIQGINIRTKHIKSNRPGEDGEIKRIEFPIDSSNVSSYKE 82          
BLAST of mRNA_H-paniculata_contig9165.16979.1 vs. uniprot
Match: A0A8F0F7Z5_9PHAE (Ribosomal protein L24 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7Z5_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 2.700e-25
Identity = 49/83 (59.04%), Postives = 63/83 (75.90%), Query Frame = 0
Query:    1 MRKKVTLKKILTIKVGEKVKIISGNDKGKEGLVKKTFKSTNQIIVEGINIKVKHSKSQRSGETGEIKRIEFPIHRSNILRYKE 83
            M+KKV+L   + +K+GEKV +ISG +KGK GLVKK  K  N++I+EGINI+VKH K  R  + GEIKRIEFPIH SN+  Y+E
Sbjct:    1 MKKKVSLPIKVHVKIGEKVTVISGKEKGKVGLVKKILKQQNKLIIEGINIRVKHVKPSRPEQNGEIKRIEFPIHSSNVSLYQE 83          
BLAST of mRNA_H-paniculata_contig9165.16979.1 vs. uniprot
Match: A0A8B0R7D8_SCYLO (50S ribosomal protein L24, chloroplastic n=3 Tax=Ectocarpales TaxID=2877 RepID=A0A8B0R7D8_SCYLO)

HSP 1 Score: 97.4 bits (241), Expect = 7.730e-25
Identity = 50/83 (60.24%), Postives = 61/83 (73.49%), Query Frame = 0
Query:    1 MRKKVTLKKILTIKVGEKVKIISGNDKGKEGLVKKTFKSTNQIIVEGINIKVKHSKSQRSGETGEIKRIEFPIHRSNILRYKE 83
            M+KK  L+    +K+GEKV IISG +KGK GLVKK  K  N++I+EGINI VKH K  R G+ GEIKRIEFPIH SN+  Y+E
Sbjct:    1 MKKKAALQLKAHVKIGEKVIIISGREKGKIGLVKKILKQKNRLIIEGINIGVKHIKPTRPGQNGEIKRIEFPIHSSNVSLYQE 83          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9165.16979.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0F766_9PHAE2.090e-3881.93Ribosomal protein L24 n=1 Tax=Protohalopteris sp. ... [more]
A0A8F0FAR6_9PHAE5.940e-2963.86Ribosomal protein L24 n=1 Tax=Desmarestia aculeata... [more]
D1J741_ECTSI1.200e-2867.4750S ribosomal protein L24, chloroplastic n=5 Tax=E... [more]
A0A0S0FBF3_COSCS9.840e-2862.6550S ribosomal protein L24 n=24 Tax=Laminariales Ta... [more]
A0A2R4QQ49_9PHAE1.990e-2762.6550S ribosomal protein L24 n=3 Tax=Fucaceae TaxID=3... [more]
A0A2I4Q2I2_9PHAE4.940e-2666.2050S ribosomal protein L24, chloroplastic n=1 Tax=D... [more]
A0A8F0F9N2_9PHAE9.960e-2661.45Ribosomal protein L24 n=1 Tax=Chorda asiatica TaxI... [more]
A0A141BSN0_9PHAE1.300e-2561.7350S ribosomal protein L24, chloroplastic n=12 Tax=... [more]
A0A8F0F7Z5_9PHAE2.700e-2559.04Ribosomal protein L24 n=2 Tax=Laminariales TaxID=2... [more]
A0A8B0R7D8_SCYLO7.730e-2560.2450S ribosomal protein L24, chloroplastic n=3 Tax=E... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005824KOWSMARTSM00739kow_9coord: 12..39
e-value: 3.2E-4
score: 30.0
IPR005824KOWPFAMPF00467KOWcoord: 15..46
e-value: 3.8E-6
score: 26.6
IPR014722Ribosomal protein L2, domain 2GENE3D2.30.30.30coord: 3..83
e-value: 9.2E-20
score: 72.8
IPR003256Ribosomal protein L24TIGRFAMTIGR01079TIGR01079coord: 12..81
e-value: 1.4E-18
score: 65.2
IPR003256Ribosomal protein L24PANTHERPTHR12903MITOCHONDRIAL RIBOSOMAL PROTEIN L24coord: 4..78
IPR003256Ribosomal protein L24HAMAPMF_01326_BRibosomal_L24_Bcoord: 11..82
score: 13.662
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 8..81

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9165contigH-paniculata_contig9165:1469..1720 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9165.16979.1mRNA_H-paniculata_contig9165.16979.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig9165 1469..1720 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig9165.16979.1 ID=prot_H-paniculata_contig9165.16979.1|Name=mRNA_H-paniculata_contig9165.16979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
MRKKVTLKKILTIKVGEKVKIISGNDKGKEGLVKKTFKSTNQIIVEGINI
KVKHSKSQRSGETGEIKRIEFPIHRSNILRYKE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005824KOW
IPR014722Rib_L2_dom2
IPR003256Ribosomal_L24
IPR008991Translation_prot_SH3-like_sf